Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

Top 3.6% on cran.r-project.org
Top 1.4% downloads on cran.r-project.org
Top 0.5% dependent packages on cran.r-project.org
Top 0.6% dependent repos on cran.r-project.org
Top 0.7% forks on cran.r-project.org

cran.r-project.org : vegan

Community Ecology Package

Registry - Source - Documentation - JSON
purl: pkg:cran/vegan
Keywords: ecological-modelling, ecology, ordination, r
License: GPL-2.0
Latest release: over 1 year ago
First release: over 22 years ago
Dependent packages: 202
Dependent repositories: 563
Downloads: 86,368 last month
Stars: 424 on GitHub
Forks: 94 on GitHub
Docker dependents: 35
Docker downloads: 39
Total Commits: 4572
Committers: 36
Average commits per author: 127.0
Development Distribution Score (DDS): 0.479
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: 1 day ago

collpcm 1.4
Collapsed Latent Position Cluster Model for Social Networks
5 versions - Latest release: 5 days ago - 273 downloads last month - 1 maintainer
Top 6.3% on cran.r-project.org
seriation 1.5.5
Infrastructure for Ordering Objects Using Seriation
49 versions - Latest release: 11 days ago - 28 dependent packages - 78 dependent repositories - 30.5 thousand downloads last month - 73 stars on GitHub - 1 maintainer
ecoregime 0.2.0
Analysis of Ecological Dynamic Regimes
3 versions - Latest release: 11 days ago - 248 downloads last month - 1 stars on GitHub - 1 maintainer
codep 1.2-3
Multiscale Codependence Analysis
10 versions - Latest release: 12 days ago - 358 downloads last month - 1 maintainer
supportR 1.3.0
Support Functions for Wrangling and Visualization
4 versions - Latest release: 16 days ago - 322 downloads last month - 5 stars on GitHub - 1 maintainer
RaceID 0.3.5
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from S...
27 versions - Latest release: 25 days ago - 1 dependent repositories - 526 downloads last month - 1 maintainer
microeco 1.6.0
Microbial Community Ecology Data Analysis
33 versions - Latest release: 28 days ago - 3 dependent packages - 3 dependent repositories - 2.73 thousand downloads last month - 171 stars on GitHub - 1 maintainer
vegan3d 1.3-0
Static and Dynamic 3D and Editable Interactive Plots for the 'vegan' Package
9 versions - Latest release: about 1 month ago - 2 dependent packages - 2 dependent repositories - 1.42 thousand downloads last month - 19 stars on GitHub - 1 maintainer
Top 9.7% on cran.r-project.org
poppr 2.9.6 💰
Genetic Analysis of Populations with Mixed Reproduction
42 versions - Latest release: about 1 month ago - 7 dependent packages - 13 dependent repositories - 6.16 thousand downloads last month - 67 stars on GitHub - 1 maintainer
Top 5.0% on cran.r-project.org
geomorph 4.0.7
Geometric Morphometric Analyses of 2D and 3D Landmark Data
44 versions - Latest release: about 2 months ago - 11 dependent packages - 17 dependent repositories - 3.01 thousand downloads last month - 73 stars on GitHub - 1 maintainer
mFD 1.0.7
Compute and Illustrate the Multiple Facets of Functional Diversity
8 versions - Latest release: 2 months ago - 489 downloads last month - 19 stars on GitHub - 1 maintainer
cocorresp 0.4-4
Co-Correspondence Analysis Methods
13 versions - Latest release: 2 months ago - 802 downloads last month - 4 stars on GitHub - 1 maintainer
goeveg 0.7.4
Functions for Community Data and Ordinations
13 versions - Latest release: 2 months ago - 2 dependent packages - 1 dependent repositories - 1.55 thousand downloads last month - 4 stars on GitHub - 1 maintainer
NADA2 1.1.6
Data Analysis for Censored Environmental Data
10 versions - Latest release: 2 months ago - 1 dependent repositories - 640 downloads last month - 11 stars on GitHub - 1 maintainer
GABB 0.3.8
Facilitation of Data Preparation and Plotting Procedures for RDA and PCA Analyses
8 versions - Latest release: 2 months ago - 293 downloads last month - 1 maintainer
