Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
Top 5.1% on cran.r-project.org
Top 2.2% downloads on cran.r-project.org
Top 1.2% dependent packages on cran.r-project.org
Top 1.2% dependent repos on cran.r-project.org
Top 4.6% forks on cran.r-project.org
Top 2.2% downloads on cran.r-project.org
Top 1.2% dependent packages on cran.r-project.org
Top 1.2% dependent repos on cran.r-project.org
Top 4.6% forks on cran.r-project.org
cran.r-project.org : irlba
Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices
Registry
-
Source
- Documentation
- JSON
purl: pkg:cran/irlba
Keywords: pca, principal-component-analysis, singular-value-decomposition, sparse-principal-components, svd
License: GPL-3.0
Latest release: over 2 years ago
First release: about 13 years ago
Dependent packages: 73
Dependent repositories: 223
Downloads: 42,814 last month
Stars: 121 on GitHub
Forks: 17 on GitHub
Docker dependents: 363
Docker downloads: 2,444,462
Total Commits: 297
Committers: 4
Average commits per author: 74.25
Development Distribution Score (DDS): 0.02
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: 14 days ago
Top 3.1% on cran.r-project.org
38 versions - Latest release: 17 days ago - 299 dependent packages - 1,194 dependent repositories - 656 thousand downloads last month - 1,418 stars on GitHub - 1 maintainer
broom 1.0.6
Convert Statistical Objects into Tidy Tibbles38 versions - Latest release: 17 days ago - 299 dependent packages - 1,194 dependent repositories - 656 thousand downloads last month - 1,418 stars on GitHub - 1 maintainer
seqgendiff 1.2.4
RNA-Seq Generation/Modification for Simulation6 versions - Latest release: 19 days ago - 1 dependent repositories - 243 downloads last month - 9 stars on GitHub - 1 maintainer
Top 3.6% on cran.r-project.org
41 versions - Latest release: 24 days ago - 63 dependent packages - 433 dependent repositories - 60.7 thousand downloads last month - 2,134 stars on GitHub - 1 maintainer
Seurat 5.1.0
Tools for Single Cell Genomics41 versions - Latest release: 24 days ago - 63 dependent packages - 433 dependent repositories - 60.7 thousand downloads last month - 2,134 stars on GitHub - 1 maintainer
spant 2.20.0
MR Spectroscopy Analysis Tools62 versions - Latest release: about 1 month ago - 963 downloads last month - 23 stars on GitHub - 1 maintainer
SpatialDDLS 1.0.2
Deconvolution of Spatial Transcriptomics Data Based on Neural Networks4 versions - Latest release: about 1 month ago - 569 downloads last month - 2 stars on GitHub - 1 maintainer
Top 1.7% on cran.r-project.org
14 versions - Latest release: about 1 month ago - 32 dependent packages - 165 dependent repositories - 308 stars on GitHub - 1 maintainer
uwot 0.2.2
The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction14 versions - Latest release: about 1 month ago - 32 dependent packages - 165 dependent repositories - 308 stars on GitHub - 1 maintainer
SPUTNIK 1.4.2
Spatially Automatic Denoising for Imaging Mass Spectrometry Toolkit19 versions - Latest release: about 2 months ago - 521 downloads last month - 4 stars on GitHub - 1 maintainer
PINSPlus 2.0.7
Clustering Algorithm for Data Integration and Disease Subtyping12 versions - Latest release: about 2 months ago - 4 dependent repositories - 669 downloads last month - 1 maintainer
Top 8.9% on cran.r-project.org
18 versions - Latest release: 2 months ago - 1 dependent package - 17 dependent repositories - 7.43 thousand downloads last month - 292 stars on GitHub - 1 maintainer
Signac 1.13.0
Analysis of Single-Cell Chromatin Data18 versions - Latest release: 2 months ago - 1 dependent package - 17 dependent repositories - 7.43 thousand downloads last month - 292 stars on GitHub - 1 maintainer
rliger 2.0.1
Linked Inference of Genomic Experimental Relationships5 versions - Latest release: 2 months ago - 1 dependent package - 13 dependent repositories - 1.43 thousand downloads last month - 360 stars on GitHub - 1 maintainer
RaceID 0.3.5
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from S...27 versions - Latest release: 2 months ago - 1 dependent repositories - 636 downloads last month - 1 maintainer
bdsvd 0.1-0
Block Structure Detection Using Singular Vectors1 version - Latest release: 2 months ago - 195 downloads last month - 1 maintainer
multivarious 0.2.0
Extensible Data Structures for Multivariate Analysis1 version - Latest release: 2 months ago - 174 downloads last month - 0 stars on GitHub - 1 maintainer
