Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

Top 3.6% on cran.r-project.org
Top 1.4% downloads on cran.r-project.org
Top 0.5% dependent packages on cran.r-project.org
Top 0.6% dependent repos on cran.r-project.org
Top 0.7% forks on cran.r-project.org

cran.r-project.org : vegan

Community Ecology Package

Registry - Source - Documentation - JSON
purl: pkg:cran/vegan
Keywords: ecological-modelling, ecology, ordination, r
License: GPL-2.0
Latest release: over 1 year ago
First release: over 22 years ago
Dependent packages: 202
Dependent repositories: 563
Downloads: 91,299 last month
Stars: 426 on GitHub
Forks: 94 on GitHub
Docker dependents: 35
Docker downloads: 39
Total Commits: 4572
Committers: 36
Average commits per author: 127.0
Development Distribution Score (DDS): 0.479
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: about 4 hours ago

abdiv 0.2.0
Alpha and Beta Diversity Measures
1 version - Latest release: over 4 years ago - 3 dependent repositories - 407 downloads last month - 9 stars on GitHub - 1 maintainer
Top 6.8% on cran.r-project.org
adegenet 2.1.10
Exploratory Analysis of Genetic and Genomic Data
43 versions - Latest release: over 1 year ago - 28 dependent packages - 83 dependent repositories - 9.3 thousand downloads last month - 164 stars on GitHub - 1 maintainer
Top 10.0% on cran.r-project.org
adespatial 0.3-23 removed
Multivariate Multiscale Spatial Analysis
25 versions - Latest release: 7 months ago - 4 dependent packages - 12 dependent repositories - 2.17 thousand downloads last month - 29 stars on GitHub - 1 maintainer
AICcPermanova 0.0.2
Model Selection of PERMANOVA Models Using AICc
2 versions - Latest release: about 1 year ago - 373 downloads last month - 0 stars on GitHub - 1 maintainer
AlleleShift 1.1-2 removed
Predict and Visualize Population-Level Changes in Allele Frequencies in Response to Climate Change
6 versions - Latest release: 7 months ago - 83 downloads last month - 1 maintainer
analogue 0.17-6
Analogue and Weighted Averaging Methods for Palaeoecology
29 versions - Latest release: almost 3 years ago - 4 dependent packages - 7 dependent repositories - 919 downloads last month - 14 stars on GitHub - 1 maintainer
aPCoA 1.3
Covariate Adjusted PCoA Plot
4 versions - Latest release: over 2 years ago - 314 downloads last month - 1 maintainer
Arothron 2.0.5
Geometric Morphometric Methods and Virtual Anthropology Tools
9 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 384 downloads last month - 1 maintainer
asbio 1.9-7 removed
A Collection of Statistical Tools for Biologists
52 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 1.77 thousand downloads last month - 1 maintainer
ausplotsR 2.0.5
TERN AusPlots Australian Ecosystem Monitoring Data
13 versions - Latest release: 6 months ago - 1 dependent repositories - 450 downloads last month - 1 maintainer
BAT 2.9.6
Biodiversity Assessment Tools
40 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 1.45 thousand downloads last month - 1 maintainer
BBI 0.3.0
Benthic Biotic Indices Calculation from Composition Data
2 versions - Latest release: over 5 years ago - 206 downloads last month - 1 stars on GitHub - 1 maintainer
bcp 4.0.3 removed
Bayesian Analysis of Change Point Problems
28 versions - Latest release: over 5 years ago - 3 dependent packages - 8 dependent repositories - 1.19 thousand downloads last month - 1 maintainer
Top 8.8% on cran.r-project.org
betapart 1.5.6
Partitioning Beta Diversity into Turnover and Nestedness Components
14 versions - Latest release: about 2 years ago - 5 dependent packages - 11 dependent repositories - 2.04 thousand downloads last month - 1 maintainer
betaper 1.1-2
Taxonomic Uncertainty on Multivariate Analyses of Ecological Data
4 versions - Latest release: over 3 years ago - 247 downloads last month - 1 maintainer
bingat 1.2.2
Binary Graph Analysis Tools
4 versions - Latest release: over 8 years ago - 224 downloads last month - 1 maintainer
