Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org packages
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Top 3.8% on bioconductor.org
3 versions - Latest release: 1 day ago - 6 dependent packages - 122 thousand downloads total - 1 maintainer
baySeq 2.38.0
Empirical Bayesian analysis of patterns of differential expression in count data3 versions - Latest release: 1 day ago - 6 dependent packages - 122 thousand downloads total - 1 maintainer
Top 5.5% on bioconductor.org
3 versions - Latest release: 1 day ago - 51.4 thousand downloads total - 1 stars on GitHub - 2 maintainers
dupRadar 1.34.0
Assessment of duplication rates in RNA-Seq datasets3 versions - Latest release: 1 day ago - 51.4 thousand downloads total - 1 stars on GitHub - 2 maintainers
timeOmics 1.16.0
Time-Course Multi-Omics data integration3 versions - Latest release: 1 day ago - 1 dependent package - 5.04 thousand downloads total - 21 stars on GitHub - 1 maintainer
Top 5.9% on bioconductor.org
3 versions - Latest release: 1 day ago - 41.6 thousand downloads total - 1 maintainer
OCplus 1.78.0
Operating characteristics plus sample size and local fdr for microarray experiments3 versions - Latest release: 1 day ago - 41.6 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
5 versions - Latest release: 1 day ago - 26 dependent packages - 143 thousand downloads total - 24 stars on GitHub - 1 maintainer
basilisk 1.16.0
Freezing Python Dependencies Inside Bioconductor Packages5 versions - Latest release: 1 day ago - 26 dependent packages - 143 thousand downloads total - 24 stars on GitHub - 1 maintainer
Top 4.6% on bioconductor.org
3 versions - Latest release: 1 day ago - 3 dependent packages - 63.7 thousand downloads total - 1 maintainer
sangerseqR 1.40.0
Tools for Sanger Sequencing Data in R3 versions - Latest release: 1 day ago - 3 dependent packages - 63.7 thousand downloads total - 1 maintainer
Top 3.5% on bioconductor.org
2 versions - Latest release: 6 months ago - 2 dependent packages - 86.1 thousand downloads total - 1 maintainer
Ringo 1.66.0 removed
R Investigation of ChIP-chip Oligoarrays2 versions - Latest release: 6 months ago - 2 dependent packages - 86.1 thousand downloads total - 1 maintainer
benchdamic 1.10.0
Benchmark of differential abundance methods on microbiome data5 versions - Latest release: 1 day ago - 3.07 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 4.6% on bioconductor.org
3 versions - Latest release: 1 day ago - 4 dependent packages - 115 thousand downloads total - 1 maintainer
chipseq 1.54.0
chipseq: A package for analyzing chipseq data3 versions - Latest release: 1 day ago - 4 dependent packages - 115 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
3 versions - Latest release: 1 day ago - 3 dependent packages - 69.9 thousand downloads total - 3 maintainers
crlmm 1.62.0
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumin...3 versions - Latest release: 1 day ago - 3 dependent packages - 69.9 thousand downloads total - 3 maintainers
Top 5.6% on bioconductor.org
3 versions - Latest release: 1 day ago - 1 dependent package - 42.8 thousand downloads total - 0 stars on GitHub - 1 maintainer
PICS 2.48.0
Probabilistic inference of ChIP-seq3 versions - Latest release: 1 day ago - 1 dependent package - 42.8 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 4.6% on bioconductor.org
3 versions - Latest release: 1 day ago - 7 dependent packages - 93.9 thousand downloads total - 12 stars on GitHub - 1 maintainer
bamsignals 1.36.0
Extract read count signals from bam files3 versions - Latest release: 1 day ago - 7 dependent packages - 93.9 thousand downloads total - 12 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
