Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
cran.r-project.org "single-cell-rna-seq" keyword
Canek 0.2.5
Batch Correction of Single Cell Transcriptome Data6 versions - Latest release: 5 months ago - 1 dependent repositories - 300 downloads last month - 4 stars on GitHub - 1 maintainer
scfetch 0.5.0 removed
Access and Format Single-Cell RNA-Seq Datasets from Public Resources1 version - Latest release: 6 months ago - 194 downloads last month - 23 stars on GitHub - 1 maintainer
AnanseSeurat 1.2.0
Construct ANANSE GRN-Analysis Seurat2 versions - Latest release: 6 months ago - 805 downloads last month - 8 stars on GitHub - 1 maintainer
Top 3.6% on cran.r-project.org
41 versions - Latest release: 6 days ago - 63 dependent packages - 433 dependent repositories - 51.7 thousand downloads last month - 2,133 stars on GitHub - 1 maintainer
Seurat 5.1.0
Tools for Single Cell Genomics41 versions - Latest release: 6 days ago - 63 dependent packages - 433 dependent repositories - 51.7 thousand downloads last month - 2,133 stars on GitHub - 1 maintainer
rPanglaoDB 0.2.1
Download and Merge Single-Cell RNA-Seq Data from the PanglaoDB Database3 versions - Latest release: about 3 years ago - 1 dependent package - 219 downloads last month - 23 stars on GitHub - 1 maintainer
scCustomize 2.1.2
Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing9 versions - Latest release: 3 months ago - 2.84 thousand downloads last month - 163 stars on GitHub - 1 maintainer
tidyseurat 0.8.0
Brings Seurat to the Tidyverse15 versions - Latest release: 4 months ago - 8 dependent repositories - 521 downloads last month - 138 stars on GitHub - 1 maintainer
numbat 1.4.0
Haplotype-Aware CNV Analysis from scRNA-Seq8 versions - Latest release: 3 months ago - 840 downloads last month - 150 stars on GitHub - 1 maintainer
SCpubr 2.0.2
Generate Publication Ready Visualizations of Single Cell Transcriptomics Data11 versions - Latest release: 7 months ago - 1 dependent repositories - 614 downloads last month - 127 stars on GitHub - 1 maintainer
conos 1.5.2
Clustering on Network of Samples13 versions - Latest release: 3 months ago - 2 dependent packages - 8 dependent repositories - 685 downloads last month - 187 stars on GitHub - 1 maintainer
SignacX 2.2.5
Cell Type Identification and Discovery from Single Cell Gene Expression Data6 versions - Latest release: over 2 years ago - 246 downloads last month - 22 stars on GitHub - 1 maintainer
pagoda2 1.0.12
Single Cell Analysis and Differential Expression13 versions - Latest release: 3 months ago - 3 dependent packages - 12 dependent repositories - 817 downloads last month - 187 stars on GitHub - 1 maintainer
cellpypes 0.3.0
Cell Type Pipes for Single-Cell RNA Sequencing Data2 versions - Latest release: 4 months ago - 231 downloads last month - 49 stars on GitHub - 1 maintainer
tidygate 0.4.10 removed
Add Gate Information to Your Tibble8 versions - Latest release: 4 months ago - 6 dependent repositories - 436 downloads last month - 18 stars on GitHub - 1 maintainer
Related Keywords
single-cell
8
seurat
5
r
4
ggplot2
4
single-cell-genomics
3
scrna-seq
3
transcriptomics
2
tidyverse
2
tibble
2
human-cell-atlas
2
dplyr
2
visualization
2
tidy-data
1
data-visualization
1
spatial-transcriptomics
1
single-cell-analysis
1
phylogeny
1
lineage-tracing
1
cnv-detection
1
cancer-genomics
1
umap
1
batch-effects
1
programmatic
1
pipe
1
interactive
1
gate
1
facs
1
drawing
1
dataviz
1
datavis
1
clustering
1
scrnaseq
1
classification-algorithm
1
celltype-annotation
1
cellular-phenotypes
1
batch-correction
1
rstats
1
publication-quality-plots
1
bioinformatics
1
bam
1
cellxgene
1
fastq
1
format-conversion-tool
1
geo
1
panglaodb
1
sra
1
ucsc-cell-browser
1
zenodo
1
grn-analysis
1
seurat-objects
1
single-cell-atac-seq
1
cran
1
data-integration
1
data-mining
1
rna-seq
1
customization
1
normalization
1
pca
1
purrr
1
sct
1
tidyr
1
transcripts
1
tsne
1