BiodiversityR 1.4.2
Package for Community Ecology and Suitability Analysis
47 versions - Latest release: over 14 years ago - 2 dependent packages - 1 dependent repositories - 4.37 thousand downloads last month - 1 maintainer
biogeo 1.0 removed
Point Data Quality Assessment and Coordinate Conversion
1 version - Latest release: about 8 years ago - 1 dependent package - 1 dependent repositories - 451 downloads last month - 1 maintainer
biosampleR 1.0.4
Biodiversity Index Calculation and Bootstrap Confidence Interval Estimation
1 version - Latest release: 8 months ago - 193 downloads last month - 0 stars on GitHub - 1 maintainer
biosurvey 0.1.1 removed
Tools for Biological Survey Planning
2 versions - Latest release: over 2 years ago - 277 downloads last month - 7 stars on GitHub - 1 maintainer
Top 9.2% on cran.r-project.org
bipartite 2.19
Visualising Bipartite Networks and Calculating Some (Ecological) Indices
54 versions - Latest release: 5 months ago - 15 dependent packages - 31 dependent repositories - 3.69 thousand downloads last month - 35 stars on GitHub - 1 maintainer
bipartiteD3 0.3.0
Interactive Bipartite Graphs
3 versions - Latest release: over 2 years ago - 275 downloads last month - 1 maintainer
biplotbootGUI 1.3
Bootstrap on Classical Biplots and Clustering Disjoint Biplot
4 versions - Latest release: 5 months ago - 310 downloads last month - 1 maintainer
blender 0.1.2
Analyze biotic homogenization of landscapes
3 versions - Latest release: about 10 years ago - 196 downloads last month - 1 maintainer
canaper 1.0.1
Categorical Analysis of Neo- And Paleo-Endemism
2 versions - Latest release: about 1 year ago - 211 downloads last month - 6 stars on GitHub - 1 maintainer
cassandRa 0.1.0 removed
Finds Missing Links and Metric Confidence Intervals in Ecological Bipartite Networks
1 version - Latest release: almost 5 years ago - 154 downloads last month - 1 maintainer
cati 0.99.4
Community Assembly by Traits: Individuals and Beyond
7 versions - Latest release: about 2 years ago - 377 downloads last month - 10 stars on GitHub - 1 maintainer
chemodiv 0.3.0
Analysing Chemodiversity of Phytochemical Data
4 versions - Latest release: 9 months ago - 290 downloads last month - 2 stars on GitHub - 1 maintainer
cml 0.2.2
Conditional Manifold Learning
6 versions - Latest release: about 1 year ago - 230 downloads last month - 1 maintainer
CNVRG 1.0.0
Dirichlet Multinomial Modeling of Relative Abundance Data
3 versions - Latest release: over 2 years ago - 177 downloads last month - 1 maintainer
cocorresp 0.4-4
Co-Correspondence Analysis Methods
13 versions - Latest release: 3 months ago - 591 downloads last month - 4 stars on GitHub - 1 maintainer
codep 1.2-3
Multiscale Codependence Analysis
10 versions - Latest release: 25 days ago - 358 downloads last month - 1 maintainer
codyn 2.0.5
Community Dynamics Metrics
9 versions - Latest release: over 3 years ago - 1 dependent repositories - 410 downloads last month - 32 stars on GitHub - 1 maintainer
collpcm 1.4
Collapsed Latent Position Cluster Model for Social Networks
5 versions - Latest release: 18 days ago - 273 downloads last month - 1 maintainer
CommEcol 1.7.1 removed
Community Ecology Analyses
4 versions - Latest release: about 3 years ago - 255 downloads last month - 1 maintainer
CommunityCorrelogram 1.0 removed
Ecological Community Correlogram
1 version - Latest release: almost 10 years ago
comsimitv 0.1.5
Flexible Framework for Simulating Community Assembly
2 versions - Latest release: almost 3 years ago - 205 downloads last month - 1 maintainer
cwm 0.0.3 removed
Cluster Weighted Models by EM algorithm
2 versions - Latest release: over 10 years ago
DarkDiv 0.3.0
Estimating Dark Diversity and Site-Specific Species Pools
3 versions - Latest release: almost 4 years ago - 182 downloads last month - 1 maintainer
dartR 2.9.7
Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment...