3 versions - Latest release: 1 day ago - 1 dependent package - 64.3 thousand downloads total - 1 maintainer
HMMcopy 1.46.0
Copy number prediction with correction for GC and mappability bias for HTS data3 versions - Latest release: 1 day ago - 1 dependent package - 64.3 thousand downloads total - 1 maintainer
Top 4.5% on bioconductor.org
4 versions - Latest release: 1 day ago - 2 dependent packages - 125 thousand downloads total - 1 maintainer
basilisk.utils 1.16.0
Basilisk Installation Utilities4 versions - Latest release: 1 day ago - 2 dependent packages - 125 thousand downloads total - 1 maintainer
Top 4.9% on bioconductor.org
3 versions - Latest release: 1 day ago - 3 dependent packages - 52.4 thousand downloads total - 1 maintainer
rsbml 2.62.0
R support for SBML, using libsbml3 versions - Latest release: 1 day ago - 3 dependent packages - 52.4 thousand downloads total - 1 maintainer
Top 3.2% on bioconductor.org
3 versions - Latest release: 1 day ago - 5 dependent packages - 196 thousand downloads total - 1 maintainer
beadarray 2.54.0
Quality assessment and low-level analysis for Illumina BeadArray data3 versions - Latest release: 1 day ago - 5 dependent packages - 196 thousand downloads total - 1 maintainer
Top 2.8% on bioconductor.org
3 versions - Latest release: 1 day ago - 7 dependent packages - 208 thousand downloads total - 1 maintainer
DECIPHER 3.0.0
Tools for curating, analyzing, and manipulating biological sequences3 versions - Latest release: 1 day ago - 7 dependent packages - 208 thousand downloads total - 1 maintainer
Top 2.2% on bioconductor.org
3 versions - Latest release: 1 day ago - 12 dependent packages - 217 thousand downloads total - 1 maintainer
regioneR 1.36.0
Association analysis of genomic regions based on permutation tests3 versions - Latest release: 1 day ago - 12 dependent packages - 217 thousand downloads total - 1 maintainer
iNETgrate 1.2.0
Integrates DNA methylation data with gene expression in a single gene network2 versions - Latest release: 1 day ago - 970 downloads total - 65 stars on GitHub - 1 maintainer
Top 3.0% on bioconductor.org
3 versions - Latest release: 1 day ago - 10 dependent packages - 148 thousand downloads total - 62 stars on GitHub - 1 maintainer
metagenomeSeq 1.46.0
Statistical analysis for sparse high-throughput sequencing3 versions - Latest release: 1 day ago - 10 dependent packages - 148 thousand downloads total - 62 stars on GitHub - 1 maintainer
Top 5.4% on bioconductor.org
4 versions - Latest release: 1 day ago - 1 dependent package - 83.2 thousand downloads total - 1 maintainer
densvis 1.14.0
Density-Preserving Data Visualization via Non-Linear Dimensionality Reduction4 versions - Latest release: 1 day ago - 1 dependent package - 83.2 thousand downloads total - 1 maintainer
Top 3.8% on bioconductor.org
3 versions - Latest release: 1 day ago - 2 dependent packages - 96.7 thousand downloads total - 1 maintainer
MLInterfaces 1.84.0
Uniform interfaces to R machine learning procedures for data in Bioconductor containers3 versions - Latest release: 1 day ago - 2 dependent packages - 96.7 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
3 versions - Latest release: 1 day ago - 7 dependent packages - 64.9 thousand downloads total - 1 maintainer
gwascat 2.36.0
representing and modeling data in the EMBL-EBI GWAS catalog3 versions - Latest release: 1 day ago - 7 dependent packages - 64.9 thousand downloads total - 1 maintainer
Top 3.7% on bioconductor.org
3 versions - Latest release: 1 day ago - 98.9 thousand downloads total - 1 maintainer
DEGseq 1.58.0
