Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

Top 2.2% on bioconductor.org
Top 4.3% downloads on bioconductor.org
Top 2.9% dependent packages on bioconductor.org
Top 2.1% forks on bioconductor.org

bioconductor.org : ggbio

Visualization tools for genomic data

Registry - Source - Documentation - JSON
purl: pkg:bioconductor/ggbio
Keywords: Infrastructure, Software, Visualization
License: Artistic-2.0
Latest release: 7 months ago
First release: 8 months ago
Dependent packages: 27
Downloads: 443,282 total
Stars: 110 on GitHub
Forks: 24 on GitHub
See more repository details: repos.ecosyste.ms
Last synced: 8 days ago

Top 4.7% on bioconductor.org
RnBeads 2.22.0
RnBeads
3 versions - Latest release: 25 days ago - 1 dependent package - 54.4 thousand downloads total - 1 maintainer
Top 3.2% on bioconductor.org
beadarray 2.54.0
Quality assessment and low-level analysis for Illumina BeadArray data
3 versions - Latest release: 26 days ago - 5 dependent packages - 196 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
gwascat 2.36.0
representing and modeling data in the EMBL-EBI GWAS catalog
3 versions - Latest release: 26 days ago - 7 dependent packages - 64.9 thousand downloads total - 1 maintainer
OUTRIDER 1.22.0
OUTRIDER - OUTlier in RNA-Seq fInDER
3 versions - Latest release: 26 days ago - 1 dependent package - 15.7 thousand downloads total - 45 stars on GitHub - 1 maintainer
Top 2.3% on bioconductor.org
ReportingTools 2.44.0
Tools for making reports in various formats
4 versions - Latest release: 26 days ago - 5 dependent packages - 201 thousand downloads total - 3 maintainers
cageminer 1.10.0
Candidate Gene Miner
3 versions - Latest release: 26 days ago - 2.64 thousand downloads total - 1 stars on GitHub - 1 maintainer
derfinderPlot 1.38.0
Plotting functions for derfinder
3 versions - Latest release: about 1 month ago - 3 dependent packages - 21.4 thousand downloads total - 2 stars on GitHub - 1 maintainer
FRASER 2.0.0
Find RAre Splicing Events in RNA-Seq Data
4 versions - Latest release: about 1 month ago - 8.26 thousand downloads total - 32 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
ensembldb 2.28.0
Utilities to create and use Ensembl-based annotation databases
3 versions - Latest release: about 1 month ago - 40 dependent packages - 1.06 million downloads total - 33 stars on GitHub - 1 maintainer
shiny.gosling 1.0.0
A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny
2 versions - Latest release: about 1 month ago - 1 dependent package - 426 downloads total - 1 maintainer
NanoStringNCTools 1.10.1
NanoString nCounter Tools
4 versions - Latest release: about 1 month ago - 2 dependent packages - 14.3 thousand downloads total - 1 maintainer
bambu 3.4.1
Context-Aware Transcript Quantification from Long Read RNA-Seq data
4 versions - Latest release: about 1 month ago - 1 dependent package - 13 thousand downloads total - 118 stars on GitHub - 1 maintainer
R3CPET 1.34.1
3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
4 versions - Latest release: 5 months ago - 12.8 thousand downloads total - 3 stars on GitHub - 1 maintainer
scruff 1.20.0
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
3 versions - Latest release: 6 months ago - 7.81 thousand downloads total - 8 stars on GitHub - 1 maintainer
Top 8.7% on bioconductor.org
regionReport 1.36.0
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results
3 versions - Latest release: 6 months ago - 1 dependent package - 24.6 thousand downloads total - 9 stars on GitHub - 1 maintainer
SomaticSignatures 2.38.0
Somatic Signatures
3 versions - Latest release: 6 months ago - 1 dependent package - 43.5 thousand downloads total - 21 stars on GitHub - 1 maintainer
BOBaFIT 1.6.0
Refitting diploid region profiles using a clustering procedure
3 versions - Latest release: 7 months ago - 2.28 thousand downloads total - 0 stars on GitHub - 1 maintainer
CAFE 1.38.0
Chromosmal Aberrations Finder in Expression data
3 versions - Latest release: 7 months ago - 17.6 thousand downloads total - 1 maintainer
FLAMES 1.8.0
FLAMES: Full Length Analysis of Mutations and Splicing in long read RNA-seq data
3 versions - Latest release: 7 months ago - 4.98 thousand downloads total - 7 stars on GitHub - 1 maintainer
Pi 2.14.0
Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene and Pathway Level
3 versions - Latest release: 7 months ago - 17.9 thousand downloads total - 1 maintainer
GenomicOZone 1.16.0
Delineate outstanding genomic zones of differential gene activity
3 versions - Latest release: 7 months ago - 5.21 thousand downloads total - 1 maintainer
msgbsR 1.26.0
msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions
3 versions - Latest release: 7 months ago - 9.48 thousand downloads total - 1 maintainer
intansv 1.42.0
Integrative analysis of structural variations
3 versions - Latest release: 7 months ago - 21.1 thousand downloads total - 1 maintainer
RiboProfiling 1.32.0
Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation
3 versions - Latest release: 7 months ago - 16.4 thousand downloads total - 1 maintainer
StructuralVariantAnnotation 1.18.0
Variant annotations for structural variants
3 versions - Latest release: 7 months ago - 3 dependent packages - 15.3 thousand downloads total - 1 maintainer
universalmotif 1.20.0
Import, Modify, and Export Motifs with R
3 versions - Latest release: 7 months ago - 4 dependent packages - 28.5 thousand downloads total - 1 maintainer
Top 6.5% on bioconductor.org
interactiveDisplay 1.40.0
Package for enabling powerful shiny web displays of Bioconductor objects
3 versions - Latest release: 7 months ago - 1 dependent package - 39.9 thousand downloads total - 1 maintainer