Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org packages
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Top 3.8% on bioconductor.org
3 versions - Latest release: 9 days ago - 1,223 dependent packages - 736 thousand downloads total - 12 stars on GitHub - 1 maintainer
BiocStyle 2.32.0
Standard styles for vignettes and other Bioconductor documents3 versions - Latest release: 9 days ago - 1,223 dependent packages - 736 thousand downloads total - 12 stars on GitHub - 1 maintainer
Top 0.1% on bioconductor.org
5 versions - Latest release: 8 days ago - 706 dependent packages - 7.4 million downloads total - 1 maintainer
S4Vectors 0.42.0
Foundation of vector-like and list-like containers in Bioconductor5 versions - Latest release: 8 days ago - 706 dependent packages - 7.4 million downloads total - 1 maintainer
Top 0.1% on bioconductor.org
3 versions - Latest release: 8 days ago - 701 dependent packages - 8.14 million downloads total - 1 maintainer
BiocGenerics 0.50.0
S4 generic functions used in Bioconductor3 versions - Latest release: 8 days ago - 701 dependent packages - 8.14 million downloads total - 1 maintainer
Top 0.2% on bioconductor.org
3 versions - Latest release: 8 days ago - 590 dependent packages - 4.93 million downloads total - 1 maintainer
SummarizedExperiment 1.34.0
SummarizedExperiment container3 versions - Latest release: 8 days ago - 590 dependent packages - 4.93 million downloads total - 1 maintainer
Top 0.1% on bioconductor.org
4 versions - Latest release: 8 days ago - 577 dependent packages - 6.3 million downloads total - 1 maintainer
GenomicRanges 1.56.0
Representation and manipulation of genomic intervals4 versions - Latest release: 8 days ago - 577 dependent packages - 6.3 million downloads total - 1 maintainer
Top 0.1% on bioconductor.org
3 versions - Latest release: 8 days ago - 545 dependent packages - 7.99 million downloads total - 1 maintainer
IRanges 2.38.0
Foundation of integer range manipulation in Bioconductor3 versions - Latest release: 8 days ago - 545 dependent packages - 7.99 million downloads total - 1 maintainer
Top 0.1% on bioconductor.org
3 versions - Latest release: 8 days ago - 509 dependent packages - 7.87 million downloads total - 1 maintainer
Biobase 2.64.0
Biobase: Base functions for Bioconductor3 versions - Latest release: 8 days ago - 509 dependent packages - 7.87 million downloads total - 1 maintainer
Top 1.1% on bioconductor.org
3 versions - Latest release: 9 days ago - 356 dependent packages - 5.51 million downloads total - 63 stars on GitHub - 1 maintainer
BiocParallel 1.38.0
Bioconductor facilities for parallel evaluation3 versions - Latest release: 9 days ago - 356 dependent packages - 5.51 million downloads total - 63 stars on GitHub - 1 maintainer
Top 0.2% on bioconductor.org
10 versions - Latest release: 8 days ago - 327 dependent packages - 7.14 million downloads total - 1 maintainer
GenomeInfoDb 1.40.0
Utilities for manipulating chromosome names, including modifying them to follow a particular nami...10 versions - Latest release: 8 days ago - 327 dependent packages - 7.14 million downloads total - 1 maintainer
Top 0.2% on bioconductor.org
6 versions - Latest release: 8 days ago - 324 dependent packages - 6.24 million downloads total - 1 maintainer
Biostrings 2.72.0
Efficient manipulation of biological strings6 versions - Latest release: 8 days ago - 324 dependent packages - 6.24 million downloads total - 1 maintainer
Top 0.3% on bioconductor.org
4 versions - Latest release: 8 days ago - 315 dependent packages - 5.07 million downloads total - 1 maintainer
limma 3.60.0
Linear Models for Microarray Data4 versions - Latest release: 8 days ago - 315 dependent packages - 5.07 million downloads total - 1 maintainer
Top 0.3% on bioconductor.org
3 versions - Latest release: 8 days ago - 247 dependent packages - 6 million downloads total - 1 maintainer
AnnotationDbi 1.66.0
Manipulation of SQLite-based annotations in Bioconductor3 versions - Latest release: 8 days ago - 247 dependent packages - 6 million downloads total - 1 maintainer
Top 0.4% on bioconductor.org
3 versions - Latest release: 8 days ago - 239 dependent packages - 3.84 million downloads total - 1 maintainer
