Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
Top 6.5% downloads on cran.r-project.org
Top 3.3% dependent packages on cran.r-project.org
Top 3.5% dependent repos on cran.r-project.org
Top 3.3% dependent packages on cran.r-project.org
Top 3.5% dependent repos on cran.r-project.org
cran.r-project.org : pegas
Population and Evolutionary Genetics Analysis System
Registry
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Source
- Homepage
- Documentation
- JSON
purl: pkg:cran/pegas
License: CNRI-Python-GPL-Compatible,CNRI-Python-GPL-Compatible
Latest release: 6 months ago
First release: about 15 years ago
Dependent packages: 20
Dependent repositories: 50
Downloads: 5,556 last month
Docker dependents: 12
Docker downloads: 43,448
Last synced: 14 days ago
Top 9.7% on cran.r-project.org
42 versions - Latest release: 3 months ago - 7 dependent packages - 13 dependent repositories - 7.42 thousand downloads last month - 67 stars on GitHub - 1 maintainer
poppr 2.9.6 💰
Genetic Analysis of Populations with Mixed Reproduction42 versions - Latest release: 3 months ago - 7 dependent packages - 13 dependent repositories - 7.42 thousand downloads last month - 67 stars on GitHub - 1 maintainer
RAINBOWR 0.1.35
Genome-Wide Association Study with SNP-Set Methods10 versions - Latest release: 3 months ago - 1 dependent repositories - 347 downloads last month - 1 maintainer
geneHapR 1.2.4
Gene Haplotype Statistics, Phenotype Association and Visualization8 versions - Latest release: 3 months ago - 674 downloads last month - 1 maintainer
dartR.base 0.65
Analysing 'SNP' and 'Silicodart' Data - Basic Functions2 versions - Latest release: 6 months ago - 2 dependent packages - 1 dependent repositories - 676 downloads last month - 29 stars on GitHub - 1 maintainer
haplotypes 1.1.3
Manipulating DNA Sequences and Estimating Unambiguous Haplotype Network with Statistical Parsimony6 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 415 downloads last month - 1 maintainer
dartR 2.9.7
Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment...17 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 1.49 thousand downloads last month - 29 stars on GitHub - 1 maintainer
graph4lg 1.8.0 removed
Build Graphs for Landscape Genetics Analysis10 versions - Latest release: over 1 year ago - 1 dependent repositories - 461 downloads last month - 1 maintainer
Top 6.8% on cran.r-project.org
43 versions - Latest release: over 1 year ago - 29 dependent packages - 83 dependent repositories - 12.9 thousand downloads last month - 162 stars on GitHub - 1 maintainer
adegenet 2.1.10
Exploratory Analysis of Genetic and Genomic Data43 versions - Latest release: over 1 year ago - 29 dependent packages - 83 dependent repositories - 12.9 thousand downloads last month - 162 stars on GitHub - 1 maintainer
pagoo 0.3.17 removed
Analyze Bacterial Pangenomes in R with 'Pagoo'5 versions - Latest release: over 1 year ago - 1 dependent repositories - 255 downloads last month - 23 stars on GitHub - 1 maintainer
PopGenReport 3.0.7
A Simple Framework to Analyse Population and Landscape Genetic Data13 versions - Latest release: about 2 years ago - 2 dependent packages - 5 dependent repositories - 1.26 thousand downloads last month - 5 stars on GitHub - 1 maintainer
HACSim 1.0.6
Iterative Extrapolation of Species' Haplotype Accumulation Curves for Genetic Diversity Assessment8 versions - Latest release: about 2 years ago - 747 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.9% on cran.r-project.org
15 versions - Latest release: about 2 years ago - 6 dependent packages - 21 dependent repositories - 5.8 thousand downloads last month - 23 stars on GitHub - 1 maintainer
hierfstat 0.5-11
Estimation and Tests of Hierarchical F-Statistics15 versions - Latest release: about 2 years ago - 6 dependent packages - 21 dependent repositories - 5.8 thousand downloads last month - 23 stars on GitHub - 1 maintainer
coalescentMCMC 0.4-4
MCMC Algorithms for the Coalescent6 versions - Latest release: about 2 years ago - 1 dependent repositories - 337 downloads last month - 1 maintainer
StAMPP 1.6.3
Statistical Analysis of Mixed Ploidy Populations9 versions - Latest release: almost 3 years ago - 4 dependent packages - 1 dependent repositories - 1.28 thousand downloads last month - 1 stars on GitHub - 1 maintainer
HierDpart 1.5.0 removed
Partitioning Hierarchical Diversity and Differentiation Across Metrics and Scales, from Genes to ...5 versions - Latest release: about 3 years ago - 3 stars on GitHub - 1 maintainer
BarcodingR 1.0-3
Species Identification using DNA Barcodes3 versions - Latest release: about 4 years ago - 262 downloads last month - 1 maintainer
spider 1.5.0
Species Identity and Evolution in R8 versions - Latest release: over 6 years ago - 3 dependent packages - 4 dependent repositories - 341 downloads last month - 1 maintainer
mmod 1.3.3
Modern Measures of Population Differentiation12 versions - Latest release: about 7 years ago - 5 dependent packages - 8 dependent repositories - 1.66 thousand downloads last month - 10 stars on GitHub - 1 maintainer
adhoc 1.1 removed
Calculate Ad Hoc Distance Thresholds for DNA Barcoding Identification2 versions - Latest release: about 7 years ago
msap 1.1.8 removed
Statistical analysis for Methylation-sensitive Amplification Polymorphism data8 versions - Latest release: about 10 years ago