Identify Differentially Expressed Genes from RNA-seq data3 versions - Latest release: 1 day ago - 98.9 thousand downloads total - 1 maintainer
Top 4.7% on bioconductor.org
3 versions - Latest release: 1 day ago - 3 dependent packages - 66.4 thousand downloads total - 1 maintainer
HilbertVis 1.62.0
Hilbert curve visualization3 versions - Latest release: 1 day ago - 3 dependent packages - 66.4 thousand downloads total - 1 maintainer
Top 3.1% on bioconductor.org
3 versions - Latest release: 1 day ago - 4 dependent packages - 106 thousand downloads total - 1 maintainer
RankProd 3.30.0
Rank Product method for identifying differentially expressed genes with application in meta-analysis3 versions - Latest release: 1 day ago - 4 dependent packages - 106 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
3 versions - Latest release: 1 day ago - 6 dependent packages - 220 thousand downloads total - 1 maintainer
globaltest 5.58.0
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications...3 versions - Latest release: 1 day ago - 6 dependent packages - 220 thousand downloads total - 1 maintainer
Top 3.4% on bioconductor.org
3 versions - Latest release: 1 day ago - 1 dependent package - 89.7 thousand downloads total - 1 maintainer
rGADEM 2.52.0
de novo motif discovery3 versions - Latest release: 1 day ago - 1 dependent package - 89.7 thousand downloads total - 1 maintainer
Top 4.7% on bioconductor.org
4 versions - Latest release: 1 day ago - 12 dependent packages - 99.9 thousand downloads total - 1 maintainer
STRINGdb 2.16.0
STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis4 versions - Latest release: 1 day ago - 12 dependent packages - 99.9 thousand downloads total - 1 maintainer
Top 3.0% on bioconductor.org
3 versions - Latest release: 1 day ago - 7 dependent packages - 157 thousand downloads total - 2 maintainers
flowClust 3.42.0
Clustering for Flow Cytometry3 versions - Latest release: 1 day ago - 7 dependent packages - 157 thousand downloads total - 2 maintainers
tidybulk 1.16.0
Brings transcriptomics to the tidyverse5 versions - Latest release: 1 day ago - 9.77 thousand downloads total - 159 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
3 versions - Latest release: 1 day ago - 5 dependent packages - 122 thousand downloads total - 3 maintainers
missMethyl 1.38.0
Analysing Illumina HumanMethylation BeadChip Data3 versions - Latest release: 1 day ago - 5 dependent packages - 122 thousand downloads total - 3 maintainers
Top 3.5% on bioconductor.org
3 versions - Latest release: 1 day ago - 1 dependent package - 134 thousand downloads total - 22 stars on GitHub - 1 maintainer
Glimma 2.14.0
Interactive visualizations for gene expression analysis3 versions - Latest release: 1 day ago - 1 dependent package - 134 thousand downloads total - 22 stars on GitHub - 1 maintainer
Top 5.9% on bioconductor.org
3 versions - Latest release: 1 day ago - 6 dependent packages - 83.5 thousand downloads total - 41 stars on GitHub - 1 maintainer
zinbwave 1.26.0
Zero-Inflated Negative Binomial Model for RNA-Seq Data3 versions - Latest release: 1 day ago - 6 dependent packages - 83.5 thousand downloads total - 41 stars on GitHub - 1 maintainer
Top 2.6% on bioconductor.org
3 versions - Latest release: 1 day ago - 8 dependent packages - 214 thousand downloads total - 1 maintainer
mixOmics 6.28.0
Omics Data Integration Project3 versions - Latest release: 1 day ago - 8 dependent packages - 214 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
3 versions - Latest release: 1 day ago - 5 dependent packages - 218 thousand downloads total - 2 maintainers
goseq 1.56.0
Gene Ontology analyser for RNA-seq and other length biased data3 versions - Latest release: 1 day ago - 5 dependent packages - 218 thousand downloads total - 2 maintainers