rtracklayer 1.64.0
R interface to genome annotation files and the UCSC genome browser3 versions - Latest release: 8 days ago - 239 dependent packages - 3.84 million downloads total - 1 maintainer
Top 0.4% on bioconductor.org
3 versions - Latest release: 8 days ago - 208 dependent packages - 3.89 million downloads total - 1 maintainer
Rsamtools 2.20.0
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import3 versions - Latest release: 8 days ago - 208 dependent packages - 3.89 million downloads total - 1 maintainer
Top 1.0% on bioconductor.org
3 versions - Latest release: 8 days ago - 186 dependent packages - 1.06 million downloads total - 1 maintainer
SingleCellExperiment 1.26.0
S4 Classes for Single Cell Data3 versions - Latest release: 8 days ago - 186 dependent packages - 1.06 million downloads total - 1 maintainer
Top 0.5% on bioconductor.org
6 versions - Latest release: 8 days ago - 175 dependent packages - 3.3 million downloads total - 1 maintainer
GenomicFeatures 1.56.0
Conveniently import and query gene models6 versions - Latest release: 8 days ago - 175 dependent packages - 3.3 million downloads total - 1 maintainer
Top 0.6% on bioconductor.org
14 versions - Latest release: 8 days ago - 171 dependent packages - 3.01 million downloads total - 4 maintainers
edgeR 4.2.0
Empirical Analysis of Digital Gene Expression Data in R14 versions - Latest release: 8 days ago - 171 dependent packages - 3.01 million downloads total - 4 maintainers
Top 0.5% on bioconductor.org
4 versions - Latest release: 9 days ago - 135 dependent packages - 2.76 million downloads total - 327 stars on GitHub - 1 maintainer
DESeq2 1.44.0
Differential gene expression analysis based on the negative binomial distribution4 versions - Latest release: 9 days ago - 135 dependent packages - 2.76 million downloads total - 327 stars on GitHub - 1 maintainer
Top 0.6% on bioconductor.org
5 versions - Latest release: 8 days ago - 128 dependent packages - 3.54 million downloads total - 1 maintainer
GenomicAlignments 1.40.0
Representation and manipulation of short genomic alignments5 versions - Latest release: 8 days ago - 128 dependent packages - 3.54 million downloads total - 1 maintainer
Top 0.8% on bioconductor.org
5 versions - Latest release: 8 days ago - 125 dependent packages - 1.99 million downloads total - 1 maintainer
BSgenome 1.72.0
Software infrastructure for efficient representation of full genomes and their SNPs5 versions - Latest release: 8 days ago - 125 dependent packages - 1.99 million downloads total - 1 maintainer
Top 2.6% on bioconductor.org
5 versions - Latest release: 9 days ago - 118 dependent packages - 3.98 million downloads total - 30 stars on GitHub - 1 maintainer
biomaRt 2.60.0
Interface to BioMart databases (i.e. Ensembl)5 versions - Latest release: 9 days ago - 118 dependent packages - 3.98 million downloads total - 30 stars on GitHub - 1 maintainer
Top 0.5% on bioconductor.org
3 versions - Latest release: 8 days ago - 107 dependent packages - 4.95 million downloads total - 1 maintainer
DelayedArray 0.30.0
A unified framework for working transparently with on-disk and in-memory array-like datasets3 versions - Latest release: 8 days ago - 107 dependent packages - 4.95 million downloads total - 1 maintainer
Top 0.7% on bioconductor.org
3 versions - Latest release: 8 days ago - 100 dependent packages - 2.55 million downloads total - 1 maintainer
graph 1.82.0
graph: A package to handle graph data structures3 versions - Latest release: 8 days ago - 100 dependent packages - 2.55 million downloads total - 1 maintainer
Top 0.9% on bioconductor.org
4 versions - Latest release: 8 days ago - 89 dependent packages - 1.54 million downloads total - 1 maintainer
VariantAnnotation 1.50.0
Annotation of Genetic Variants4 versions - Latest release: 8 days ago - 89 dependent packages - 1.54 million downloads total - 1 maintainer
Top 4.8% on bioconductor.org
4 versions - Latest release: 15 days ago - 88 dependent packages - 1.85 million downloads total - 11 stars on GitHub - 1 maintainer
BiocFileCache 2.10.2
