Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
Top 7.6% on conda-forge.org
Top 0.5% dependent packages on conda-forge.org
Top 9.0% forks on conda-forge.org
Top 0.5% dependent packages on conda-forge.org
Top 9.0% forks on conda-forge.org
conda-forge.org : napari
a fast n-dimensional image viewer in Python
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purl: pkg:conda/napari
Keywords: napari, numpy, python, visualization
License: BSD-3-Clause,MIT
Latest release: over 1 year ago
First release: about 4 years ago
Dependent packages: 151
Dependent repositories: 10
Stars: 1,639 on GitHub
Forks: 350 on GitHub
See more repository details: repos.ecosyste.ms
Funding links: https://github.com/sponsors/numfocus, http://numfocus.org/donate-to-napari
Last synced: 2 days ago
napari-cryofibsem-monitor 0.0.3
A plugin to monitor the creation of lamella using AutoTEM on a TFS Acquilos instrument2 versions - Latest release: over 1 year ago - 0 stars on GitHub
partseg 0.14.6
Tool for segmentation in bioimaging7 versions - Latest release: over 1 year ago - 1 dependent package - 25 stars on GitHub
napari-menu 0.4.17 💰
provides menu icons for napari3 versions - Latest release: over 1 year ago - 1,639 stars on GitHub
napari-assistant 0.4.1
19 versions - Latest release: over 1 year ago - 4 dependent packages - 16 stars on GitHubnapari-turing 0.3.2
2 versions - Latest release: over 1 year ago - 1 stars on GitHubnapari-skimage-regionprops 0.5.6
Feature extraction for labeled objects in images using regionprops from scikit-image16 versions - Latest release: over 1 year ago - 11 dependent packages - 30 stars on GitHub
blik 0.3.3
Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.3 versions - Latest release: over 1 year ago - 17 stars on GitHub
txm_sandbox 0.2.3
TXM_Sandbox is a GUI program based on Jupyter that integrates tomography reconstruction and 2D/3D...8 versions - Latest release: over 1 year ago - 4 stars on GitHub
partseg-smfish 0.1.2
PartSeg and napari plugin for smfish data3 versions - Latest release: over 1 year ago - 1 stars on GitHub
koopa-viz 0.0.1
1 version - Latest release: over 1 year ago - 0 stars on GitHubrecorder-napari 0.2.0
3D quantitative label-free imaging with phase and polarization4 versions - Latest release: over 1 year ago - 4 stars on GitHub
palmari 0.2.8
Napari plugin to process PALM recordings (Photoactivated localization microscopy)6 versions - Latest release: over 1 year ago - 4 stars on GitHub
napari-splineit 0.3.0
Util to visualize and manipulate spline curves in Napari4 versions - Latest release: over 1 year ago - 4 stars on GitHub
napari-threedee 0.0.1
1 version - Latest release: over 1 year agodevbio-napari 0.8.0
16 versions - Latest release: over 1 year ago - 18 stars on GitHubnapari-allencell-annotator 1.0.7
4 versions - Latest release: over 1 year ago - 0 stars on GitHubnapari-yolov5 0.2.13
2 versions - Latest release: over 1 year ago - 4 stars on GitHubnapari-layer-table 0.0.10
3 versions - Latest release: over 1 year ago - 5 stars on GitHubnapari-allencell-segmenter 2.1.3
A plugin that enables image segmentation provided by Allen Institute for Cell Science3 versions - Latest release: over 1 year ago - 16 stars on GitHub
napari-j 0.2.4
Connect Napari with FIJI/ImageJ3 versions - Latest release: over 1 year ago - 3 stars on GitHub
napari-animation 0.0.3
napari-animation is a plugin for making animations in napari.2 versions - Latest release: over 1 year ago - 1 dependent package - 54 stars on GitHub
cellfinder-napari 0.0.20
Efficient cell detection in large images using cellfinder (https://brainglobe.info/cellfinder) in...3 versions - Latest release: over 1 year ago - 16 stars on GitHub
napari-ism 0.1.1
A Napari Plugin for Analysing and Simulating Image Scanning Microscopy Datasets2 versions - Latest release: over 1 year ago - 1 stars on GitHub
napari-timeseries-opener-plugin 0.1.8
Simple plugin that opens separate .tif files as a 3-dimensional layer.3 versions - Latest release: over 1 year ago - 1 stars on GitHub
napari-czann-segment 0.0.16
Semantic Segmention and Image2Image using DeepLearning ONNX models packaged as *.czann files.3 versions - Latest release: over 1 year ago - 7 stars on GitHub
napari-bio-sample-data 0.0.4
1 version - Latest release: over 1 year ago - 4 stars on GitHubnapari-pyclesperanto-assistant 0.21.0
GPU-accelerated general purpose image processing and image analysis in napari9 versions - Latest release: over 1 year ago - 2 dependent packages - 26 stars on GitHub
napari-deeplabcut 0.0.7 💰
a napari plugin for labeling and refining keypoint data within DeepLabCut projects6 versions - Latest release: over 1 year ago - 43 stars on GitHub