Top 6.0% on bioconductor.org
3 versions - Latest release: 1 day ago - 3 dependent packages - 201 thousand downloads total - 1 maintainer
widgetTools 1.82.0
Creates an interactive tcltk widget3 versions - Latest release: 1 day ago - 3 dependent packages - 201 thousand downloads total - 1 maintainer
Top 4.0% on bioconductor.org
3 versions - Latest release: 1 day ago - 98.3 thousand downloads total - 1 maintainer
GlobalAncova 4.22.0
Global test for groups of variables via model comparisons3 versions - Latest release: 1 day ago - 98.3 thousand downloads total - 1 maintainer
Top 5.7% on bioconductor.org
3 versions - Latest release: 1 day ago - 4 dependent packages - 50.5 thousand downloads total - 1 maintainer
cqn 1.50.0
Conditional quantile normalization3 versions - Latest release: 1 day ago - 4 dependent packages - 50.5 thousand downloads total - 1 maintainer
Top 3.7% on bioconductor.org
3 versions - Latest release: 1 day ago - 12 dependent packages - 201 thousand downloads total - 34 stars on GitHub - 1 maintainer
bsseq 1.40.0
Analyze, manage and store bisulfite sequencing data3 versions - Latest release: 1 day ago - 12 dependent packages - 201 thousand downloads total - 34 stars on GitHub - 1 maintainer
Top 4.2% on bioconductor.org
3 versions - Latest release: 1 day ago - 5 dependent packages - 83.4 thousand downloads total - 1 maintainer
GLAD 2.68.0
Gain and Loss Analysis of DNA3 versions - Latest release: 1 day ago - 5 dependent packages - 83.4 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
3 versions - Latest release: 1 day ago - 5 dependent packages - 267 thousand downloads total - 1 maintainer
DirichletMultinomial 1.46.0
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data3 versions - Latest release: 1 day ago - 5 dependent packages - 267 thousand downloads total - 1 maintainer
Top 4.1% on bioconductor.org
3 versions - Latest release: 1 day ago - 1 dependent package - 65 thousand downloads total - 1 maintainer
plier 1.74.0
Implements the Affymetrix PLIER algorithm3 versions - Latest release: 1 day ago - 1 dependent package - 65 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
3 versions - Latest release: 1 day ago - 58.2 thousand downloads total - 1 maintainer
affycomp 1.80.0
Graphics Toolbox for Assessment of Affymetrix Expression Measures3 versions - Latest release: 1 day ago - 58.2 thousand downloads total - 1 maintainer
Top 5.4% on bioconductor.org
3 versions - Latest release: 1 day ago - 5 dependent packages - 132 thousand downloads total - 1 maintainer
wateRmelon 2.10.0
Illumina 450 and EPIC methylation array normalization and metrics3 versions - Latest release: 1 day ago - 5 dependent packages - 132 thousand downloads total - 1 maintainer
Top 5.1% on bioconductor.org
3 versions - Latest release: 1 day ago - 1 dependent package - 41.6 thousand downloads total - 1 maintainer
ACME 2.60.0
Algorithms for Calculating Microarray Enrichment (ACME)3 versions - Latest release: 1 day ago - 1 dependent package - 41.6 thousand downloads total - 1 maintainer
Top 4.1% on bioconductor.org
3 versions - Latest release: 1 day ago - 12 dependent packages - 72.4 thousand downloads total - 4 stars on GitHub - 1 maintainer
RaggedExperiment 1.28.0
Representation of Sparse Experiments and Assays Across Samples3 versions - Latest release: 1 day ago - 12 dependent packages - 72.4 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 5.3% on bioconductor.org
3 versions - Latest release: 1 day ago - 54.3 thousand downloads total - 2 maintainers
LEA 3.16.0
LEA: an R package for Landscape and Ecological Association Studies3 versions - Latest release: 1 day ago - 54.3 thousand downloads total - 2 maintainers