Platypus 3.5.0
Single-Cell Immune Repertoire and Gene Expression Analysis
5 versions - Latest release: 2 months ago - 312 downloads last month - 1 maintainer
metacoder 0.3.7
Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data
13 versions - Latest release: 2 months ago - 1 dependent package - 4 dependent repositories - 1.04 thousand downloads last month - 2 stars on GitHub - 1 maintainer
BAT 2.9.6
Biodiversity Assessment Tools
40 versions - Latest release: 2 months ago - 2 dependent packages - 1 dependent repositories - 1.45 thousand downloads last month - 1 maintainer
surveyvoi 1.0.6
Survey Value of Information
5 versions - Latest release: 2 months ago - 642 downloads last month - 2 stars on GitHub - 1 maintainer
naturaList 0.5.2
Classify Occurrences by Confidence Levels in the Species ID
5 versions - Latest release: 3 months ago - 276 downloads last month - 0 stars on GitHub - 1 maintainer
enveomics.R 1.9.1
Various Utilities for Microbial Genomics and Metagenomics
23 versions - Latest release: 3 months ago - 451 downloads last month - 1 maintainer
vegdata 0.9.12
Access Vegetation Databases and Treat Taxonomy
45 versions - Latest release: 3 months ago - 4 dependent packages - 5 dependent repositories - 807 downloads last month - 1 maintainer
raptr 1.0.1
Representative and Adequate Prioritization Toolkit in R
13 versions - Latest release: 3 months ago - 821 downloads last month - 7 stars on GitHub - 1 maintainer
mixKernel 0.9-1
Omics Data Integration Using Kernel Methods
10 versions - Latest release: 3 months ago - 1 dependent repositories - 322 downloads last month - 1 maintainer
spmoran 0.2.3
Fast Spatial Regression using Moran Eigenvectors
27 versions - Latest release: 3 months ago - 1 dependent repositories - 497 downloads last month - 1 maintainer
GCalignR 1.0.6
Simple Peak Alignment for Gas-Chromatography Data
7 versions - Latest release: 3 months ago - 350 downloads last month - 3 stars on GitHub - 1 maintainer
asbio 1.9-7 removed
A Collection of Statistical Tools for Biologists
52 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 1.77 thousand downloads last month - 1 maintainer
sads 0.6.3
Maximum Likelihood Models for Species Abundance Distributions
11 versions - Latest release: 3 months ago - 6 dependent repositories - 698 downloads last month - 22 stars on GitHub - 1 maintainer
ggordiplots 0.4.3
Make 'ggplot2' Versions of Vegan's Ordiplots
2 versions - Latest release: 4 months ago - 564 downloads last month - 5 stars on GitHub - 1 maintainer
glmm.hp 0.1-2
Hierarchical Partitioning of Marginal R2 for Generalized Mixed-Effect Models
12 versions - Latest release: 4 months ago - 690 downloads last month - 4 stars on GitHub - 1 maintainer
Top 8.9% on cran.r-project.org
TraMineR 2.2-9
Trajectory Miner: a Sequence Analysis Toolkit
47 versions - Latest release: 4 months ago - 12 dependent packages - 13 dependent repositories - 2.08 thousand downloads last month - 1 maintainer
yaImpute 1.0-34
Nearest Neighbor Observation Imputation and Evaluation Tools
34 versions - Latest release: 5 months ago - 12 dependent packages - 44 dependent repositories - 4.09 thousand downloads last month - 2 stars on GitHub - 1 maintainer
biplotbootGUI 1.3
Bootstrap on Classical Biplots and Clustering Disjoint Biplot
4 versions - Latest release: 5 months ago - 310 downloads last month - 1 maintainer
isopam 1.3.0 removed
Clustering of Sites with Species Data
12 versions - Latest release: 5 months ago - 1 dependent repositories - 326 downloads last month - 1 maintainer
Top 6.6% on cran.r-project.org
vcfR 1.15.0
Manipulate and Visualize VCF Data
16 versions - Latest release: 5 months ago - 25 dependent packages - 55 dependent repositories - 7.25 thousand downloads last month - 231 stars on GitHub - 1 maintainer
evolqg 0.3-4
Evolutionary Quantitative Genetics