morphometrics 0.0.6
2 versions - Latest release: over 1 year ago - 17 stars on GitHubvollseg 5.8.4
Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio ...15 versions - Latest release: over 1 year ago - 1 dependent package - 18 stars on GitHub
napari-script-editor 0.2.9
A python script editor plugin for napari3 versions - Latest release: over 1 year ago - 9 stars on GitHub
napari-workflows 0.2.6
10 versions - Latest release: over 1 year ago - 8 dependent packages - 11 stars on GitHubnapari-plot-profile 0.2.2
2 versions - Latest release: over 1 year ago - 1 dependent package - 13 stars on GitHubvollseg-napari 2.3.7 removed
2 versions - Latest release: over 1 year agonapari-brightness-contrast 0.1.8
3 versions - Latest release: over 1 year ago - 1 dependent package - 10 stars on GitHubnapari-simpleitk-image-processing 0.4.4
11 versions - Latest release: over 1 year ago - 2 dependent packages - 13 stars on GitHubnapari-arboretum 0.1.1
Track and lineage visualization with btrack and Napari :evergreen_tree:3 versions - Latest release: over 1 year ago - 39 stars on GitHub
misic-napari 0.2.2
segmentation of rod-shaped bacteria2 versions - Latest release: over 1 year ago - 12 stars on GitHub
napari-nd2-folder-viewer 0.0.3
Look through separate nd2 files in one viewer.2 versions - Latest release: over 1 year ago - 0 stars on GitHub
napari-generic-simulator 0.0.18
4 versions - Latest release: over 1 year ago - 1 stars on GitHubnapari-live-recording 0.2.1
Recording with napari!2 versions - Latest release: over 1 year ago - 17 stars on GitHub
napari-segment-blobs-and-things-with-membranes 0.3.3
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy im...12 versions - Latest release: over 1 year ago - 1 dependent package - 17 stars on GitHub
napari-stl-exporter 0.0.11
Napari plugin to export stl files4 versions - Latest release: over 1 year ago - 8 stars on GitHub
avidaq 0.0.5
2 versions - Latest release: over 1 year agonapari-tools-menu 0.1.17
6 versions - Latest release: over 1 year ago - 28 dependent packages - 7 stars on GitHubbtrack 0.4.6
Bayesian multi-object tracking4 versions - Latest release: over 1 year ago - 1 dependent package - 224 stars on GitHub
napari-cellseg3d 0.0.1rc4
a napari plug-in for direct 3D cell segmentation on cleared tissue -- taking you through training...3 versions - Latest release: over 1 year ago - 26 stars on GitHub
napari-time-series-plotter 0.0.4 removed
A napari Plugin for visualisaton of pixel values over time (t + 2D, t+ nD) as graphs.3 versions - Latest release: over 1 year ago - 9 stars on GitHub
napari-aicsimageio 0.7.2
Multiple file format reading directly into napari using pure Python4 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 30 stars on GitHub
napari-clusters-plotter 0.5.2
A napari plugin for clustering objects according to their properties.6 versions - Latest release: over 1 year ago - 2 dependent packages - 60 stars on GitHub
vessel-express-napari 0.0.8
1 version - Latest release: over 1 year ago - 1 stars on GitHubnapari-pdr-reader 0.0.1 💰
Napari Plugin for PDS data using the PDR library1 version - Latest release: over 1 year ago - 2 stars on GitHub
napari-trait2d 0.1.4
A napari plugin for TRAIT2D, a software for quantitative analysis of single particle diffusion data2 versions - Latest release: over 1 year ago - 0 stars on GitHub
napari-spatialdata 0.1.0
Interactive visualization of spatial omics data1 version - Latest release: over 1 year ago - 21 stars on GitHub
napari-omaas 0.1.0
A napari plugin to acquire and analyze optical mapping data1 version - Latest release: over 1 year ago - 1 stars on GitHub
napari-stracking 0.1.9
Napari plugin for particles tracking1 version - Latest release: over 1 year ago - 5 stars on GitHub
napari-philow 0.0.1
1 version - Latest release: over 1 year ago - 20 stars on GitHubnapari-sift-registration 0.1.2
Napari plugin using SIFT and RANSAC (from scikit-image) to register 2D images1 version - Latest release: over 1 year ago - 1 stars on GitHub
napari-sc3d-viewer 0.1.0
A plugin to visualise 3D spatial single cell omics1 version - Latest release: over 1 year ago - 14 stars on GitHub
napari-help 0.1.0
1 version - Latest release: over 1 year ago - 1 stars on GitHubnapari-vesicles-segmentation 0.0.1
A simple plugin to detect vesicles in cells images.1 version - Latest release: over 1 year ago - 4 stars on GitHub
napari-sim-processor 0.0.9
Napari plugin for the reconstruction of Structured Illumination microscopy (SIM) data2 versions - Latest release: almost 2 years ago - 6 stars on GitHub
aicssegmentation 0.5.2
Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow3 versions - Latest release: almost 2 years ago - 3 dependent packages - 18 stars on GitHub
napari-roi 0.1.7
Select regions of interest (ROIs) using napari7 versions - Latest release: almost 2 years ago - 1 dependent package - 1 stars on GitHub
napari-filaments 0.2.1
A napari plugin for filament analysis2 versions - Latest release: almost 2 years ago - 4 stars on GitHub
brainreg-segment 0.2.16
Segmentation of 3D shapes in a common anatomical space2 versions - Latest release: almost 2 years ago - 19 stars on GitHub
napari-annotatorj 0.0.7
The napari adaptation of the ImageJ/Fiji plugin AnnotatorJ for easy image annotation.2 versions - Latest release: almost 2 years ago - 8 stars on GitHub
napari-pystackreg 0.1.1
1 version - Latest release: almost 2 years ago - 1 dependent package - 3 stars on GitHubnapari-nd-annotator 0.0.7
2 versions - Latest release: almost 2 years ago - 19 stars on GitHubnapari-annotator 0.0.1
A lightweight plugin extending label layer control.1 version - Latest release: almost 2 years ago - 3 stars on GitHub
napari-manual-transforms 0.0.3
1 version - Latest release: almost 2 years ago - 4 stars on GitHubnapari-bioimageio 0.1.3
1 version - Latest release: almost 2 years ago - 3 stars on GitHubarcos-gui 0.0.6
napari-plugin to analyse collective signalling events2 versions - Latest release: almost 2 years ago - 5 stars on GitHub
napari-psf-analysis 0.1.2
1 version - Latest release: almost 2 years ago - 4 stars on GitHubnapari-psf-simulator 0.1.5
widget for PSF simulation with aberrations1 version - Latest release: almost 2 years ago - 16 stars on GitHub
napari-labeling 0.1.2
1 version - Latest release: almost 2 years ago - 5 stars on GitHubnapari-blossom 0.0.1
1 version - Latest release: almost 2 years ago - 2 stars on GitHubnapari-picasso 0.3.0
Development of PICASSO plugin for napari1 version - Latest release: almost 2 years ago - 6 stars on GitHub
napari-ome-zarr 0.5.2
A napari plugin for zarr backed OME-NGFF images5 versions - Latest release: almost 2 years ago - 2 dependent packages - 1 dependent repositories - 13 stars on GitHub
napari-kics 0.0.3rc6
A plugin to estimate chromosome sizes from karyotype images.1 version - Latest release: almost 2 years ago - 5 stars on GitHub
napari-bigwarp 0.0.1
1 version - Latest release: almost 2 years ago - 2 stars on GitHubstardist-napari 2022.7.5
StarDist plugin for napari2 versions - Latest release: almost 2 years ago - 22 stars on GitHub
napari-ip-workflow 0.0.3
Basic pre-processing/segmentation/measurement workflow for napari.1 version - Latest release: almost 2 years ago - 0 stars on GitHub
napari-pram 0.1.3
1 version - Latest release: almost 2 years agonapari-roi-registration 0.1.2
2 versions - Latest release: almost 2 years ago - 4 stars on GitHubnapari-labels-overlap 0.0.3
napari-labels-overlap plugin2 versions - Latest release: almost 2 years ago - 1 stars on GitHub
napari-dexp 0.0.7
2 versions - Latest release: almost 2 years ago - 0 stars on GitHubnapari-feature-classifier 0.0.1
1 version - Latest release: almost 2 years ago - 14 stars on GitHubnapari-power-spectrum 0.0.6
1 version - Latest release: almost 2 years ago - 0 stars on GitHubyt-napari 0.0.1
A napari plugin for reading data from yt1 version - Latest release: almost 2 years ago - 4 stars on GitHub
beetlesafari 0.3.2
1 version - Latest release: almost 2 years ago - 3 stars on GitHubnapari-blob-detection 0.0.2
A napari plugin for detecting blobs in images as points1 version - Latest release: almost 2 years ago - 1 dependent package - 2 stars on GitHub
napari-matplotlib 0.2.1 💰
Linking napari layers with Matplotlib plots1 version - Latest release: almost 2 years ago - 2 dependent packages - 29 stars on GitHub
cellpose-napari 0.1.5
napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool2 versions - Latest release: almost 2 years ago - 1 dependent package - 33 stars on GitHub
napari-czifile2 0.2.7
Carl Zeiss Image (.czi) file support for napari3 versions - Latest release: almost 2 years ago - 1 dependent package - 4 stars on GitHub
napari-imc 0.6.5
Imaging Mass Cytometry (IMC) file type support for napari3 versions - Latest release: almost 2 years ago - 6 stars on GitHub
napari-micromanager 0.0.1rc7
GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets2 versions - Latest release: almost 2 years ago - 46 stars on GitHub
napari-animated-gif-io 0.1.2
Open and save 3D image stacks as animated gifs in napari2 versions - Latest release: about 2 years ago - 1 stars on GitHub
napari-svg 0.1.6
An io plugin for reading and writing svg files with napari5 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 1 stars on GitHub