Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

Top 9.7% on conda-forge.org
Top 0.8% dependent packages on conda-forge.org
Top 2.2% dependent repos on conda-forge.org

conda-forge.org : tifffile

Read and write TIFF files. Forked from https://pypi.org/project/tifffile

Registry - Source - JSON
purl: pkg:conda/tifffile
Keywords: format-reader, image, imagej, life-sciences-image, numpy, ome-tiff, python, tiff, whole-slide-imaging, zarr
License: BSD-3-Clause
Latest release: over 1 year ago
First release: over 4 years ago
Dependent packages: 92
Dependent repositories: 226
Stars: 369 on GitHub
Forks: 139 on GitHub
See more repository details: repos.ecosyste.ms
Last synced: 11 days ago

Top 6.5% on anaconda.org
scikit-image 0.22.0
scikit-image is a collection of algorithms for image processing. It is available free of charge a...
15 versions - Latest release: 4 months ago - 10 dependent packages - 1,441 dependent repositories - 5,313 stars on GitHub
dask-image 2023.8.1 💰
Distributed image processing
5 versions - Latest release: 6 months ago - 13 dependent repositories - 163 stars on GitHub
pims 0.6.1
Python Image Sequence: Load video and sequential images in many formats with a simple, consistent...
3 versions - Latest release: 6 months ago - 2 dependent packages - 10 dependent repositories - 243 stars on GitHub
aicsimageio 4.9.3
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
17 versions - Latest release: over 1 year ago - 7 dependent packages - 1 dependent repositories - 142 stars on GitHub
caiman 1.9.12
CaImAn implements a set of essential methods required in analysis pipelines for large scale calci...
30 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 510 stars on GitHub
napari-cryofibsem-monitor 0.0.3
A plugin to monitor the creation of lamella using AutoTEM on a TFS Acquilos instrument
2 versions - Latest release: over 1 year ago - 0 stars on GitHub
lumicks.pylake 0.13.2
Bluelake data analysis tools
25 versions - Latest release: over 1 year ago - 13 stars on GitHub
oct-to-tiff 0.3.0
A command line tool for converting optical coherence tomography angiography (OCTA) data.
2 versions - Latest release: over 1 year ago - 2 stars on GitHub
partseg 0.14.6
Tool for segmentation in bioimaging
7 versions - Latest release: over 1 year ago - 1 dependent package - 25 stars on GitHub
Top 7.6% on conda-forge.org
napari 0.4.17 💰
a fast n-dimensional image viewer in Python
26 versions - Latest release: over 1 year ago - 151 dependent packages - 10 dependent repositories - 1,639 stars on GitHub
tiffslide 1.10.1
TiffSlide - cloud native openslide-python replacement based on tifffile
17 versions - Latest release: over 1 year ago - 3 dependent packages - 1 dependent repositories - 49 stars on GitHub
pyotf 0.0.3
python functions for simulating optical transfer functions
2 versions - Latest release: over 1 year ago - 1 dependent package - 50 stars on GitHub
pycudadecon 0.4.0
This package provides a python wrapper and convenience functions for cudadecon, a CUDA/C++ implem...
3 versions - Latest release: over 1 year ago - 51 stars on GitHub
n2v 0.3.2
This is the implementation of Noise2Void training.
1 version - Latest release: over 1 year ago - 346 stars on GitHub
bioimageio.core 0.5.7
Python libraries for loading, running and packaging bioimage.io models
27 versions - Latest release: over 1 year ago - 2 dependent packages - 1 dependent repositories - 8 stars on GitHub
crystalmapping 0.2.0
The software is used to map the crystal morphology, crystallinity and crystal quality in boules t...
2 versions - Latest release: over 1 year ago - 1 stars on GitHub
scikit-ued 2.1.13 💰
Collection of algorithms and functions for ultrafast electron diffraction.
23 versions - Latest release: over 1 year ago - 1 dependent package - 103 stars on GitHub
txm_sandbox 0.2.3
TXM_Sandbox is a GUI program based on Jupyter that integrates tomography reconstruction and 2D/3D...