17 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 1.46 thousand downloads last month - 29 stars on GitHub - 1 maintainer
dave 2.0 removed
Functions for "Data Analysis in Vegetation Ecology"
4 versions - Latest release: over 6 years ago - 1 dependent package - 339 downloads last month - 1 maintainer
Demerelate 0.9-3 removed
Functions to Calculate Relatedness on Diploid Genetic Data
6 versions - Latest release: about 7 years ago - 1 dependent package
diathor 0.1.0
Calculate Ecological Information and Diatom Based Indices
6 versions - Latest release: about 2 years ago - 309 downloads last month - 1 maintainer
Top 8.4% on cran.r-project.org
dimRed 0.2.6
A Framework for Dimensionality Reduction
9 versions - Latest release: almost 2 years ago - 3 dependent packages - 14 dependent repositories - 1.68 thousand downloads last month - 1 maintainer
dispRity 1.7.0
Measuring Disparity
16 versions - Latest release: almost 2 years ago - 1 dependent package - 2 dependent repositories - 726 downloads last month - 23 stars on GitHub - 1 maintainer
dissCqN 0.1.0
Multiple Assemblage Dissimilarity for Orders q = 0-N
1 version - Latest release: over 2 years ago - 201 downloads last month - 0 stars on GitHub - 1 maintainer
divDyn 0.8.2
Diversity Dynamics using Fossil Sampling Data
6 versions - Latest release: over 1 year ago - 2 dependent packages - 2 dependent repositories - 342 downloads last month - 10 stars on GitHub - 1 maintainer
DiversityOccupancy 1.0.6 removed
Building Diversity Models from Multiple Species Occupancy Models
7 versions - Latest release: about 7 years ago - 455 downloads last month - 1 maintainer
dynRB 0.18
Dynamic Range Boxes
15 versions - Latest release: over 1 year ago - 343 downloads last month - 1 maintainer
easyCODA 0.34.3
Compositional Data Analysis in Practice
5 versions - Latest release: over 3 years ago - 231 downloads last month - 31 stars on GitHub - 1 maintainer
ecan 0.2.1 removed
Ecological Analysis and Visualization
2 versions - Latest release: 10 months ago - 541 downloads last month - 0 stars on GitHub - 1 maintainer
EcoIndR 2.0
Ecological Indicators
10 versions - Latest release: 6 months ago - 320 downloads last month - 1 maintainer
ecolottery 1.0.0
Coalescent-Based Simulation of Ecological Communities
1 version - Latest release: almost 7 years ago - 543 downloads last month - 15 stars on GitHub - 1 maintainer
ecoregime 0.2.0
Analysis of Ecological Dynamic Regimes
3 versions - Latest release: 24 days ago - 248 downloads last month - 1 stars on GitHub - 1 maintainer
ecospace 1.4.2
Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks
7 versions - Latest release: almost 4 years ago - 263 downloads last month - 4 stars on GitHub - 1 maintainer
Top 7.9% on cran.r-project.org
ecospat 4.0.0
Spatial Ecology Miscellaneous Methods
16 versions - Latest release: 7 months ago - 8 dependent packages - 12 dependent repositories - 2.03 thousand downloads last month - 1 maintainer
ecostats 1.1.11
Code and Data Accompanying the Eco-Stats Text (Warton 2022)
4 versions - Latest release: over 1 year ago - 303 downloads last month - 1 maintainer
EcotoneFinder 0.2.3
Characterising and Locating Ecotones and Communities
2 versions - Latest release: about 3 years ago - 1 dependent repositories - 208 downloads last month - 1 maintainer
ecotraj 0.1.1
Ecological Trajectory Analysis
3 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 677 downloads last month - 3 stars on GitHub - 1 maintainer
edmcr 0.2.0
Euclidean Distance Matrix Completion Tools
2 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 307 downloads last month - 3 stars on GitHub - 1 maintainer
eHOF 1.5.9
Extended HOF (Huisman-Olff-Fresco) Models
18 versions - Latest release: almost 9 years ago - 444 downloads last month - 1 maintainer
entropart 1.4.1
Entropy Partitioning to Measure Diversity