Top 4.5% on bioconductor.org
3 versions - Latest release: 1 day ago - 17 dependent packages - 288 thousand downloads total - 23 stars on GitHub - 1 maintainer
TFBSTools 1.42.0
Software Package for Transcription Factor Binding Site (TFBS) Analysis3 versions - Latest release: 1 day ago - 17 dependent packages - 288 thousand downloads total - 23 stars on GitHub - 1 maintainer
Top 5.9% on bioconductor.org
3 versions - Latest release: 1 day ago - 3 dependent packages - 204 thousand downloads total - 1 maintainer
systemPipeR 2.10.0
systemPipeR: workflow management and report generation environment3 versions - Latest release: 1 day ago - 3 dependent packages - 204 thousand downloads total - 1 maintainer
Top 3.3% on bioconductor.org
3 versions - Latest release: 1 day ago - 12 dependent packages - 154 thousand downloads total - 1 maintainer
GenomicFiles 1.40.0
Distributed computing by file or by range3 versions - Latest release: 1 day ago - 12 dependent packages - 154 thousand downloads total - 1 maintainer
Top 5.4% on bioconductor.org
3 versions - Latest release: 1 day ago - 44.5 thousand downloads total - 1 maintainer
OmicCircos 1.42.0
High-quality circular visualization of omics data3 versions - Latest release: 1 day ago - 44.5 thousand downloads total - 1 maintainer
Top 3.6% on bioconductor.org
3 versions - Latest release: 1 day ago - 1 dependent package - 145 thousand downloads total - 1 maintainer
BeadDataPackR 1.56.0
Compression of Illumina BeadArray data3 versions - Latest release: 1 day ago - 1 dependent package - 145 thousand downloads total - 1 maintainer
Top 3.4% on bioconductor.org
3 versions - Latest release: 1 day ago - 5 dependent packages - 122 thousand downloads total - 1 maintainer
Mfuzz 2.64.0
Soft clustering of time series gene expression data3 versions - Latest release: 1 day ago - 5 dependent packages - 122 thousand downloads total - 1 maintainer
Top 5.9% on bioconductor.org
2 versions - Latest release: 6 months ago - 39 thousand downloads total - 20 stars on GitHub - 1 maintainer
qrqc 1.56.0 removed
Quick Read Quality Control2 versions - Latest release: 6 months ago - 39 thousand downloads total - 20 stars on GitHub - 1 maintainer
Top 7.0% on bioconductor.org
5 versions - Latest release: 1 day ago - 3 dependent packages - 1.85 million downloads total - 6 stars on GitHub - 1 maintainer
Rhdf5lib 1.26.0
hdf5 library as an R package5 versions - Latest release: 1 day ago - 3 dependent packages - 1.85 million downloads total - 6 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
3 versions - Latest release: 1 day ago - 4 dependent packages - 69.5 thousand downloads total - 1 maintainer
convert 1.80.0
Convert Microarray Data Objects3 versions - Latest release: 1 day ago - 4 dependent packages - 69.5 thousand downloads total - 1 maintainer
Top 4.1% on bioconductor.org
3 versions - Latest release: 1 day ago - 4 dependent packages - 95.1 thousand downloads total - 13 stars on GitHub - 1 maintainer
GWASTools 1.50.0
Tools for Genome Wide Association Studies3 versions - Latest release: 1 day ago - 4 dependent packages - 95.1 thousand downloads total - 13 stars on GitHub - 1 maintainer
Top 3.6% on bioconductor.org
3 versions - Latest release: 1 day ago - 3 dependent packages - 148 thousand downloads total - 141 stars on GitHub - 1 maintainer
ballgown 2.36.0
Flexible, isoform-level differential expression analysis3 versions - Latest release: 1 day ago - 3 dependent packages - 148 thousand downloads total - 141 stars on GitHub - 1 maintainer
SparseSignatures 2.14.0
SparseSignatures3 versions - Latest release: 4 days ago - 7.65 thousand downloads total - 10 stars on GitHub - 1 maintainer