Manage Files Across Sessions4 versions - Latest release: 15 days ago - 88 dependent packages - 1.85 million downloads total - 11 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
2 versions - Latest release: 7 months ago - 87 dependent packages - 1.02 million downloads total - 21 stars on GitHub - 1 maintainer
ComplexHeatmap 2.18.0
Make Complex Heatmaps2 versions - Latest release: 7 months ago - 87 dependent packages - 1.02 million downloads total - 21 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
3 versions - Latest release: 15 days ago - 87 dependent packages - 966 thousand downloads total - 13 stars on GitHub - 1 maintainer
AnnotationHub 3.10.1
Client to access AnnotationHub resources3 versions - Latest release: 15 days ago - 87 dependent packages - 966 thousand downloads total - 13 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
4 versions - Latest release: 8 days ago - 86 dependent packages - 616 thousand downloads total - 1 maintainer
scater 1.32.0
Single-Cell Analysis Toolkit for Gene Expression Data in R4 versions - Latest release: 8 days ago - 86 dependent packages - 616 thousand downloads total - 1 maintainer
Top 0.9% on bioconductor.org
3 versions - Latest release: 8 days ago - 74 dependent packages - 1.85 million downloads total - 1 maintainer
affy 1.82.0
Methods for Affymetrix Oligonucleotide Arrays3 versions - Latest release: 8 days ago - 74 dependent packages - 1.85 million downloads total - 1 maintainer
Top 0.7% on bioconductor.org
3 versions - Latest release: 8 days ago - 65 dependent packages - 3.3 million downloads total - 1 maintainer
genefilter 1.86.0
genefilter: methods for filtering genes from high-throughput experiments3 versions - Latest release: 8 days ago - 65 dependent packages - 3.3 million downloads total - 1 maintainer
Top 1.7% on bioconductor.org
4 versions - Latest release: 8 days ago - 63 dependent packages - 2.08 million downloads total - 59 stars on GitHub - 1 maintainer
rhdf5 2.48.0
R Interface to HDF54 versions - Latest release: 8 days ago - 63 dependent packages - 2.08 million downloads total - 59 stars on GitHub - 1 maintainer
Top 1.0% on bioconductor.org
3 versions - Latest release: 8 days ago - 60 dependent packages - 1.51 million downloads total - 1 maintainer
Rgraphviz 2.48.0
Provides plotting capabilities for R graph objects3 versions - Latest release: 8 days ago - 60 dependent packages - 1.51 million downloads total - 1 maintainer
Top 2.5% on bioconductor.org
3 versions - Latest release: 1 day ago - 57 dependent packages - 245 thousand downloads total - 1 maintainer
MultiAssayExperiment 1.30.1
Software for the integration of multi-omics experiments in Bioconductor3 versions - Latest release: 1 day ago - 57 dependent packages - 245 thousand downloads total - 1 maintainer
Top 6.2% on bioconductor.org
2 versions - Latest release: 6 months ago - 56 dependent packages - 427 thousand downloads total - 6 stars on GitHub - 1 maintainer
ExperimentHub 2.10.0
Client to access ExperimentHub resources2 versions - Latest release: 6 months ago - 56 dependent packages - 427 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
4 versions - Latest release: 9 days ago - 55 dependent packages - 834 thousand downloads total - 66 stars on GitHub - 1 maintainer
Gviz 1.48.0
Plotting data and annotation information along genomic coordinates4 versions - Latest release: 9 days ago - 55 dependent packages - 834 thousand downloads total - 66 stars on GitHub - 1 maintainer
Top 2.1% on bioconductor.org
4 versions - Latest release: 4 months ago - 53 dependent packages - 391 thousand downloads total - 1 maintainer
scran 1.30.2
Methods for Single-Cell RNA-Seq Data Analysis4 versions - Latest release: 4 months ago - 53 dependent packages - 391 thousand downloads total - 1 maintainer
Top 1.4% on bioconductor.org
4 versions - Latest release: 8 days ago - 53 dependent packages - 978 thousand downloads total - 1 maintainer
HDF5Array 1.32.0
HDF5 backend for DelayedArray objects4 versions - Latest release: 8 days ago - 53 dependent packages - 978 thousand downloads total - 1 maintainer
Top 1.2% on bioconductor.org
4 versions - Latest release: 8 days ago - 53 dependent packages - 1.39 million downloads total - 1 maintainer
clusterProfiler 4.12.0
