Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

Top 3.6% on cran.r-project.org
Top 1.4% downloads on cran.r-project.org
Top 0.5% dependent packages on cran.r-project.org
Top 0.6% dependent repos on cran.r-project.org
Top 0.7% forks on cran.r-project.org

cran.r-project.org : vegan

Community Ecology Package

Registry - Source - Documentation - JSON
purl: pkg:cran/vegan
Keywords: ecological-modelling, ecology, ordination, r
License: GPL-2.0
Latest release: over 1 year ago
First release: over 22 years ago
Dependent packages: 202
Dependent repositories: 563
Downloads: 91,299 last month
Stars: 426 on GitHub
Forks: 94 on GitHub
Docker dependents: 35
Docker downloads: 39
Total Commits: 4572
Committers: 36
Average commits per author: 127.0
Development Distribution Score (DDS): 0.479
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: about 4 hours ago

Top 1.2% on cran.r-project.org
tmap 3.3-4
Thematic Maps
29 versions - Latest release: 8 months ago - 56 dependent packages - 158 dependent repositories - 22.9 thousand downloads last month - 839 stars on GitHub - 1 maintainer
Top 2.8% on cran.r-project.org
mirt 1.38.1
Multidimensional Item Response Theory
68 versions - Latest release: about 1 year ago - 47 dependent packages - 52 dependent repositories - 6.86 thousand downloads last month - 193 stars on GitHub - 1 maintainer
Top 9.7% on cran.r-project.org
taxize 0.9.100
Taxonomic Information from Around the Web
46 versions - Latest release: about 2 years ago - 35 dependent packages - 91 dependent repositories - 25.6 thousand downloads last month - 1 maintainer
Top 8.0% on cran.r-project.org
permute 0.9-7
Functions for Generating Restricted Permutations of Data
11 versions - Latest release: over 2 years ago - 30 dependent packages - 69 dependent repositories - 66.1 thousand downloads last month - 22 stars on GitHub - 1 maintainer
Top 6.8% on cran.r-project.org
adegenet 2.1.10
Exploratory Analysis of Genetic and Genomic Data
43 versions - Latest release: over 1 year ago - 28 dependent packages - 83 dependent repositories - 9.3 thousand downloads last month - 164 stars on GitHub - 1 maintainer
Top 6.3% on cran.r-project.org
seriation 1.5.5
Infrastructure for Ordering Objects Using Seriation
49 versions - Latest release: 24 days ago - 28 dependent packages - 78 dependent repositories - 36.6 thousand downloads last month - 73 stars on GitHub - 1 maintainer
Top 6.6% on cran.r-project.org
vcfR 1.15.0
Manipulate and Visualize VCF Data
16 versions - Latest release: 5 months ago - 25 dependent packages - 55 dependent repositories - 7.25 thousand downloads last month - 231 stars on GitHub - 1 maintainer
Top 8.6% on cran.r-project.org
picante 1.8.2
Integrating Phylogenies and Ecology
28 versions - Latest release: almost 4 years ago - 24 dependent packages - 72 dependent repositories - 4.79 thousand downloads last month - 1 maintainer
Top 9.2% on cran.r-project.org
bipartite 2.19
Visualising Bipartite Networks and Calculating Some (Ecological) Indices
54 versions - Latest release: 5 months ago - 15 dependent packages - 31 dependent repositories - 3.69 thousand downloads last month - 35 stars on GitHub - 1 maintainer
yaImpute 1.0-34
Nearest Neighbor Observation Imputation and Evaluation Tools
34 versions - Latest release: 5 months ago - 12 dependent packages - 44 dependent repositories - 4.09 thousand downloads last month - 2 stars on GitHub - 1 maintainer
Top 8.9% on cran.r-project.org
TraMineR 2.2-9
Trajectory Miner: a Sequence Analysis Toolkit
47 versions - Latest release: 4 months ago - 12 dependent packages - 13 dependent repositories - 2.21 thousand downloads last month - 1 maintainer
Top 5.0% on cran.r-project.org
geomorph 4.0.7
Geometric Morphometric Analyses of 2D and 3D Landmark Data