SIMLR 1.30.0
Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)3 versions - Latest release: 4 days ago - 1 dependent package - 24.5 thousand downloads total - 106 stars on GitHub - 1 maintainer
Top 4.0% on bioconductor.org
3 versions - Latest release: 1 day ago - 3 dependent packages - 75.9 thousand downloads total - 24 stars on GitHub - 1 maintainer
ALDEx2 1.36.0
Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account3 versions - Latest release: 1 day ago - 3 dependent packages - 75.9 thousand downloads total - 24 stars on GitHub - 1 maintainer
Top 3.8% on bioconductor.org
3 versions - Latest release: 1 day ago - 9 dependent packages - 83.4 thousand downloads total - 1 maintainer
ropls 1.36.0
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data3 versions - Latest release: 1 day ago - 9 dependent packages - 83.4 thousand downloads total - 1 maintainer
mitoClone2 1.10.0
Clonal Population Identification in Single-Cell RNA-Seq Data using Mitochondrial and Somatic Muta...4 versions - Latest release: 1 day ago - 2.32 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
3 versions - Latest release: 8 days ago - 7 dependent packages - 33.6 thousand downloads total - 218 stars on GitHub - 1 maintainer
iSEE 2.16.0
Interactive SummarizedExperiment Explorer3 versions - Latest release: 8 days ago - 7 dependent packages - 33.6 thousand downloads total - 218 stars on GitHub - 1 maintainer
OUTRIDER 1.22.0
OUTRIDER - OUTlier in RNA-Seq fInDER3 versions - Latest release: 1 day ago - 1 dependent package - 15.7 thousand downloads total - 45 stars on GitHub - 1 maintainer
Top 5.8% on bioconductor.org
3 versions - Latest release: 1 day ago - 3 dependent packages - 48.5 thousand downloads total - 1 maintainer
fabia 2.50.0
FABIA: Factor Analysis for Bicluster Acquisition3 versions - Latest release: 1 day ago - 3 dependent packages - 48.5 thousand downloads total - 1 maintainer
Top 5.9% on bioconductor.org
3 versions - Latest release: 1 day ago - 44.2 thousand downloads total - 1 maintainer
muscle 3.46.0
Multiple Sequence Alignment with MUSCLE3 versions - Latest release: 1 day ago - 44.2 thousand downloads total - 1 maintainer
Top 2.4% on bioconductor.org
3 versions - Latest release: 1 day ago - 9 dependent packages - 234 thousand downloads total - 1 maintainer
DEXSeq 1.50.0
Inference of differential exon usage in RNA-Seq3 versions - Latest release: 1 day ago - 9 dependent packages - 234 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
3 versions - Latest release: 1 day ago - 1 dependent package - 85.1 thousand downloads total - 1 maintainer
chromVAR 1.26.0
Chromatin Variation Across Regions3 versions - Latest release: 1 day ago - 1 dependent package - 85.1 thousand downloads total - 1 maintainer
Top 2.9% on bioconductor.org
3 versions - Latest release: 1 day ago - 8 dependent packages - 144 thousand downloads total - 1 maintainer
openCyto 2.16.0
Hierarchical Gating Pipeline for flow cytometry data3 versions - Latest release: 1 day ago - 8 dependent packages - 144 thousand downloads total - 1 maintainer
Top 3.0% on bioconductor.org
3 versions - Latest release: 1 day ago - 2 dependent packages - 217 thousand downloads total - 9 stars on GitHub - 1 maintainer
ChemmineOB 1.42.0
R interface to a subset of OpenBabel functionalities3 versions - Latest release: 1 day ago - 2 dependent packages - 217 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
3 versions - Latest release: 9 days ago - 8 dependent packages - 224 thousand downloads total - 417 stars on GitHub - 1 maintainer
maftools 2.20.0 💰