A universal enrichment tool for interpreting omics data4 versions - Latest release: 8 days ago - 53 dependent packages - 1.39 million downloads total - 1 maintainer
Top 3.9% on bioconductor.org
3 versions - Latest release: 2 days ago - 50 dependent packages - 2.16 million downloads total - 14 stars on GitHub - 1 maintainer
preprocessCore 1.66.0
A collection of pre-processing functions3 versions - Latest release: 2 days ago - 50 dependent packages - 2.16 million downloads total - 14 stars on GitHub - 1 maintainer
Top 1.4% on bioconductor.org
3 versions - Latest release: 8 days ago - 49 dependent packages - 973 thousand downloads total - 1 maintainer
GSEABase 1.66.0
Gene set enrichment data structures and methods3 versions - Latest release: 8 days ago - 49 dependent packages - 973 thousand downloads total - 1 maintainer
Top 0.8% on bioconductor.org
5 versions - Latest release: 8 days ago - 49 dependent packages - 4.77 million downloads total - 1 maintainer
flowCore 2.16.0
flowCore: Basic structures for flow cytometry data5 versions - Latest release: 8 days ago - 49 dependent packages - 4.77 million downloads total - 1 maintainer
Top 0.9% on bioconductor.org
3 versions - Latest release: 8 days ago - 48 dependent packages - 3.59 million downloads total - 1 maintainer
annotate 1.82.0
Annotation for microarrays3 versions - Latest release: 8 days ago - 48 dependent packages - 3.59 million downloads total - 1 maintainer
Top 1.4% on bioconductor.org
3 versions - Latest release: 8 days ago - 47 dependent packages - 1.86 million downloads total - 82 stars on GitHub - 1 maintainer
GEOquery 2.72.0
Get data from NCBI Gene Expression Omnibus (GEO)3 versions - Latest release: 8 days ago - 47 dependent packages - 1.86 million downloads total - 82 stars on GitHub - 1 maintainer
Top 1.3% on bioconductor.org
3 versions - Latest release: 8 days ago - 44 dependent packages - 1.47 million downloads total - 1 maintainer
impute 1.78.0
impute: Imputation for microarray data3 versions - Latest release: 8 days ago - 44 dependent packages - 1.47 million downloads total - 1 maintainer
Top 1.4% on bioconductor.org
3 versions - Latest release: 8 days ago - 44 dependent packages - 1.53 million downloads total - 106 stars on GitHub - 2 maintainers
qvalue 2.36.0
Q-value estimation for false discovery rate control3 versions - Latest release: 8 days ago - 44 dependent packages - 1.53 million downloads total - 106 stars on GitHub - 2 maintainers
Top 4.6% on bioconductor.org
3 versions - Latest release: 9 days ago - 43 dependent packages - 1.1 million downloads total - 15 stars on GitHub - 1 maintainer
DelayedMatrixStats 1.26.0
Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects3 versions - Latest release: 9 days ago - 43 dependent packages - 1.1 million downloads total - 15 stars on GitHub - 1 maintainer
Top 1.7% on bioconductor.org
3 versions - Latest release: 8 days ago - 41 dependent packages - 800 thousand downloads total - 3 maintainers
sva 3.52.0
Surrogate Variable Analysis3 versions - Latest release: 8 days ago - 41 dependent packages - 800 thousand downloads total - 3 maintainers
Top 1.0% on bioconductor.org
3 versions - Latest release: 8 days ago - 39 dependent packages - 2.95 million downloads total - 1 maintainer
MatrixGenerics 1.16.0
S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects3 versions - Latest release: 8 days ago - 39 dependent packages - 2.95 million downloads total - 1 maintainer
Top 3.3% on bioconductor.org
3 versions - Latest release: 9 days ago - 37 dependent packages - 1.06 million downloads total - 33 stars on GitHub - 1 maintainer
ensembldb 2.28.0
Utilities to create and use Ensembl-based annotation databases3 versions - Latest release: 9 days ago - 37 dependent packages - 1.06 million downloads total - 33 stars on GitHub - 1 maintainer
Top 1.0% on bioconductor.org
3 versions - Latest release: 6 days ago - 37 dependent packages - 1.16 million downloads total - 344 stars on GitHub - 1 maintainer
fgsea 1.30.0
Fast Gene Set Enrichment Analysis3 versions - Latest release: 6 days ago - 37 dependent packages - 1.16 million downloads total - 344 stars on GitHub - 1 maintainer
Top 1.3% on bioconductor.org
