Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
cran.r-project.org "bioinformatics" keyword
vcfppR 0.4.5
Rapid Manipulation of the Variant Call Format (VCF)5 versions - Latest release: 28 days ago - 340 downloads last month - 8 stars on GitHub - 1 maintainer
TreeSearch 1.5.0
Phylogenetic Analysis with Discrete Character Data24 versions - Latest release: about 1 month ago - 3 dependent packages - 4 dependent repositories - 659 downloads last month - 5 stars on GitHub - 1 maintainer
TidyMultiqc 1.0.3
Converts 'MultiQC' Reports into Tidy Data Frames4 versions - Latest release: over 1 year ago - 232 downloads last month - 11 stars on GitHub - 1 maintainer
biocompute 1.1.1
Create and Manipulate BioCompute Objects5 versions - Latest release: about 2 years ago - 255 downloads last month - 3 stars on GitHub - 1 maintainer
Top 7.9% on cran.r-project.org
43 versions - Latest release: 6 months ago - 3 dependent packages - 6 dependent repositories - 951 downloads last month - 286 stars on GitHub - 1 maintainer
canvasXpress 1.46.9
Visualization Package for CanvasXpress in R43 versions - Latest release: 6 months ago - 3 dependent packages - 6 dependent repositories - 951 downloads last month - 286 stars on GitHub - 1 maintainer
glmmSeq 0.5.5
General Linear Mixed Models for Gene-Level Differential Expression6 versions - Latest release: over 1 year ago - 18 stars on GitHub - 1 maintainer
epigraphdb 0.2.3
Interface Package for the 'EpiGraphDB' Platform3 versions - Latest release: over 2 years ago - 1 dependent repositories - 439 downloads last month - 24 stars on GitHub - 1 maintainer
Top 8.9% on cran.r-project.org
18 versions - Latest release: about 1 month ago - 1 dependent package - 17 dependent repositories - 8.95 thousand downloads last month - 290 stars on GitHub - 1 maintainer
Signac 1.13.0
Analysis of Single-Cell Chromatin Data18 versions - Latest release: about 1 month ago - 1 dependent package - 17 dependent repositories - 8.95 thousand downloads last month - 290 stars on GitHub - 1 maintainer
goat 1.0
Gene Set Analysis Using the Gene Set Ordinal Association Test1 version - Latest release: 6 days ago - 9 downloads last month - 4 stars on GitHub - 1 maintainer
rbioapi 0.8.1
User-Friendly R Interface to Biologic Web Services' API8 versions - Latest release: about 1 month ago - 1 dependent repositories - 643 downloads last month - 17 stars on GitHub - 1 maintainer
REPTILE 1.0
Regulatory DNA Element Prediction1 version - Latest release: almost 8 years ago - 133 downloads last month - 28 stars on GitHub - 1 maintainer
baseq 0.1.4
Basic Sequence Processing Tool for Biological Data4 versions - Latest release: about 1 year ago - 303 downloads last month - 0 stars on GitHub - 1 maintainer
OmicNavigator 1.13.13
Open-Source Software for 'Omic' Data Analysis and Visualization6 versions - Latest release: 8 months ago - 322 downloads last month - 21 stars on GitHub - 1 maintainer
scINSIGHT 0.1.4
Interpretation of Heterogeneous Single-Cell Gene Expression Data5 versions - Latest release: almost 2 years ago - 164 downloads last month - 19 stars on GitHub - 1 maintainer
homologene 1.1.68
Quick Access to Homologene and Gene Annotation Updates2 versions - Latest release: over 6 years ago - 3 dependent repositories - 547 downloads last month - 39 stars on GitHub - 1 maintainer
echo.find 4.0.1
Finding Rhythms Using Extended Circadian Harmonic Oscillators (ECHO)9 versions - Latest release: almost 4 years ago - 215 downloads last month - 11 stars on GitHub - 1 maintainer
BioCircos 0.3.4
Interactive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js'3 versions - Latest release: about 5 years ago - 2 dependent repositories - 502 downloads last month - 36 stars on GitHub - 1 maintainer
liger 2.0.1
Lightweight Iterative Geneset Enrichment4 versions - Latest release: over 3 years ago - 4 dependent repositories - 372 downloads last month - 55 stars on GitHub - 1 maintainer
volcano3D 2.0.9
3D Volcano Plots and Polar Plots for Three-Class Data7 versions - Latest release: 12 months ago - 259 downloads last month - 31 stars on GitHub - 1 maintainer
kgp 1.1.1
1000 Genomes Project Metadata3 versions - Latest release: over 1 year ago - 187 downloads last month - 19 stars on GitHub - 1 maintainer
grex 1.9
Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data8 versions - Latest release: almost 5 years ago - 1 dependent repositories - 254 downloads last month - 8 stars on GitHub - 1 maintainer
tidysq 1.1.3
Tidy Processing and Analysis of Biological Sequences3 versions - Latest release: over 2 years ago - 203 downloads last month - 34 stars on GitHub - 1 maintainer
pepr 0.5.0
Reading Portable Encapsulated Projects3 versions - Latest release: 6 months ago - 5 dependent repositories - 287 downloads last month - 3 stars on GitHub - 1 maintainer
UCSCXenaTools 1.4.8
Download and Explore Datasets from UCSC Xena Data Hubs35 versions - Latest release: almost 2 years ago - 2 dependent packages - 6 dependent repositories - 847 downloads last month - 92 stars on GitHub - 1 maintainer
MetaComp 1.1.2
EDGE Taxonomy Assignments Visualization3 versions - Latest release: almost 6 years ago - 219 downloads last month - 3 stars on GitHub - 1 maintainer
slurmR 0.5-4
A Lightweight Wrapper for 'Slurm'6 versions - Latest release: 8 months ago - 2 dependent repositories - 320 downloads last month - 53 stars on GitHub - 1 maintainer
admixr 0.9.1
An Interface for Running 'ADMIXTOOLS' Analyses1 version - Latest release: almost 4 years ago - 1 dependent package - 1 dependent repositories - 324 downloads last month - 26 stars on GitHub - 1 maintainer
harrietr 0.2.3
Wrangle Phylogenetic Distance Matrices and Other Utilities2 versions - Latest release: over 6 years ago - 1 dependent repositories - 12 stars on GitHub - 1 maintainer
pagoo 0.3.17
Analyze Bacterial Pangenomes in R with 'Pagoo'5 versions - Latest release: over 1 year ago - 1 dependent repositories - 255 downloads last month - 23 stars on GitHub - 1 maintainer
cubar 0.5.0
Codon Usage Bias Analysis3 versions - Latest release: 4 months ago - 192 downloads last month - 5 stars on GitHub - 1 maintainer
CancerGram 1.0.0
Prediction of Anticancer Peptides1 version - Latest release: over 3 years ago - 224 downloads last month - 4 stars on GitHub - 1 maintainer
bodenmiller 0.1.1
Profiling of Peripheral Blood Mononuclear Cells using CyTOF2 versions - Latest release: about 3 years ago - 3 dependent packages - 4 dependent repositories - 192 downloads last month - 2 stars on GitHub - 1 maintainer
RDML 1.0
Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files10 versions - Latest release: almost 5 years ago - 3 dependent packages - 4 dependent repositories - 290 downloads last month - 20 stars on GitHub - 1 maintainer
freqpcr 0.4.0
Estimates Allele Frequency on qPCR DeltaDeltaCq from Bulk Samples1 version - Latest release: over 2 years ago - 174 downloads last month - 1 stars on GitHub - 1 maintainer
immunarch 0.9.1
Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires10 versions - Latest release: about 2 months ago - 1.26 thousand downloads last month - 282 stars on GitHub - 1 maintainer
ipADMIXTURE 0.1.0
Iterative Pruning Population Admixture Inference Framework1 version - Latest release: about 4 years ago - 140 downloads last month - 4 stars on GitHub - 1 maintainer
chatAI4R 0.2.10
Chat-Based Interactive Artificial Intelligence for R2 versions - Latest release: 8 months ago - 184 downloads last month - 2 stars on GitHub - 1 maintainer
Top 9.2% on cran.r-project.org
15 versions - Latest release: about 1 year ago - 3 dependent packages - 4 dependent repositories - 1.1 thousand downloads last month - 177 stars on GitHub - 1 maintainer
bigsnpr 1.12.2
Analysis of Massive SNP Arrays15 versions - Latest release: about 1 year ago - 3 dependent packages - 4 dependent repositories - 1.1 thousand downloads last month - 177 stars on GitHub - 1 maintainer
LPWC 1.0.0
Lag Penalized Weighted Correlation for Time Series Clustering5 versions - Latest release: over 4 years ago - 159 downloads last month - 20 stars on GitHub - 1 maintainer
SPUTNIK 1.4.2
Spatially Automatic Denoising for Imaging Mass Spectrometry Toolkit19 versions - Latest release: 20 days ago - 178 downloads last month - 4 stars on GitHub - 1 maintainer
Quartet 1.2.6
Comparison of Phylogenetic Trees Using Quartet and Split Measures10 versions - Latest release: 3 months ago - 3 dependent packages - 5 dependent repositories - 8 stars on GitHub - 1 maintainer
polyRAD 2.0.0
Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids9 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 315 downloads last month - 24 stars on GitHub - 1 maintainer