8 versions - Latest release: over 1 year ago - 4 stars on GitHub
hyperspy-base 1.7.3
Multidimensional data analysis
15 versions - Latest release: over 1 year ago - 9 dependent packages - 8 dependent repositories - 422 stars on GitHub
h5grove 1.2.1
h5grove is a Python package that provides utilities to design backends serving HDF5 file content:...
3 versions - Latest release: over 1 year ago - 1 dependent package - 4 stars on GitHub
koopa-viz 0.0.1
1 version - Latest release: over 1 year ago - 0 stars on GitHub
recorder-napari 0.2.0
3D quantitative label-free imaging with phase and polarization
4 versions - Latest release: over 1 year ago - 4 stars on GitHub
palmari 0.2.8
Napari plugin to process PALM recordings (Photoactivated localization microscopy)
6 versions - Latest release: over 1 year ago - 4 stars on GitHub
hesperos 0.1.33
Napari plugin
8 versions - Latest release: over 1 year ago - 3 stars on GitHub
lfdfiles 2022.9.29
Laboratory for Fluorescence Dynamics (LFD) file formats. Forked from https://pypi.org/project/lfd...
4 versions - Latest release: over 1 year ago - 2 stars on GitHub
cellfinder-napari 0.0.20
Efficient cell detection in large images using cellfinder (https://brainglobe.info/cellfinder) in...
3 versions - Latest release: over 1 year ago - 16 stars on GitHub
oiffile 2022.9.29
Read Olympus(r) image files (OIF and OIB). Forked from https://pypi.org/project/oiffile
3 versions - Latest release: over 1 year ago - 2 dependent packages - 7 stars on GitHub
napari-timeseries-opener-plugin 0.1.8
Simple plugin that opens separate .tif files as a 3-dimensional layer.
3 versions - Latest release: over 1 year ago - 1 stars on GitHub
tiatoolbox 1.3.0
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
5 versions - Latest release: over 1 year ago - 172 stars on GitHub
pyxrf 1.0.20
Fluorescence fitting GUI.
40 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 24 stars on GitHub
tiled-formats 0.1.0a75
This is an experimental prototype.
9 versions - Latest release: over 1 year ago - 1 dependent package - 31 stars on GitHub
vollseg 5.8.4
Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio ...
15 versions - Latest release: over 1 year ago - 1 dependent package - 18 stars on GitHub
vollseg-napari 2.3.7 removed
2 versions - Latest release: over 1 year ago
panda3d 1.10.12 💰
Panda3D is a game engine, a framework for 3D rendering and game development for Python and C++ pr...
6 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 3,765 stars on GitHub
area-detector-handlers 0.0.10
3 versions - Latest release: over 1 year ago - 4 dependent packages - 1 dependent repositories - 0 stars on GitHub
tomopy 1.12.2
TomoPy is an open-source Python package for tomographic data processing and image reconstruction.
21 versions - Latest release: over 1 year ago - 6 dependent packages - 7 dependent repositories - 256 stars on GitHub
xpdacq 1.1.2
Acquisition packages for XPD-28 beamline at BNL
15 versions - Latest release: over 1 year ago - 2 stars on GitHub
pado 0.11.0
PAthological Data Obsession - cloud native digital pathology datasets
2 versions - Latest release: over 1 year ago - 8 stars on GitHub
napari-generic-simulator 0.0.18
4 versions - Latest release: over 1 year ago - 1 stars on GitHub
waveorder 1.0.0rc0
A generalist library of wave optical models and inverse algorithms for label-free imaging of dens...
2 versions - Latest release: over 1 year ago - 1 dependent package - 7 stars on GitHub
descarteslabs 1.11.0
Descartes Labs Python Client Library
40 versions - Latest release: almost 2 years ago - 1 dependent repositories - 153 stars on GitHub
napari-cellseg3d 0.0.1rc4
a napari plug-in for direct 3D cell segmentation on cleared tissue -- taking you through training...
3 versions - Latest release: almost 2 years ago - 26 stars on GitHub
vessel-express-napari 0.0.8
1 version - Latest release: almost 2 years ago - 1 stars on GitHub
imaxt-image 0.17.4
1 version - Latest release: almost 2 years ago - 0 stars on GitHub
xtiff 0.7.8
A tiny Python library for writing multi-channel TIFF stacks.