3 versions - Latest release: 8 days ago - 36 dependent packages - 1.63 million downloads total - 1 maintainer
ShortRead 1.62.0
FASTQ input and manipulation3 versions - Latest release: 8 days ago - 36 dependent packages - 1.63 million downloads total - 1 maintainer
Top 1.2% on bioconductor.org
3 versions - Latest release: 8 days ago - 36 dependent packages - 2 million downloads total - 1 maintainer
multtest 2.60.0
Resampling-based multiple hypothesis testing3 versions - Latest release: 8 days ago - 36 dependent packages - 2 million downloads total - 1 maintainer
Top 0.9% on bioconductor.org
3 versions - Latest release: 8 days ago - 35 dependent packages - 5.98 million downloads total - 1 maintainer
XVector 0.44.0
Foundation of external vector representation and manipulation in Bioconductor3 versions - Latest release: 8 days ago - 35 dependent packages - 5.98 million downloads total - 1 maintainer
Top 1.2% on bioconductor.org
3 versions - Latest release: 8 days ago - 34 dependent packages - 2.38 million downloads total - 1 maintainer
KEGGREST 1.44.0
Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)3 versions - Latest release: 8 days ago - 34 dependent packages - 2.38 million downloads total - 1 maintainer
Top 1.4% on bioconductor.org
3 versions - Latest release: 8 days ago - 33 dependent packages - 1.47 million downloads total - 1 maintainer
RBGL 1.80.0
An interface to the BOOST graph library3 versions - Latest release: 8 days ago - 33 dependent packages - 1.47 million downloads total - 1 maintainer
Top 1.9% on bioconductor.org
3 versions - Latest release: 9 days ago - 31 dependent packages - 787 thousand downloads total - 56 stars on GitHub - 1 maintainer
minfi 1.50.0
Analyze Illumina Infinium DNA methylation arrays3 versions - Latest release: 9 days ago - 31 dependent packages - 787 thousand downloads total - 56 stars on GitHub - 1 maintainer
Top 1.9% on bioconductor.org
4 versions - Latest release: 10 days ago - 30 dependent packages - 394 thousand downloads total - 119 stars on GitHub - 1 maintainer
MSnbase 2.30.1
Base Functions and Classes for Mass Spectrometry and Proteomics4 versions - Latest release: 10 days ago - 30 dependent packages - 394 thousand downloads total - 119 stars on GitHub - 1 maintainer
Top 2.0% on bioconductor.org
2 versions - Latest release: 7 months ago - 29 dependent packages - 592 thousand downloads total - 1 maintainer
DNAcopy 1.76.0
DNA Copy Number Data Analysis2 versions - Latest release: 7 months ago - 29 dependent packages - 592 thousand downloads total - 1 maintainer
Top 1.7% on bioconductor.org
3 versions - Latest release: 8 days ago - 29 dependent packages - 890 thousand downloads total - 1 maintainer
vsn 3.72.0
Variance stabilization and calibration for microarray data3 versions - Latest release: 8 days ago - 29 dependent packages - 890 thousand downloads total - 1 maintainer
Top 2.1% on bioconductor.org
2 versions - Latest release: 7 months ago - 29 dependent packages - 533 thousand downloads total - 1 maintainer
scuttle 1.12.0
Single-Cell RNA-Seq Analysis Utilities2 versions - Latest release: 7 months ago - 29 dependent packages - 533 thousand downloads total - 1 maintainer
Top 9.3% on bioconductor.org
3 versions - Latest release: 9 days ago - 27 dependent packages - 691 thousand downloads total - 6 stars on GitHub - 1 maintainer
BiocSingular 1.20.0
Singular Value Decomposition for Bioconductor Packages3 versions - Latest release: 9 days ago - 27 dependent packages - 691 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 0.9% on bioconductor.org
4 versions - Latest release: 8 days ago - 27 dependent packages - 6.42 million downloads total - 1 maintainer
zlibbioc 1.50.0
An R packaged zlib-1.2.54 versions - Latest release: 8 days ago - 27 dependent packages - 6.42 million downloads total - 1 maintainer
Top 6.1% on bioconductor.org
3 versions - Latest release: 5 days ago - 27 dependent packages - 57.5 thousand downloads total - 45 stars on GitHub - 1 maintainer
SpatialExperiment 1.14.0
S4 Class for Spatially Resolved -omics Data3 versions - Latest release: 5 days ago - 27 dependent packages - 57.5 thousand downloads total - 45 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