Summarize, Analyze and Visualize MAF Files3 versions - Latest release: 9 days ago - 8 dependent packages - 224 thousand downloads total - 417 stars on GitHub - 1 maintainer
Top 4.8% on bioconductor.org
3 versions - Latest release: 1 day ago - 1 dependent package - 57.8 thousand downloads total - 1 maintainer
mygene 1.40.0
Access MyGene.Info_ services3 versions - Latest release: 1 day ago - 1 dependent package - 57.8 thousand downloads total - 1 maintainer
escheR 1.3.2
Unified multi-dimensional visualizations with Gestalt principles3 versions - Latest release: 1 day ago - 1.93 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 2.3% on bioconductor.org
6 versions - Latest release: 1 day ago - 13 dependent packages - 263 thousand downloads total - 2 maintainers
flowWorkspace 4.16.0
Infrastructure for representing and interacting with gated and ungated cytometry data sets.6 versions - Latest release: 1 day ago - 13 dependent packages - 263 thousand downloads total - 2 maintainers
iSEEhex 1.6.0
iSEE extension for summarising data points in hexagonal bins3 versions - Latest release: 1 day ago - 1 dependent package - 3.36 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 7.0% on bioconductor.org
3 versions - Latest release: 1 day ago - 19 dependent packages - 979 thousand downloads total - 7 stars on GitHub - 1 maintainer
ProtGenerics 1.36.0
Generic infrastructure for Bioconductor mass spectrometry packages3 versions - Latest release: 1 day ago - 19 dependent packages - 979 thousand downloads total - 7 stars on GitHub - 1 maintainer
Top 4.7% on bioconductor.org
4 versions - Latest release: 1 day ago - 8 dependent packages - 64.1 thousand downloads total - 1 maintainer
MSstats 4.12.0
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experi...4 versions - Latest release: 1 day ago - 8 dependent packages - 64.1 thousand downloads total - 1 maintainer
Top 5.6% on bioconductor.org
3 versions - Latest release: 1 day ago - 42.3 thousand downloads total - 1 maintainer
RDRToolbox 1.54.0
A package for nonlinear dimension reduction with Isomap and LLE.3 versions - Latest release: 1 day ago - 42.3 thousand downloads total - 1 maintainer
Top 7.5% on bioconductor.org
5 versions - Latest release: 1 day ago - 2 dependent packages - 32.5 thousand downloads total - 133 stars on GitHub - 1 maintainer
celda 1.20.0
CEllular Latent Dirichlet Allocation5 versions - Latest release: 1 day ago - 2 dependent packages - 32.5 thousand downloads total - 133 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
3 versions - Latest release: 1 day ago - 5 dependent packages - 64 thousand downloads total - 1 maintainer
hopach 2.64.0
Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)3 versions - Latest release: 1 day ago - 5 dependent packages - 64 thousand downloads total - 1 maintainer
Top 6.0% on bioconductor.org
3 versions - Latest release: 1 day ago - 3 dependent packages - 54.7 thousand downloads total - 1 maintainer
cn.mops 1.50.0
cn.mops - Mixture of Poissons for CNV detection in NGS data3 versions - Latest release: 1 day ago - 3 dependent packages - 54.7 thousand downloads total - 1 maintainer
fishpond 2.10.0
Fishpond: downstream methods and tools for expression data3 versions - Latest release: 1 day ago - 1 dependent package - 27.1 thousand downloads total - 21 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
3 versions - Latest release: 1 day ago - 48.6 thousand downloads total - 1 maintainer
MEDIPS 1.56.0
DNA IP-seq data analysis3 versions - Latest release: 1 day ago - 48.6 thousand downloads total - 1 maintainer
Top 3.8% on bioconductor.org
3 versions - Latest release: 1 day ago - 5 dependent packages - 98 thousand downloads total - 1 maintainer
IHW 1.32.0
