Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

cran.r-project.org "genomics" keyword

Top 7.6% on cran.r-project.org
qqman 0.1.9
Q-Q and Manhattan Plots for GWAS Data
6 versions - Latest release: 9 months ago - 8 dependent packages - 13 dependent repositories - 5.36 thousand downloads last month - 147 stars on GitHub - 1 maintainer
Top 7.9% on cran.r-project.org
canvasXpress 1.46.9
Visualization Package for CanvasXpress in R
43 versions - Latest release: 6 months ago - 3 dependent packages - 6 dependent repositories - 951 downloads last month - 286 stars on GitHub - 1 maintainer
Top 7.5% on cran.r-project.org
msigdbr 7.5.1
MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
7 versions - Latest release: about 2 years ago - 13 dependent packages - 66 dependent repositories - 5.93 thousand downloads last month - 64 stars on GitHub - 1 maintainer
klic 1.0.4
Kernel Learning Integrative Clustering
2 versions - Latest release: almost 4 years ago - 200 downloads last month - 5 stars on GitHub - 1 maintainer
OmicNavigator 1.13.13
Open-Source Software for 'Omic' Data Analysis and Visualization
6 versions - Latest release: 8 months ago - 322 downloads last month - 21 stars on GitHub - 1 maintainer
coca 1.1.0
Cluster-of-Clusters Analysis
2 versions - Latest release: almost 4 years ago - 1 dependent package - 2 dependent repositories - 275 downloads last month - 4 stars on GitHub - 1 maintainer
kgp 1.1.1
1000 Genomes Project Metadata
3 versions - Latest release: over 1 year ago - 187 downloads last month - 19 stars on GitHub - 1 maintainer
graphsim 1.0.3
Simulate Expression Data from 'igraph' Networks
5 versions - Latest release: over 1 year ago - 1 dependent package - 2 dependent repositories - 494 downloads last month - 21 stars on GitHub - 1 maintainer
TopDom 0.10.1
An Efficient and Deterministic Method for Identifying Topological Domains in Genomes
1 version - Latest release: almost 3 years ago - 2 dependent packages - 1 dependent repositories - 199 downloads last month - 17 stars on GitHub - 1 maintainer
BGData 2.4.1
A Suite of Packages for Analysis of Big Genomic Data
7 versions - Latest release: about 1 year ago - 2 dependent packages - 3 dependent repositories - 407 downloads last month - 33 stars on GitHub - 1 maintainer
AlphaSimR 1.5.3
Breeding Program Simulations
22 versions - Latest release: 5 months ago - 2 dependent packages - 5 dependent repositories - 37 stars on GitHub - 1 maintainer
tidygenomics 0.1.2
Tidy Verbs for Dealing with Genomic Data Frames
3 versions - Latest release: over 4 years ago - 136 downloads last month - 101 stars on GitHub - 1 maintainer
symDMatrix 2.1.1
Partitioned Symmetric Matrices
6 versions - Latest release: almost 4 years ago - 1 dependent package - 1 dependent repositories - 272 downloads last month - 2 stars on GitHub - 1 maintainer
BEDMatrix 2.0.3
Extract Genotypes from a PLINK .bed File
12 versions - Latest release: almost 4 years ago - 9 dependent packages - 11 dependent repositories - 974 downloads last month - 15 stars on GitHub - 1 maintainer
Top 6.0% on cran.r-project.org
biomartr 1.0.7
Genomic Data Retrieval
21 versions - Latest release: 5 months ago - 3 dependent packages - 7 dependent repositories - 1.77 thousand downloads last month - 202 stars on GitHub - 1 maintainer
rCNV 1.2.0
Detect Copy Number Variants from SNPs Data
3 versions - Latest release: 9 months ago - 231 downloads last month - 5 stars on GitHub - 1 maintainer
Top 6.6% on cran.r-project.org
vcfR 1.15.0
Manipulate and Visualize VCF Data
16 versions - Latest release: 5 months ago - 25 dependent packages - 55 dependent repositories - 7.25 thousand downloads last month - 231 stars on GitHub - 1 maintainer
macrosyntR 0.3.3
Draw Ordered Oxford Grids and Chord Diagrams
3 versions - Latest release: 6 months ago - 148 downloads last month - 10 stars on GitHub - 1 maintainer
ClustAssess 0.3.0
Tools for Assessing Clustering
3 versions - Latest release: over 2 years ago - 247 downloads last month - 18 stars on GitHub - 1 maintainer
JBrowseR 0.10.2
An R Interface to the JBrowse 2 Genome Browser
8 versions - Latest release: 5 months ago - 1 dependent package - 2 dependent repositories - 363 downloads last month - 34 stars on GitHub - 1 maintainer
seqR 1.0.1 removed
Fast and Comprehensive K-Mer Counting Package
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 11 stars on GitHub
Related Keywords
r 12 cran 9 bioinformatics 6 genetics 6 r-package 3 r-pkg 3 clustering 3 visualization 3 population-genetics 2 rcpp 2 multi-omics 2 integrative-clustering 2 coca 2 cluster-analysis 2 package 2 r-stats 2 rstats 2 shiny 2 gwas 2 biomart 1 vcf-data 1 database-retrieval 1 population-genomics 1 snps 1 landscape-genetics 1 ensembl-servers 1 gene-duplication 1 genome 1 genome-annotation 1 copy-number-variation 1 genome-retrieval 1 cnv-analysis 1 sequenced-genomes 1 meta-analysis 1 metagenomics 1 proteome 1 peer-reviewed 1 ncbi-genbank 1 rpackage 1 rcppparallel 1 protein-sequences 1 ngrams 1 ngram 1 kmers 1 kmer-frequency-count 1 kmer-counting 1 kmer 1 k-mer-counting 1 k-mer 1 hashing-algorithms 1 hashing 1 feature-extraction 1 feature-engineering 1 dna-processing 1 bioinformatics-tool 1 rmarkdown 1 reactjs 1 unsupervised-learning 1 single-cell 1 robustness 1 parameter-optimization 1 machine-learning 1 genomic-visualizations 1 1000genomes 1 cluster-of-clusters 1 opencpu 1 omics 1 kernel-methods 1 charting 1 pathways 1 pathway-analysis 1 msigdb 1 gsea 1 gene-sets 1 enrichment-analysis 1 dash 1 reproducible-research 1 python 1 network-visualization 1 network 1 javascript 1 graphs 1 data-visualization 1 data-science 1 data-analytics 1 dashboard 1 plink2 1 plink 1 bed 1 tidy 1 intervals 1 simulation 1 breeding 1 analytics 1 topological-domains 1 hic 1 simulation-modeling 1 simulated-data 1 ngs-analysis 1 joss 1