macrosyntR 0.3.3
Draw Ordered Oxford Grids and Chord Diagrams3 versions - Latest release: 6 months ago - 148 downloads last month - 10 stars on GitHub - 1 maintainer
shinyExprPortal 1.1.0
A Configurable 'shiny' Portal for Sharing Analysis of Molecular Expression Data3 versions - Latest release: 3 months ago - 238 downloads last month - 4 stars on GitHub - 1 maintainer
Top 10.0% on cran.r-project.org
23 versions - Latest release: 5 months ago - 5 dependent packages - 14 dependent repositories - 1.05 thousand downloads last month - 73 stars on GitHub - 1 maintainer
Peptides 2.4.6
Calculate Indices and Theoretical Physicochemical Properties of Protein Sequences23 versions - Latest release: 5 months ago - 5 dependent packages - 14 dependent repositories - 1.05 thousand downloads last month - 73 stars on GitHub - 1 maintainer
sigminer 2.3.0
Extract, Analyze and Visualize Mutational Signatures for Genomic Variations33 versions - Latest release: 5 months ago - 1 dependent repositories - 134 stars on GitHub - 1 maintainer
Canek 0.2.5
Batch Correction of Single Cell Transcriptome Data6 versions - Latest release: 5 months ago - 1 dependent repositories - 264 downloads last month - 4 stars on GitHub - 1 maintainer
flowr 0.9.11
Streamlining Design and Deployment of Complex Workflows7 versions - Latest release: about 3 years ago - 1 dependent repositories - 219 downloads last month - 83 stars on GitHub - 1 maintainer
singleCellHaystack 1.0.2
A Universal Differential Expression Prediction Tool for Single-Cell and Spatial Genomics Data5 versions - Latest release: 4 months ago - 1 dependent repositories - 300 downloads last month - 69 stars on GitHub - 1 maintainer
ClustAssess 0.3.0
Tools for Assessing Clustering3 versions - Latest release: over 2 years ago - 247 downloads last month - 18 stars on GitHub - 1 maintainer
TOmicsVis 2.0.0
Transcriptome Visualization Process Scheme3 versions - Latest release: 8 months ago - 223 downloads last month - 52 stars on GitHub - 1 maintainer
chromatographR 0.4.4 removed
Chromatographic Data Analysis Toolset3 versions - Latest release: over 1 year ago - 3 stars on GitHub
g3viz 1.1.5 removed
Interactively Visualize Genetic Mutation Data using a Lollipop-Diagram10 versions - Latest release: over 1 year ago - 1 dependent repositories - 288 downloads last month - 29 stars on GitHub - 1 maintainer
seqR 1.0.1 removed
Fast and Comprehensive K-Mer Counting Package2 versions - Latest release: over 2 years ago - 1 dependent repositories - 11 stars on GitHub
minval 0.8-2 removed
MINimal VALidation for Stoichiometric Reactions11 versions - Latest release: almost 2 years ago - 1 dependent package - 2 dependent repositories - 3 stars on GitHub - 1 maintainer
Related Keywords
r
19
cran
12
transcriptomics
7
genomics
6
r-package
6
rstats
6
gene-expression
4
single-cell
4
visualization
4
api-client
3
phylogenetics
3
omics
3
sequencing
2
reproducible-research
2
shiny
2
population-genetics
2
metadata
2
rpackage
2
rna-seq
2
machine-learning
2
genomics-visualization
2
protein-sequences
2
rcpp
2
clustering
2
research-tool
2
pcr
2
enrichment
2
workflow
2
bioinformatics-tool
2
k-mer
2
pipeline
2
comparison
1
maldi-msi
1
image-processing
1
mass-spectrometry-imaging
1
desi-msi
1
mass-spectrometry
1
time-series
1
maldi-tof-ms
1
tcr
1
phylogenetic-trees
1
quartet
1
quartet-distance
1
tree
1
dna-sequencing
1
genotype-likelihoods
1
genotyping-by-sequencing
1
hacktoberfest
1
rad-seq
1
rad-sequencing
1
snp-genotyping
1
genomic-visualizations
1
data-analysis
1
calculate-indices
1
stoichiometric-reactions
1
t-cell-receptor
1
single-cell-analysis
1
repertoire-analysis
1
rep-seq
1
immunology
1
immunoinformatics
1
immunoglobulin
1
immune-repertoire-data
1
immune-repertoire-analysis
1
immune-repertoire
1
ig-repertoire
1
ig
1
bcr-repertoire
1
bcr
1
b-cell-receptor
1
geneset-enrichment
1
statistical-methods
1
snp-data
1
population-structure-inference
1
polygenic-scores
1
parallel-computing
1
memory-mapped-file
1
big-data
1
image-generation
1
image
1
gpt
1
chatgpt
1
ai
1
population-structure
1
population-stratification
1
data-clustering-algorithm
1
admixture
1
tcr-repertoire
1
feature-extraction
1
feature-engineering
1
dna-processing
1
visualize-mutation-data
1
variants
1
lollipop-plot
1
reproducibility
1
open-science
1
open-data
1
metabolomics
1
hplv-uv
1
hplc-pda
1