1 version - Latest release: almost 2 years ago - 1 dependent package - 23 stars on GitHub
dpcmaps 1.1.6
5 versions - Latest release: almost 2 years ago - 0 stars on GitHub
python-geotiff 0.2.7
Python-geotiff is a library that reads geotiff files without the need for GDAL, a program that wa...
3 versions - Latest release: almost 2 years ago - 1 dependent package - 146 stars on GitHub
imio 0.2.4
Loading and saving of image data.
5 versions - Latest release: almost 2 years ago - 2 dependent packages - 3 stars on GitHub
napari-annotatorj 0.0.7
The napari adaptation of the ImageJ/Fiji plugin AnnotatorJ for easy image annotation.
2 versions - Latest release: almost 2 years ago - 8 stars on GitHub
microfilm 0.2.1
Creating figures and animations for multi-channel images with a focus on microscopy.
3 versions - Latest release: almost 2 years ago - 1 dependent package - 40 stars on GitHub
dexp 2022.6.29.552
Dataset EXploration & Processing
4 versions - Latest release: almost 2 years ago - 1 dependent package - 27 stars on GitHub
ptychodus-core 0.2.2
Ptychodus is a ptychography analysis application.
2 versions - Latest release: almost 2 years ago - 1 dependent package - 5 stars on GitHub
Top 0.3% on conda-forge.org
scikit-image 0.19.3
scikit-image is a collection of algorithms for image processing. It is available free of charge a...
20 versions - Latest release: almost 2 years ago - 274 dependent packages - 1,441 dependent repositories
cellfinder-core 0.3.0
Standalone cellfinder cell detection algorithm
2 versions - Latest release: almost 2 years ago - 1 dependent package - 11 stars on GitHub
csbdeep 0.7.2
Image restoration for fluorescence microscopy
4 versions - Latest release: almost 2 years ago - 4 dependent packages - 1 dependent repositories - 220 stars on GitHub
napari-czifile2 0.2.7
Carl Zeiss Image (.czi) file support for napari
3 versions - Latest release: about 2 years ago - 1 dependent package - 4 stars on GitHub
openpatchminer 0.1.8
OpenSlide Patch Manager
4 versions - Latest release: about 2 years ago - 1 dependent package - 4 stars on GitHub
squidpy 1.2.2
Squidpy is a tool for the analysis and visualization of spatial molecular data. It builds on top ...
1 version - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 282 stars on GitHub
pims 0.6.1
Python Image Sequence: Load video and sequential images in many formats with a simple, consistent...
6 versions - Latest release: about 2 years ago - 20 dependent packages - 10 dependent repositories - 244 stars on GitHub
napari-imsmicrolink 0.1.7
napari plugin for IMS - Microscopy registration through laser ablation marks.
3 versions - Latest release: about 2 years ago - 5 stars on GitHub
cellpose 2.0.5
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
6 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 985 stars on GitHub
suitcase-tiff 0.4.0
2 versions - Latest release: about 2 years ago - 1 dependent package - 2 stars on GitHub
labeling 0.1.12
7 versions - Latest release: about 2 years ago - 2 dependent packages - 1 dependent repositories - 2 stars on GitHub
xmidas 0.1.2
MIDAS (Multimodal Image Data Analysis Software)
2 versions - Latest release: about 2 years ago - 0 stars on GitHub
bg-atlasapi 1.0.2
A lightweight python module to interact with atlases for systems neuroscience
2 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 68 stars on GitHub
torch_em 0.4.0
Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioim...
3 versions - Latest release: about 2 years ago - 1 dependent repositories - 28 stars on GitHub
ptvpy 0.10.2
A free and open-source command line tool and Python library for particle tracking velocimetry ena...