Independent Hypothesis Weighting3 versions - Latest release: 1 day ago - 5 dependent packages - 98 thousand downloads total - 1 maintainer
martini 1.24.0
GWAS Incorporating Networks3 versions - Latest release: 1 day ago - 7.58 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
2 versions - Latest release: 6 months ago - 1 dependent package - 53 thousand downloads total - 1 maintainer
easyRNASeq 2.38.0
Count summarization and normalization for RNA-Seq data2 versions - Latest release: 6 months ago - 1 dependent package - 53 thousand downloads total - 1 maintainer
Top 2.6% on bioconductor.org
3 versions - Latest release: 1 day ago - 7 dependent packages - 314 thousand downloads total - 1 maintainer
ConsensusClusterPlus 1.68.0
ConsensusClusterPlus3 versions - Latest release: 1 day ago - 7 dependent packages - 314 thousand downloads total - 1 maintainer
Top 4.2% on bioconductor.org
3 versions - Latest release: 1 day ago - 6 dependent packages - 85.6 thousand downloads total - 1 maintainer
EBSeq 2.2.0
An R package for gene and isoform differential expression analysis of RNA-seq data3 versions - Latest release: 1 day ago - 6 dependent packages - 85.6 thousand downloads total - 1 maintainer
mitch 1.16.0
Multi-Contrast Gene Set Enrichment Analysis3 versions - Latest release: 8 days ago - 5.04 thousand downloads total - 14 stars on GitHub - 1 maintainer
bettr 1.0.0
A Better Way To Explore What Is Best1 version - Latest release: 9 days ago - 230 downloads total - 3 stars on GitHub - 1 maintainer
mastR 1.4.0
Markers Automated Screening Tool in R4 versions - Latest release: 1 day ago - 1.96 thousand downloads total - 4 stars on GitHub - 1 maintainer
smartid 1.0.0
Scoring and Marker Selection Method Based on Modified TF-IDF1 version - Latest release: 9 days ago - 185 downloads total - 0 stars on GitHub - 1 maintainer
Top 5.7% on bioconductor.org
3 versions - Latest release: 1 day ago - 2 dependent packages - 60.6 thousand downloads total - 1 maintainer
GreyListChIP 1.36.0
Grey Lists -- Mask Artefact Regions Based on ChIP Inputs3 versions - Latest release: 1 day ago - 2 dependent packages - 60.6 thousand downloads total - 1 maintainer
Top 3.9% on bioconductor.org
3 versions - Latest release: 1 day ago - 50 dependent packages - 2.16 million downloads total - 14 stars on GitHub - 1 maintainer
preprocessCore 1.66.0
A collection of pre-processing functions3 versions - Latest release: 1 day ago - 50 dependent packages - 2.16 million downloads total - 14 stars on GitHub - 1 maintainer
Top 3.0% on bioconductor.org
4 versions - Latest release: 1 day ago - 3 dependent packages - 208 thousand downloads total - 1 maintainer
cytolib 2.16.0
C++ infrastructure for representing and interacting with the gated cytometry data4 versions - Latest release: 1 day ago - 3 dependent packages - 208 thousand downloads total - 1 maintainer
Top 3.4% on bioconductor.org
3 versions - Latest release: 1 day ago - 3 dependent packages - 128 thousand downloads total - 1 maintainer
FlowSOM 2.12.0
Using self-organizing maps for visualization and interpretation of cytometry data3 versions - Latest release: 1 day ago - 3 dependent packages - 128 thousand downloads total - 1 maintainer
Top 3.6% on bioconductor.org
3 versions - Latest release: 1 day ago - 1 dependent package - 198 thousand downloads total - 3 stars on GitHub - 1 maintainer
CNEr 1.40.0
CNE Detection and Visualization3 versions - Latest release: 1 day ago - 1 dependent package - 198 thousand downloads total - 3 stars on GitHub - 1 maintainer
microbiomeMarker 1.10.0
microbiome biomarker analysis toolkit4 versions - Latest release: 1 day ago - 13.5 thousand downloads total - 160 stars on GitHub - 1 maintainer