17 versions - Latest release: 5 months ago - 2 dependent packages - 2 dependent repositories - 373 downloads last month - 9 stars on GitHub - 1 maintainer
Top 9.2% on cran.r-project.org
bipartite 2.19
Visualising Bipartite Networks and Calculating Some (Ecological) Indices
54 versions - Latest release: 5 months ago - 15 dependent packages - 31 dependent repositories - 3.47 thousand downloads last month - 35 stars on GitHub - 1 maintainer
ausplotsR 2.0.5
TERN AusPlots Australian Ecosystem Monitoring Data
13 versions - Latest release: 5 months ago - 1 dependent repositories - 450 downloads last month - 1 maintainer
QFASA 1.2.0
Quantitative Fatty Acid Signature Analysis
8 versions - Latest release: 5 months ago - 221 downloads last month - 1 maintainer
Momocs 1.4.1
Morphometrics using R
19 versions - Latest release: 6 months ago - 1 dependent package - 3 dependent repositories - 608 downloads last month - 49 stars on GitHub - 1 maintainer
Xplortext 1.5.3
Statistical Analysis of Textual Data
10 versions - Latest release: 6 months ago - 223 downloads last month - 1 maintainer
EcoIndR 2.0
Ecological Indicators
10 versions - Latest release: 6 months ago - 253 downloads last month - 1 maintainer
ecotraj 0.1.1
Ecological Trajectory Analysis
3 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 319 downloads last month - 3 stars on GitHub - 1 maintainer
AlleleShift 1.1-2 removed
Predict and Visualize Population-Level Changes in Allele Frequencies in Response to Climate Change
6 versions - Latest release: 6 months ago - 83 downloads last month - 1 maintainer
FCPS 1.3.4
Fundamental Clustering Problems Suite
12 versions - Latest release: 6 months ago - 2 dependent packages - 2 dependent repositories - 948 downloads last month - 1 maintainer
rioja 1.0-6
Analysis of Quaternary Science Data
25 versions - Latest release: 6 months ago - 3 dependent packages - 9 dependent repositories - 1.32 thousand downloads last month - 10 stars on GitHub - 1 maintainer
Top 10.0% on cran.r-project.org
adespatial 0.3-23 removed
Multivariate Multiscale Spatial Analysis
25 versions - Latest release: 6 months ago - 4 dependent packages - 12 dependent repositories - 2.17 thousand downloads last month - 29 stars on GitHub - 1 maintainer
Top 7.9% on cran.r-project.org
ecospat 4.0.0
Spatial Ecology Miscellaneous Methods
16 versions - Latest release: 6 months ago - 8 dependent packages - 12 dependent repositories - 2.03 thousand downloads last month - 1 maintainer
ProjectionBasedClustering 1.2.1
Projection Based Clustering
15 versions - Latest release: 7 months ago - 4 dependent packages - 1 dependent repositories - 508 downloads last month - 1 maintainer
SQMtools 1.6.3
Analyze Results Generated by the 'SqueezeMeta' Pipeline
2 versions - Latest release: 7 months ago - 301 downloads last month - 335 stars on GitHub - 1 maintainer
GUniFrac 1.8
Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate M...
9 versions - Latest release: 8 months ago - 5 dependent packages - 17 dependent repositories - 1.58 thousand downloads last month - 1 maintainer
biosampleR 1.0.4
Biodiversity Index Calculation and Bootstrap Confidence Interval Estimation
1 version - Latest release: 8 months ago - 193 downloads last month - 0 stars on GitHub - 1 maintainer
Top 1.2% on cran.r-project.org
tmap 3.3-4
Thematic Maps
29 versions - Latest release: 8 months ago - 56 dependent packages - 158 dependent repositories - 21.5 thousand downloads last month - 838 stars on GitHub - 1 maintainer
LDM 6.0.1
Testing Hypotheses About the Microbiome using the Linear Decomposition Model
2 versions - Latest release: 8 months ago - 180 downloads last month - 23 stars on GitHub - 1 maintainer
hagis 3.1.11
Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity
10 versions - Latest release: 8 months ago - 348 downloads last month - 5 stars on GitHub - 1 maintainer
otuSummary 0.1.2
Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rar...