26 versions - Latest release: over 8 years ago - 4 dependent packages - 11 dependent repositories - 747 downloads last month - 8 stars on GitHub - 1 maintainer
enveomics.R 1.9.1
Various Utilities for Microbial Genomics and Metagenomics
23 versions - Latest release: 3 months ago - 462 downloads last month - 1 maintainer
EvaluateCore 0.1.3 removed
Quality Evaluation of Core Collections
3 versions - Latest release: almost 2 years ago - 644 downloads last month - 0 stars on GitHub - 1 maintainer
evolqg 0.3-4
Evolutionary Quantitative Genetics
17 versions - Latest release: 5 months ago - 2 dependent packages - 2 dependent repositories - 373 downloads last month - 9 stars on GitHub - 1 maintainer
factorMerger 0.4.0 removed
The Merging Path Plot
6 versions - Latest release: almost 5 years ago - 2 dependent packages - 3 dependent repositories
FCPS 1.3.4
Fundamental Clustering Problems Suite
12 versions - Latest release: 7 months ago - 2 dependent packages - 2 dependent repositories - 948 downloads last month - 1 maintainer
fieldRS 0.2.3 removed
Remote Sensing Field Work Tools
5 versions - Latest release: almost 4 years ago - 12 stars on GitHub - 1 maintainer
forams 2.0-6
Foraminifera and Community Ecology Analyses
9 versions - Latest release: 9 months ago - 234 downloads last month - 1 maintainer
FreeSortR 1.3
Free Sorting Data Analysis
4 versions - Latest release: over 6 years ago - 187 downloads last month - 1 maintainer
fundiversity 1.1.1
Easy Computation of Functional Diversity Indices
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 410 downloads last month - 25 stars on GitHub - 1 maintainer
GABB 0.3.8
Facilitation of Data Preparation and Plotting Procedures for RDA and PCA Analyses
8 versions - Latest release: 3 months ago - 293 downloads last month - 1 maintainer
GCalignR 1.0.6
Simple Peak Alignment for Gas-Chromatography Data
7 versions - Latest release: 4 months ago - 350 downloads last month - 3 stars on GitHub - 1 maintainer
gdm 1.5.0
Generalized Dissimilarity Modeling
29 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 662 downloads last month - 28 stars on GitHub - 1 maintainer
Top 5.0% on cran.r-project.org
geomorph 4.0.7
Geometric Morphometric Analyses of 2D and 3D Landmark Data
44 versions - Latest release: 2 months ago - 11 dependent packages - 17 dependent repositories - 2.91 thousand downloads last month - 73 stars on GitHub - 1 maintainer
ggordiplots 0.4.3
Make 'ggplot2' Versions of Vegan's Ordiplots
2 versions - Latest release: 4 months ago - 564 downloads last month - 5 stars on GitHub - 1 maintainer
glmm.hp 0.1-2
Hierarchical Partitioning of Marginal R2 for Generalized Mixed-Effect Models
12 versions - Latest release: 4 months ago - 1.1 thousand downloads last month - 4 stars on GitHub - 1 maintainer
glottospace 0.0.112
Language Mapping and Geospatial Analysis of Linguistic and Cultural Data
3 versions - Latest release: about 2 years ago - 193 downloads last month - 18 stars on GitHub - 1 maintainer
GOCompare 1.0.2
Comprehensive GO Terms Comparison Between Species
4 versions - Latest release: over 1 year ago - 277 downloads last month - 9 stars on GitHub - 1 maintainer
goeveg 0.7.4
Functions for Community Data and Ordinations
13 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 1.55 thousand downloads last month - 4 stars on GitHub - 1 maintainer
graph4lg 1.8.0 removed
Build Graphs for Landscape Genetics Analysis
10 versions - Latest release: over 1 year ago - 1 dependent repositories - 461 downloads last month - 1 maintainer
grapherator 1.0.0
A Modular Multi-Step Graph Generator
1 version - Latest release: over 6 years ago - 1 dependent package - 1 dependent repositories - 150 downloads last month - 9 stars on GitHub - 1 maintainer
GRNNs 0.1.0
General Regression Neural Networks Package
1 version - Latest release: over 2 years ago - 143 downloads last month - 1 maintainer
GUniFrac 1.8
Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate M...