5 versions - Latest release: 1 day ago - 26 dependent packages - 143 thousand downloads total - 24 stars on GitHub - 1 maintainer
basilisk 1.16.0
Freezing Python Dependencies Inside Bioconductor Packages5 versions - Latest release: 1 day ago - 26 dependent packages - 143 thousand downloads total - 24 stars on GitHub - 1 maintainer
Top 1.6% on bioconductor.org
5 versions - Latest release: 8 days ago - 25 dependent packages - 1.23 million downloads total - 1 maintainer
DOSE 3.30.0
Disease Ontology Semantic and Enrichment analysis5 versions - Latest release: 8 days ago - 25 dependent packages - 1.23 million downloads total - 1 maintainer
Top 2.3% on bioconductor.org
2 versions - Latest release: 6 months ago - 25 dependent packages - 458 thousand downloads total - 1 maintainer
topGO 2.54.0
Enrichment Analysis for Gene Ontology2 versions - Latest release: 6 months ago - 25 dependent packages - 458 thousand downloads total - 1 maintainer
Top 1.7% on bioconductor.org
4 versions - Latest release: 8 days ago - 25 dependent packages - 1.14 million downloads total - 1 maintainer
ggtree 3.12.0
an R package for visualization of tree and annotation data4 versions - Latest release: 8 days ago - 25 dependent packages - 1.14 million downloads total - 1 maintainer
Top 2.2% on bioconductor.org
3 versions - Latest release: 6 months ago - 24 dependent packages - 439 thousand downloads total - 109 stars on GitHub - 1 maintainer
ggbio 1.50.0
Visualization tools for genomic data3 versions - Latest release: 6 months ago - 24 dependent packages - 439 thousand downloads total - 109 stars on GitHub - 1 maintainer
Top 2.3% on bioconductor.org
2 versions - Latest release: 7 months ago - 23 dependent packages - 501 thousand downloads total - 1 maintainer
GOstats 2.68.0
Tools for manipulating GO and microarrays2 versions - Latest release: 7 months ago - 23 dependent packages - 501 thousand downloads total - 1 maintainer
Top 2.5% on bioconductor.org
3 versions - Latest release: 9 days ago - 23 dependent packages - 954 thousand downloads total - 40 stars on GitHub - 1 maintainer
mzR 2.38.0
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)3 versions - Latest release: 9 days ago - 23 dependent packages - 954 thousand downloads total - 40 stars on GitHub - 1 maintainer
Top 2.1% on bioconductor.org
2 versions - Latest release: 7 months ago - 21 dependent packages - 687 thousand downloads total - 1 maintainer
phyloseq 1.46.0
Handling and analysis of high-throughput microbiome census data2 versions - Latest release: 7 months ago - 21 dependent packages - 687 thousand downloads total - 1 maintainer
Top 2.2% on bioconductor.org
2 versions - Latest release: 7 months ago - 21 dependent packages - 547 thousand downloads total - 1 maintainer
marray 1.80.0
Exploratory analysis for two-color spotted microarray data2 versions - Latest release: 7 months ago - 21 dependent packages - 547 thousand downloads total - 1 maintainer
Top 3.7% on bioconductor.org
3 versions - Latest release: 1 day ago - 20 dependent packages - 109 thousand downloads total - 1 maintainer
InteractionSet 1.32.0
Base Classes for Storing Genomic Interaction Data3 versions - Latest release: 1 day ago - 20 dependent packages - 109 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
3 versions - Latest release: about 19 hours ago - 19 dependent packages - 74.9 thousand downloads total - 127 stars on GitHub - 1 maintainer
plyranges 1.24.0
A fluent interface for manipulating GenomicRanges3 versions - Latest release: about 19 hours ago - 19 dependent packages - 74.9 thousand downloads total - 127 stars on GitHub - 1 maintainer
Top 7.0% on bioconductor.org
3 versions - Latest release: 2 days ago - 19 dependent packages - 979 thousand downloads total - 7 stars on GitHub - 1 maintainer
ProtGenerics 1.36.0
Generic infrastructure for Bioconductor mass spectrometry packages3 versions - Latest release: 2 days ago - 19 dependent packages - 979 thousand downloads total - 7 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
3 versions - Latest release: 5 months ago - 19 dependent packages - 152 thousand downloads total - 16 stars on GitHub - 1 maintainer