3 versions - Latest release: 8 months ago - 1 dependent package - 1 dependent repositories - 302 downloads last month - 0 stars on GitHub - 1 maintainer
TOmicsVis 2.0.0
Transcriptome Visualization Process Scheme
3 versions - Latest release: 8 months ago - 223 downloads last month - 52 stars on GitHub - 1 maintainer
provenance 4.2
Statistical Toolbox for Sedimentary Provenance Analysis
26 versions - Latest release: 8 months ago - 1 dependent package - 1 dependent repositories - 383 downloads last month - 1 maintainer
SoundShape 1.3.0
Sound Waves Onto Morphometric Data
5 versions - Latest release: 8 months ago - 9 stars on GitHub - 1 maintainer
forams 2.0-6
Foraminifera and Community Ecology Analyses
9 versions - Latest release: 8 months ago - 234 downloads last month - 1 maintainer
patternize 0.0.5
Quantification of Color Pattern Variation
5 versions - Latest release: 8 months ago - 298 downloads last month - 28 stars on GitHub - 1 maintainer
nodiv 1.4.2
Compares the Distribution of Sister Clades Through a Phylogeny
21 versions - Latest release: 8 months ago - 390 downloads last month - 2 stars on GitHub - 1 maintainer
untb 1.7-7
Ecological Drift under the UNTB
21 versions - Latest release: 8 months ago - 2 dependent packages - 3 dependent repositories - 443 downloads last month - 3 stars on GitHub - 1 maintainer
restoptr 1.0.6
Ecological Restoration Planning
7 versions - Latest release: 8 months ago - 664 downloads last month - 11 stars on GitHub - 1 maintainer
chemodiv 0.3.0
Analysing Chemodiversity of Phytochemical Data
4 versions - Latest release: 9 months ago - 290 downloads last month - 2 stars on GitHub - 1 maintainer
phyloregion 1.0.8
Biogeographic Regionalization and Macroecology
4 versions - Latest release: 9 months ago - 2 dependent packages - 3 dependent repositories - 16 stars on GitHub - 1 maintainer
ecan 0.2.1 removed
Ecological Analysis and Visualization
2 versions - Latest release: 10 months ago - 541 downloads last month - 0 stars on GitHub - 1 maintainer
Rarefy 1.1.1 removed
Rarefaction Methods
3 versions - Latest release: 10 months ago - 457 downloads last month - 1 maintainer
dartR 2.9.7
Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment...
17 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 1.46 thousand downloads last month - 29 stars on GitHub - 1 maintainer
RRphylo 2.8.0
Phylogenetic Ridge Regression Methods for Comparative Studies
14 versions - Latest release: 11 months ago - 1 dependent repositories - 458 downloads last month - 1 maintainer
canaper 1.0.1
Categorical Analysis of Neo- And Paleo-Endemism
2 versions - Latest release: 12 months ago - 202 downloads last month - 6 stars on GitHub - 1 maintainer
cml 0.2.2
Conditional Manifold Learning
6 versions - Latest release: about 1 year ago - 230 downloads last month - 1 maintainer
AICcPermanova 0.0.2
Model Selection of PERMANOVA Models Using AICc
2 versions - Latest release: about 1 year ago - 373 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.3% on cran.r-project.org
labdsv 2.1-0
Ordination and Multivariate Analysis for Ecology
13 versions - Latest release: about 1 year ago - 9 dependent packages - 19 dependent repositories - 2.52 thousand downloads last month - 1 maintainer
vegtable 0.1.8
Handling Vegetation Data Sets
9 versions - Latest release: about 1 year ago - 2 dependent repositories - 288 downloads last month - 5 stars on GitHub - 1 maintainer
mcMST 1.1.1
A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem
3 versions - Latest release: about 1 year ago - 181 downloads last month - 3 stars on GitHub - 1 maintainer
palaeoSig 2.1-3 removed
Significance Tests for Palaeoenvironmental Reconstructions
7 versions - Latest release: about 1 year ago - 1 dependent repositories - 186 downloads last month - 3 stars on GitHub - 1 maintainer
Top 2.8% on cran.r-project.org
mirt 1.38.1
Multidimensional Item Response Theory