9 versions - Latest release: 8 months ago - 5 dependent packages - 17 dependent repositories - 1.58 thousand downloads last month - 1 maintainer
hagis 3.1.11
Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity
10 versions - Latest release: 8 months ago - 396 downloads last month - 5 stars on GitHub - 1 maintainer
HierDpart 1.5.0 removed
Partitioning Hierarchical Diversity and Differentiation Across Metrics and Scales, from Genes to ...
5 versions - Latest release: about 3 years ago - 3 stars on GitHub - 1 maintainer
hilldiv 1.5.1
Integral Analysis of Diversity Based on Hill Numbers
1 version - Latest release: over 4 years ago - 1 dependent repositories - 243 downloads last month - 7 stars on GitHub - 1 maintainer
HMP 2.0.1
Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
11 versions - Latest release: over 4 years ago - 1 dependent package - 1 dependent repositories - 353 downloads last month - 1 maintainer
HTSSIP 1.4.1
High Throughput Sequencing of Stable Isotope Probing Data Analysis
8 versions - Latest release: over 4 years ago - 1 dependent package - 1 dependent repositories - 298 downloads last month - 1 maintainer
iCAMP 1.5.12
Infer Community Assembly Mechanisms by Phylogenetic-Bin-Based Null Model Analysis
4 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 757 downloads last month - 58 stars on GitHub - 1 maintainer
idar 1.5
Individual Diversity-Area Relationships
6 versions - Latest release: over 1 year ago - 241 downloads last month - 1 maintainer
iDynoR 1.0 removed
R Analysis package for iDynoMiCS Simulation Results
1 version - Latest release: over 10 years ago
isopam 1.3.0 removed
Clustering of Sites with Species Data
12 versions - Latest release: 5 months ago - 1 dependent repositories - 326 downloads last month - 1 maintainer
Top 8.3% on cran.r-project.org
labdsv 2.1-0
Ordination and Multivariate Analysis for Ecology
13 versions - Latest release: about 1 year ago - 9 dependent packages - 19 dependent repositories - 2.52 thousand downloads last month - 1 maintainer
LDM 6.0.1
Testing Hypotheses About the Microbiome using the Linear Decomposition Model
2 versions - Latest release: 8 months ago - 180 downloads last month - 23 stars on GitHub - 1 maintainer
liayson 1.0.5 removed
Linking Singe-Cell Transcriptomes Atween Contemporary Subpopulation Genomes
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 181 downloads last month - 6 stars on GitHub - 1 maintainer
loe 1.1
Local Ordinal Embedding
2 versions - Latest release: about 8 years ago - 2 dependent packages - 9 dependent repositories - 1.15 thousand downloads last month - 1 maintainer
MapeBay 0.1.0 removed
Multivariate Analysis of Variance Panel, PERMANOVA and Bayesian
1 version - Latest release: over 2 years ago - 160 downloads last month - 1 maintainer
mcMST 1.1.1
A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem
3 versions - Latest release: about 1 year ago - 181 downloads last month - 3 stars on GitHub - 1 maintainer
MEclustnet 1.2.2
Fit the Mixture of Experts Latent Position Cluster Model to Network Data
5 versions - Latest release: over 4 years ago - 174 downloads last month - 1 maintainer