MsCoreUtils 1.14.1
Core Utils for Mass Spectrometry Data3 versions - Latest release: 5 months ago - 19 dependent packages - 152 thousand downloads total - 16 stars on GitHub - 1 maintainer
Top 3.5% on bioconductor.org
2 versions - Latest release: 7 months ago - 19 dependent packages - 579 thousand downloads total - 44 stars on GitHub - 1 maintainer
pcaMethods 1.94.0
A collection of PCA methods2 versions - Latest release: 7 months ago - 19 dependent packages - 579 thousand downloads total - 44 stars on GitHub - 1 maintainer
Top 8.6% on bioconductor.org
3 versions - Latest release: 9 days ago - 19 dependent packages - 815 thousand downloads total - 4 stars on GitHub - 1 maintainer
AnnotationFilter 1.28.0
Facilities for Filtering Bioconductor Annotation Resources3 versions - Latest release: 9 days ago - 19 dependent packages - 815 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
3 versions - Latest release: about 17 hours ago - 18 dependent packages - 211 thousand downloads total - 18 stars on GitHub - 1 maintainer
gdsfmt 1.40.0
R Interface to CoreArray Genomic Data Structure (GDS) Files3 versions - Latest release: about 17 hours ago - 18 dependent packages - 211 thousand downloads total - 18 stars on GitHub - 1 maintainer
Top 2.4% on bioconductor.org
3 versions - Latest release: 9 days ago - 18 dependent packages - 500 thousand downloads total - 67 stars on GitHub - 1 maintainer
EBImage 4.46.0
Image processing and analysis toolbox for R3 versions - Latest release: 9 days ago - 18 dependent packages - 500 thousand downloads total - 67 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
3 versions - Latest release: 2 days ago - 17 dependent packages - 288 thousand downloads total - 23 stars on GitHub - 1 maintainer
TFBSTools 1.42.0
Software Package for Transcription Factor Binding Site (TFBS) Analysis3 versions - Latest release: 2 days ago - 17 dependent packages - 288 thousand downloads total - 23 stars on GitHub - 1 maintainer
Top 3.6% on bioconductor.org
3 versions - Latest release: 2 days ago - 17 dependent packages - 102 thousand downloads total - 1 maintainer
MotifDb 1.46.0
An Annotated Collection of Protein-DNA Binding Sequence Motifs3 versions - Latest release: 2 days ago - 17 dependent packages - 102 thousand downloads total - 1 maintainer
Top 2.4% on bioconductor.org
3 versions - Latest release: 4 months ago - 16 dependent packages - 616 thousand downloads total - 1 maintainer
BiocNeighbors 1.20.2
Nearest Neighbor Detection for Bioconductor Packages3 versions - Latest release: 4 months ago - 16 dependent packages - 616 thousand downloads total - 1 maintainer
Top 4.2% on bioconductor.org
3 versions - Latest release: 6 days ago - 15 dependent packages - 75.9 thousand downloads total - 47 stars on GitHub - 1 maintainer
RCy3 2.24.0
Functions to Access and Control Cytoscape3 versions - Latest release: 6 days ago - 15 dependent packages - 75.9 thousand downloads total - 47 stars on GitHub - 1 maintainer
Top 1.9% on bioconductor.org
3 versions - Latest release: 8 days ago - 15 dependent packages - 1.17 million downloads total - 1 maintainer
enrichplot 1.24.0
Visualization of Functional Enrichment Result3 versions - Latest release: 8 days ago - 15 dependent packages - 1.17 million downloads total - 1 maintainer
Top 1.5% on bioconductor.org
5 versions - Latest release: 8 days ago - 15 dependent packages - 851 thousand downloads total - 157 stars on GitHub - 1 maintainer
xcms 4.2.0
LC-MS and GC-MS Data Analysis5 versions - Latest release: 8 days ago - 15 dependent packages - 851 thousand downloads total - 157 stars on GitHub - 1 maintainer
Top 8.6% on bioconductor.org
3 versions - Latest release: 2 days ago - 15 dependent packages - 46.7 thousand downloads total - 31 stars on GitHub - 1 maintainer
Spectra 1.14.0
Spectra Infrastructure for Mass Spectrometry Data3 versions - Latest release: 2 days ago - 15 dependent packages - 46.7 thousand downloads total - 31 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
2 versions - Latest release: 6 months ago - 15 dependent packages - 395 thousand downloads total - 1 maintainer
snpStats 1.52.0