4 versions - Latest release: about 2 years ago - 1 stars on GitLab.com
dxchange 0.1.8
7 versions - Latest release: about 2 years ago - 2 dependent packages - 8 dependent repositories
spam 0.6.1.1
1 version - Latest release: about 2 years ago
brainglobe-napari-io 0.1.5
Read and write files from the BrainGlobe neuroanatomy suite
2 versions - Latest release: about 2 years ago - 2 dependent packages - 4 stars on GitHub
delta2 2.0.5
DeLTA can process movies of rod-shaped bacteria growing in 2D setups such as agarose pads, as wel...
8 versions - Latest release: about 2 years ago - 17 stars on GitLab.com
sentinelhub 3.4.4
Download and process satellite imagery in Python using Sentinel Hub services.
15 versions - Latest release: over 2 years ago - 2 dependent packages - 3 dependent repositories - 683 stars on GitHub
minian 1.2.1
MiniAn is an analysis pipeline and visualization tool inspired by both CaImAn and MIN1PIPE packag...
10 versions - Latest release: over 2 years ago - 72 stars on GitHub
pychx 4.1.2
chx_analysis_codes
5 versions - Latest release: over 2 years ago - 1 dependent repositories - 3 stars on GitHub
yapic-io 0.2.7
I/O data handling module for various image sources. Mainly to provide data interface for supervis...
1 version - Latest release: over 2 years ago - 1 dependent package - 1 stars on GitHub
workshop-demo 0.0.1
A demo napari plugin incorporating reader, writer and dock widget contributions using the new npe...
1 version - Latest release: over 2 years ago - 1 stars on GitHub
napari-ndtiffs 0.1.2
A napari plugin to load & deskew folders of lattice light sheet TIFFs
1 version - Latest release: over 2 years ago - 2 dependent packages - 11 stars on GitHub
msdnet 2.0.0
Python implementation of the Mixed-Scale Dense Convolutional Neural Network.
2 versions - Latest release: over 2 years ago - 32 stars on GitHub
databroker 1.2.5
A unified interface to the various data sources at NSLS-II.
27 versions - Latest release: over 2 years ago - 25 dependent packages - 1 dependent repositories - 28 stars on GitHub
txrm2tiff 2.0.2
Converts txrm/xrm files to OME tif/tiff files. txrm2tiff was created for users of beamline B24 of...
17 versions - Latest release: over 2 years ago - 0 stars on GitHub
stitchm 1.5.0
StitchM stitches together mosaic images taken in Cockpit (Micron) into a universally readable for...
12 versions - Latest release: over 2 years ago - 0 stars on GitHub
make_arq 0.1 💰
A command-line tool for generating Sony A7RIII Pixel-Shift ARQ files
1 version - Latest release: over 2 years ago - 0 stars on GitHub
radiosphere 1.0.1
1 version - Latest release: over 2 years ago
pycudasirecon 0.1.0
This package provides a python wrapper and convenience functions for cudasirecon, a CUDA-accelera...
1 version - Latest release: almost 3 years ago - 4 stars on GitHub
sdt-python 16.0.2
Python library for fluorescence microscopy data anlysis
13 versions - Latest release: about 3 years ago - 27 stars on GitHub
tifffolder 0.1.8
Parse filenames and lazily read subset of data from a folder of images using numpy slicing syntax...
3 versions - Latest release: over 3 years ago - 9 stars on GitHub
czifile 2019.7.2
Czifile is a Python library to read Carl Zeiss Image (CZI) files, the native file format of the Z...
1 version - Latest release: about 4 years ago - 4 dependent packages - 1 dependent repositories
slicedimage 4.1.1
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 7 stars on GitHub
thunder-python 1.4.2
scalable analysis of images and time series
1 version - Latest release: over 4 years ago - 1 dependent package - 816 stars on GitHub
colicoords 0.1.5
Single-cell fluorescence microscopy data analysis
3 versions - Latest release: over 4 years ago - 21 stars on GitHub
_anaconda_depends 5.3.1
The same dependencies as the anaconda metapackage, without pinned versions. _anaconda_depends is ...
23 versions - Latest release: almost 5 years ago - 1 dependent package - 41 dependent repositories
anaconda 5.3.1
Anaconda is a Python distribution which includes over 400 Python packages for science, math, engi...
25 versions - Latest release: over 5 years ago - 206 dependent repositories