68 versions - Latest release: about 1 year ago - 47 dependent packages - 52 dependent repositories - 6.13 thousand downloads last month - 193 stars on GitHub - 1 maintainer
MiRKAT 1.2.3
Microbiome Regression-Based Kernel Association Tests
11 versions - Latest release: about 1 year ago - 3 dependent repositories - 359 downloads last month - 1 maintainer
shipunov 1.17.1
Miscellaneous Functions from Alexey Shipunov
19 versions - Latest release: about 1 year ago - 392 downloads last month - 1 maintainer
Arothron 2.0.5
Geometric Morphometric Methods and Virtual Anthropology Tools
9 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 384 downloads last month - 1 maintainer
graph4lg 1.8.0 removed
Build Graphs for Landscape Genetics Analysis
10 versions - Latest release: about 1 year ago - 1 dependent repositories - 461 downloads last month - 1 maintainer
Top 6.8% on cran.r-project.org
adegenet 2.1.10
Exploratory Analysis of Genetic and Genomic Data
43 versions - Latest release: over 1 year ago - 28 dependent packages - 83 dependent repositories - 9.3 thousand downloads last month - 164 stars on GitHub - 1 maintainer
stops 1.0-1
Structure Optimized Proximity Scaling
1 version - Latest release: over 1 year ago - 305 downloads last month - 1 maintainer
tidypaleo 0.1.3
Tidy Tools for Paleoenvironmental Archives
4 versions - Latest release: over 1 year ago - 309 downloads last month - 34 stars on GitHub - 1 maintainer
idar 1.5
Individual Diversity-Area Relationships
6 versions - Latest release: over 1 year ago - 241 downloads last month - 1 maintainer
dynRB 0.18
Dynamic Range Boxes
15 versions - Latest release: over 1 year ago - 343 downloads last month - 1 maintainer
shapeR 1.0-1
Collection and Analysis of Otolith Shape Data
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 230 downloads last month - 8 stars on GitHub - 1 maintainer
fundiversity 1.1.1
Easy Computation of Functional Diversity Indices
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 418 downloads last month - 25 stars on GitHub - 1 maintainer
pagoo 0.3.17
Analyze Bacterial Pangenomes in R with 'Pagoo'
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 255 downloads last month - 23 stars on GitHub - 1 maintainer
metrix 1.1.0
Water Quality Metrics Calculator
2 versions - Latest release: over 1 year ago - 267 downloads last month - 1 maintainer
GOCompare 1.0.2
Comprehensive GO Terms Comparison Between Species
4 versions - Latest release: over 1 year ago - 277 downloads last month - 9 stars on GitHub - 1 maintainer
ordr 0.1.1
A 'tidyverse' Extension for Ordinations and Biplots
2 versions - Latest release: over 1 year ago - 2 dependent repositories - 180 downloads last month - 17 stars on GitHub - 1 maintainer
liayson 1.0.5 removed
Linking Singe-Cell Transcriptomes Atween Contemporary Subpopulation Genomes
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 181 downloads last month - 6 stars on GitHub - 1 maintainer
Rtapas 1.1 removed
Random Tanglegram Partitions
3 versions - Latest release: over 1 year ago - 312 downloads last month - 1 maintainer
divDyn 0.8.2
Diversity Dynamics using Fossil Sampling Data
6 versions - Latest release: over 1 year ago - 2 dependent packages - 2 dependent repositories - 342 downloads last month - 10 stars on GitHub - 1 maintainer
pez 1.2-4
Phylogenetics for the Environmental Sciences
9 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 518 downloads last month - 1 maintainer
vegclust 2.0.2
Fuzzy Clustering of Vegetation Data
10 versions - Latest release: over 1 year ago - 3 dependent packages - 5 dependent repositories - 316 downloads last month - 2 stars on GitHub - 1 maintainer
ecostats 1.1.11
Code and Data Accompanying the Eco-Stats Text (Warton 2022)
4 versions - Latest release: over 1 year ago - 303 downloads last month - 1 maintainer
dispRity 1.7.0
Measuring Disparity
16 versions - Latest release: over 1 year ago - 1 dependent package - 2 dependent repositories - 593 downloads last month - 23 stars on GitHub - 1 maintainer