SnpMatrix and XSnpMatrix classes and methods2 versions - Latest release: 6 months ago - 15 dependent packages - 395 thousand downloads total - 1 maintainer
Top 4.7% on bioconductor.org
2 versions - Latest release: 6 months ago - 15 dependent packages - 394 thousand downloads total - 15 stars on GitHub - 1 maintainer
bumphunter 1.44.0
Bump Hunter2 versions - Latest release: 6 months ago - 15 dependent packages - 394 thousand downloads total - 15 stars on GitHub - 1 maintainer
Top 2.2% on bioconductor.org
7 versions - Latest release: 2 days ago - 15 dependent packages - 382 thousand downloads total - 164 stars on GitHub - 1 maintainer
GSVA 1.52.1
Gene Set Variation Analysis for Microarray and RNA-Seq Data7 versions - Latest release: 2 days ago - 15 dependent packages - 382 thousand downloads total - 164 stars on GitHub - 1 maintainer
Top 8.0% on bioconductor.org
4 versions - Latest release: 2 days ago - 14 dependent packages - 919 thousand downloads total - 4 stars on GitHub - 1 maintainer
beachmat 2.20.0
Compiling Bioconductor to Handle Each Matrix Type4 versions - Latest release: 2 days ago - 14 dependent packages - 919 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 1.8% on bioconductor.org
4 versions - Latest release: 5 days ago - 14 dependent packages - 311 thousand downloads total - 2 maintainers
Rsubread 2.18.0
Mapping, quantification and variant analysis of sequencing data4 versions - Latest release: 5 days ago - 14 dependent packages - 311 thousand downloads total - 2 maintainers
Top 2.1% on bioconductor.org
2 versions - Latest release: 7 months ago - 14 dependent packages - 1.04 million downloads total - 1 maintainer
biovizBase 1.50.0
Basic graphic utilities for visualization of genomic data.2 versions - Latest release: 7 months ago - 14 dependent packages - 1.04 million downloads total - 1 maintainer
Top 1.8% on bioconductor.org
3 versions - Latest release: 5 days ago - 13 dependent packages - 344 thousand downloads total - 4 stars on GitHub - 1 maintainer
seqLogo 1.70.0
Sequence logos for DNA sequence alignments3 versions - Latest release: 5 days ago - 13 dependent packages - 344 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 2.6% on bioconductor.org
2 versions - Latest release: 6 months ago - 13 dependent packages - 513 thousand downloads total - 1 maintainer
Category 2.68.0
Category Analysis2 versions - Latest release: 6 months ago - 13 dependent packages - 513 thousand downloads total - 1 maintainer
Top 2.1% on bioconductor.org
3 versions - Latest release: 4 months ago - 13 dependent packages - 1.15 million downloads total - 1 maintainer
GOSemSim 2.28.1
GO-terms Semantic Similarity Measures3 versions - Latest release: 4 months ago - 13 dependent packages - 1.15 million downloads total - 1 maintainer
Top 2.3% on bioconductor.org
2 versions - Latest release: 6 months ago - 13 dependent packages - 354 thousand downloads total - 130 stars on GitHub - 1 maintainer
tximport 1.30.0
Import and summarize transcript-level estimates for transcript- and gene-level analysis2 versions - Latest release: 6 months ago - 13 dependent packages - 354 thousand downloads total - 130 stars on GitHub - 1 maintainer
Top 2.3% on bioconductor.org
6 versions - Latest release: 2 days ago - 13 dependent packages - 263 thousand downloads total - 2 maintainers
flowWorkspace 4.16.0
Infrastructure for representing and interacting with gated and ungated cytometry data sets.6 versions - Latest release: 2 days ago - 13 dependent packages - 263 thousand downloads total - 2 maintainers
Top 3.7% on bioconductor.org
3 versions - Latest release: 2 days ago - 12 dependent packages - 201 thousand downloads total - 34 stars on GitHub - 1 maintainer
bsseq 1.40.0
Analyze, manage and store bisulfite sequencing data3 versions - Latest release: 2 days ago - 12 dependent packages - 201 thousand downloads total - 34 stars on GitHub - 1 maintainer
Top 4.7% on bioconductor.org
4 versions - Latest release: 1 day ago - 12 dependent packages - 99.9 thousand downloads total - 1 maintainer
STRINGdb 2.16.0
STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis4 versions - Latest release: 1 day ago - 12 dependent packages - 99.9 thousand downloads total - 1 maintainer