embed 1.1.4
Extra Recipes for Encoding Predictors19 versions - Latest release: 3 months ago - 2 dependent packages - 11 dependent repositories - 1.64 thousand downloads last month - 140 stars on GitHub - 1 maintainer
DR.SC 3.4
Joint Dimension Reduction and Spatial Clustering13 versions - Latest release: 3 months ago - 2 dependent packages - 2 dependent repositories - 423 downloads last month - 4 stars on GitHub - 1 maintainer
ProFAST 1.4
Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction3 versions - Latest release: 3 months ago - 188 downloads last month - 2 stars on GitHub - 1 maintainer
Top 4.5% on cran.r-project.org
71 versions - Latest release: 3 months ago - 941 dependent packages - 3,446 dependent repositories - 638 thousand downloads last month - 1 maintainer
igraph 2.0.3
Network Analysis and Visualization71 versions - Latest release: 3 months ago - 941 dependent packages - 3,446 dependent repositories - 638 thousand downloads last month - 1 maintainer
LSX 1.4.0
Semi-Supervised Algorithm for Document Scaling20 versions - Latest release: 3 months ago - 479 downloads last month - 54 stars on GitHub - 1 maintainer
pagoda2 1.0.12
Single Cell Analysis and Differential Expression13 versions - Latest release: 3 months ago - 3 dependent packages - 12 dependent repositories - 829 downloads last month - 191 stars on GitHub - 1 maintainer
conos 1.5.2
Clustering on Network of Samples13 versions - Latest release: 3 months ago - 2 dependent packages - 8 dependent repositories - 643 downloads last month - 188 stars on GitHub - 1 maintainer
absorber 1.0
Variable Selection in Nonparametric Models using B-Splines1 version - Latest release: 3 months ago - 271 downloads last month - 1 maintainer
sccore 1.0.5
Core Utilities for Single-Cell RNA-Seq10 versions - Latest release: 3 months ago - 5 dependent packages - 9 dependent repositories - 1.99 thousand downloads last month - 12 stars on GitHub - 1 maintainer
iGraphMatch 2.0.4
Tools for Graph Matching8 versions - Latest release: 4 months ago - 410 downloads last month - 9 stars on GitHub - 1 maintainer
Top 4.4% on cran.r-project.org
17 versions - Latest release: 4 months ago - 21 dependent packages - 31 dependent repositories - 3.93 thousand downloads last month - 136 stars on GitHub - 1 maintainer
metR 0.15.0 💰
Tools for Easier Analysis of Meteorological Fields17 versions - Latest release: 4 months ago - 21 dependent packages - 31 dependent repositories - 3.93 thousand downloads last month - 136 stars on GitHub - 1 maintainer
jackstraw 1.3.9
Statistical Inference for Unsupervised Learning8 versions - Latest release: 4 months ago - 12 dependent repositories - 350 downloads last month - 1 maintainer
ChemoSpec 6.1.10
Exploratory Chemometrics for Spectroscopy43 versions - Latest release: 4 months ago - 3 dependent packages - 7 dependent repositories - 1.06 thousand downloads last month - 55 stars on GitHub - 1 maintainer
HCD 1.0 removed
Hierarchical Community Detection by Recursive Partitioning2 versions - Latest release: 4 months ago - 55 downloads last month - 1 maintainer
ChemoSpecUtils 1.0.4
Functions Supporting Packages ChemoSpec and ChemoSpec2D14 versions - Latest release: 4 months ago - 2 dependent packages - 4 dependent repositories - 736 downloads last month - 3 stars on GitHub - 1 maintainer
fastTopics 0.6-163
Fast Algorithms for Fitting Topic Models and Non-Negative Matrix Factorizations to Count Data3 versions - Latest release: 5 months ago - 1 dependent repositories - 418 downloads last month - 74 stars on GitHub - 1 maintainer
MOCHA 1.0.2 removed
Modeling for Single-Cell Open Chromatin Analysis4 versions - Latest release: 6 months ago - 15.1 thousand downloads last month - 1 maintainer
mixsqp 0.3-54
Sequential Quadratic Programming for Fast Maximum-Likelihood Estimation of Mixture Proportions7 versions - Latest release: 6 months ago - 4 dependent packages - 8 dependent repositories - 7.21 thousand downloads last month - 10 stars on GitHub - 1 maintainer
Canek 0.2.5
Batch Correction of Single Cell Transcriptome Data6 versions - Latest release: 6 months ago - 1 dependent repositories - 300 downloads last month - 4 stars on GitHub - 1 maintainer
Top 4.0% on cran.r-project.org
10 versions - Latest release: 6 months ago - 55 dependent packages - 368 dependent repositories - 48.7 thousand downloads last month - 250 stars on GitHub - 1 maintainer
Rtsne 0.17
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation10 versions - Latest release: 6 months ago - 55 dependent packages - 368 dependent repositories - 48.7 thousand downloads last month - 250 stars on GitHub - 1 maintainer
Top 8.8% on cran.r-project.org
6 versions - Latest release: 6 months ago - 7 dependent packages - 38 dependent repositories - 9.92 thousand downloads last month - 1 maintainer
harmony 1.2.0 removed
Fast, Sensitive, and Accurate Integration of Single Cell Data6 versions - Latest release: 6 months ago - 7 dependent packages - 38 dependent repositories - 9.92 thousand downloads last month - 1 maintainer
Top 8.7% on cran.r-project.org
10 versions - Latest release: 7 months ago - 19 dependent packages - 42 dependent repositories - 6.14 thousand downloads last month - 1 maintainer
text2vec 0.6.4
Modern Text Mining Framework for R10 versions - Latest release: 7 months ago - 19 dependent packages - 42 dependent repositories - 6.14 thousand downloads last month - 1 maintainer
Top 6.2% on cran.r-project.org
11 versions - Latest release: 8 months ago - 5 dependent packages - 33 dependent repositories - 29.9 thousand downloads last month - 197 stars on GitHub - 1 maintainer
sctransform 0.4.1
Variance Stabilizing Transformations for Single Cell UMI Data11 versions - Latest release: 8 months ago - 5 dependent packages - 33 dependent repositories - 29.9 thousand downloads last month - 197 stars on GitHub - 1 maintainer
Top 8.8% on cran.r-project.org
24 versions - Latest release: 9 months ago - 6 dependent packages - 13 dependent repositories - 2.18 thousand downloads last month - 207 stars on GitHub - 1 maintainer
recommenderlab 1.0.6
Lab for Developing and Testing Recommender Algorithms24 versions - Latest release: 9 months ago - 6 dependent packages - 13 dependent repositories - 2.18 thousand downloads last month - 207 stars on GitHub - 1 maintainer
GFM 1.2.1
Generalized Factor Model3 versions - Latest release: 10 months ago - 234 downloads last month - 2 stars on GitHub - 1 maintainer
epca 1.1.0
Exploratory Principal Component Analysis3 versions - Latest release: 11 months ago - 228 downloads last month - 11 stars on GitHub - 1 maintainer
randnet 0.7 removed
Random Network Model Estimation, Selection and Parameter Tuning6 versions - Latest release: about 1 year ago - 3 dependent packages - 2 dependent repositories - 289 downloads last month - 1 maintainer
guidedPLS 1.0.0
Supervised Dimensional Reduction by Guided Partial Least Squares2 versions - Latest release: about 1 year ago - 217 downloads last month - 0 stars on GitHub - 1 maintainer
penAFT 0.3.0
Fit the Regularized Gehan Estimator with Elastic Net and Sparse Group Lasso Penalties2 versions - Latest release: about 1 year ago - 1 dependent repositories - 248 downloads last month - 1 maintainer
symphony 0.1.1 removed
Efficient and Precise Single-Cell Reference Atlas Mapping2 versions - Latest release: over 1 year ago - 2 dependent repositories - 354 downloads last month - 1 maintainer
Top 9.9% on cran.r-project.org
16 versions - Latest release: over 1 year ago - 6 dependent packages - 7 dependent repositories - 6.71 thousand downloads last month - 17 stars on GitHub - 1 maintainer
KernelKnn 1.1.5 💰
Kernel k Nearest Neighbors16 versions - Latest release: over 1 year ago - 6 dependent packages - 7 dependent repositories - 6.71 thousand downloads last month - 17 stars on GitHub - 1 maintainer
SCORPION 1.0.1
Single Cell Oriented Reconstruction of PANDA Individual Optimized Networks3 versions - Latest release: over 1 year ago - 203 downloads last month - 1 maintainer
MFPCA 1.3-10
Multivariate Functional Principal Component Analysis for Data Observed on Different Dimensional D...15 versions - Latest release: over 1 year ago - 4 dependent packages - 1 dependent repositories - 468 downloads last month - 27 stars on GitHub - 1 maintainer
Top 9.0% on cran.r-project.org
6 versions - Latest release: over 1 year ago - 3 dependent packages - 21 dependent repositories - 2.59 thousand downloads last month - 324 stars on GitHub - 1 maintainer
widyr 0.1.5
Widen, Process, then Re-Tidy Data6 versions - Latest release: over 1 year ago - 3 dependent packages - 21 dependent repositories - 2.59 thousand downloads last month - 324 stars on GitHub - 1 maintainer
mixedCCA 1.6.2
Sparse Canonical Correlation Analysis for High-Dimensional Mixed Data6 versions - Latest release: over 1 year ago - 1 dependent repositories - 478 downloads last month - 1 maintainer
clustrd 1.4.0
Methods for Joint Dimension Reduction and Clustering22 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 506 downloads last month - 1 maintainer
MOSS 0.2.2
Multi-Omic Integration via Sparse Singular Value Decomposition3 versions - Latest release: about 2 years ago - 802 downloads last month - 5 stars on GitHub - 1 maintainer
ClustAssess 0.3.0
Tools for Assessing Clustering3 versions - Latest release: over 2 years ago - 274 downloads last month - 19 stars on GitHub - 1 maintainer
iSFun 1.1.0
Integrative Dimension Reduction Analysis for Multi-Source Data2 versions - Latest release: over 2 years ago - 199 downloads last month - 1 maintainer
KnockoffScreen 0.3.0
Whole-Genome Sequencing Data Analysis via Knockoff Statistics3 versions - Latest release: over 2 years ago - 269 downloads last month - 1 maintainer
fastCorrDiff 0.5 removed
Fast Differential Correlation Matrix Screening1 version - Latest release: over 2 years ago - 1 maintainer
multiviewtest 2.0.1 removed
Hypothesis Tests for Association Between Subgroups in Two Data Views3 versions - Latest release: over 2 years ago
ChemoSpec2D 0.5.0
Exploratory Chemometrics for 2D Spectroscopy7 versions - Latest release: over 2 years ago - 1 dependent package - 2 dependent repositories - 345 downloads last month - 2 stars on GitHub - 1 maintainer
DUBStepR 1.2.0 removed
Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data5 versions - Latest release: over 2 years ago - 223 downloads last month - 1 maintainer
textmineR 3.0.5
Functions for Text Mining and Topic Modeling20 versions - Latest release: almost 3 years ago - 5 dependent packages - 8 dependent repositories - 1.33 thousand downloads last month - 1 maintainer
dyndimred 1.0.4
Dimensionality Reduction Methods in a Common Format4 versions - Latest release: about 3 years ago - 3 dependent packages - 4 dependent repositories - 365 downloads last month - 7 stars on GitHub - 1 maintainer
hierBipartite 0.0.2
Bipartite Graph-Based Hierarchical Clustering1 version - Latest release: over 3 years ago - 187 downloads last month - 1 maintainer
rescue 1.0.3 removed
Bootstrap Imputation for Single-Cell RNA-Seq Data1 version - Latest release: almost 4 years ago - 251 downloads last month - 12 stars on GitHub - 1 maintainer
spathial 0.1.2
Evolutionary Analysis2 versions - Latest release: about 4 years ago - 176 downloads last month - 1 maintainer
denoiseR 1.0.2
Regularized Low Rank Matrix Estimation2 versions - Latest release: over 4 years ago - 1 dependent repositories - 222 downloads last month - 1 maintainer
lmds 0.1.0
Landmark Multi-Dimensional Scaling1 version - Latest release: over 4 years ago - 3 dependent packages - 3 dependent repositories - 431 downloads last month - 7 stars on GitHub - 1 maintainer
fuser 1.0.1
Fused Lasso for High-Dimensional Regression over Groups2 versions - Latest release: almost 6 years ago - 182 downloads last month - 1 maintainer
lolR 1.0.1
Linear Optimal Low-Rank Projection4 versions - Latest release: over 6 years ago - 200 downloads last month - 19 stars on GitHub - 1 maintainer
DrImpute 1.0
Imputing Dropout Events in Single-Cell RNA-Sequencing Data1 version - Latest release: almost 7 years ago - 3 dependent repositories - 294 downloads last month - 4 stars on GitHub - 1 maintainer
DDRTree 0.1.5
Learning Principal Graphs with DDRTree3 versions - Latest release: about 7 years ago - 3 dependent repositories - 2.31 thousand downloads last month - 1 maintainer
logisticPCA 0.2
Binary Dimensionality Reduction2 versions - Latest release: about 8 years ago - 1 dependent package - 4 dependent repositories - 265 downloads last month - 49 stars on GitHub - 1 maintainer
OmicKriging 1.4.0
Poly-Omic Prediction of Complex TRaits4 versions - Latest release: about 8 years ago - 171 downloads last month - 1 maintainer
s4vd 1.1-1
Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection2 versions - Latest release: over 8 years ago - 1 dependent package - 3 dependent repositories - 372 downloads last month - 1 maintainer
steadyICA 1.0
ICA and Tests of Independence via Multivariate Distance Covariance1 version - Latest release: over 8 years ago - 1 dependent package - 1 dependent repositories - 585 downloads last month - 1 maintainer
ERP 1.0.1
Significance Analysis of Event-Related Potentials Data5 versions - Latest release: about 10 years ago - 215 downloads last month - 1 maintainer