44 versions - Latest release: 2 months ago - 11 dependent packages - 17 dependent repositories - 2.91 thousand downloads last month - 73 stars on GitHub - 1 maintainer
Top 8.3% on cran.r-project.org
labdsv 2.1-0
Ordination and Multivariate Analysis for Ecology
13 versions - Latest release: about 1 year ago - 9 dependent packages - 19 dependent repositories - 2.52 thousand downloads last month - 1 maintainer
Top 7.9% on cran.r-project.org
ecospat 4.0.0
Spatial Ecology Miscellaneous Methods
16 versions - Latest release: 7 months ago - 8 dependent packages - 12 dependent repositories - 2.03 thousand downloads last month - 1 maintainer
Top 9.7% on cran.r-project.org
poppr 2.9.6 💰
Genetic Analysis of Populations with Mixed Reproduction
42 versions - Latest release: about 2 months ago - 7 dependent packages - 13 dependent repositories - 6.16 thousand downloads last month - 67 stars on GitHub - 1 maintainer
WeightedCluster 1.0.1
Clustering of Weighted Data
9 versions - Latest release: over 10 years ago - 5 dependent packages - 2 dependent repositories - 674 downloads last month - 1 maintainer
GUniFrac 1.8
Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate M...
9 versions - Latest release: 8 months ago - 5 dependent packages - 17 dependent repositories - 1.58 thousand downloads last month - 1 maintainer
Top 8.8% on cran.r-project.org
betapart 1.5.6
Partitioning Beta Diversity into Turnover and Nestedness Components
14 versions - Latest release: about 2 years ago - 5 dependent packages - 11 dependent repositories - 2.04 thousand downloads last month - 1 maintainer
RVAideMemoire 0.9.1
Testing and Plotting Procedures for Biostatistics
58 versions - Latest release: about 13 years ago - 4 dependent packages - 1 dependent repositories - 11.5 thousand downloads last month - 1 maintainer
entropart 1.4.1
Entropy Partitioning to Measure Diversity
26 versions - Latest release: over 8 years ago - 4 dependent packages - 11 dependent repositories - 747 downloads last month - 8 stars on GitHub - 1 maintainer
ProjectionBasedClustering 1.2.1
Projection Based Clustering
15 versions - Latest release: 7 months ago - 4 dependent packages - 1 dependent repositories - 508 downloads last month - 1 maintainer
analogue 0.17-6
Analogue and Weighted Averaging Methods for Palaeoecology
29 versions - Latest release: almost 3 years ago - 4 dependent packages - 7 dependent repositories - 919 downloads last month - 14 stars on GitHub - 1 maintainer
Top 10.0% on cran.r-project.org
adespatial 0.3-23 removed
Multivariate Multiscale Spatial Analysis
25 versions - Latest release: 7 months ago - 4 dependent packages - 12 dependent repositories - 2.17 thousand downloads last month - 29 stars on GitHub - 1 maintainer
vegdata 0.9.12
Access Vegetation Databases and Treat Taxonomy
45 versions - Latest release: 3 months ago - 4 dependent packages - 5 dependent repositories - 624 downloads last month - 1 maintainer
rioja 1.0-6
Analysis of Quaternary Science Data
25 versions - Latest release: 7 months ago - 3 dependent packages - 9 dependent repositories - 1.32 thousand downloads last month - 10 stars on GitHub - 1 maintainer
Top 8.4% on cran.r-project.org
dimRed 0.2.6
A Framework for Dimensionality Reduction
9 versions - Latest release: almost 2 years ago - 3 dependent packages - 14 dependent repositories - 1.68 thousand downloads last month - 1 maintainer
microeco 1.6.0
Microbial Community Ecology Data Analysis
33 versions - Latest release: about 1 month ago - 3 dependent packages - 3 dependent repositories - 2.63 thousand downloads last month - 173 stars on GitHub - 1 maintainer
bcp 4.0.3 removed
Bayesian Analysis of Change Point Problems
28 versions - Latest release: over 5 years ago - 3 dependent packages - 8 dependent repositories - 1.19 thousand downloads last month - 1 maintainer
vegclust 2.0.2
Fuzzy Clustering of Vegetation Data
10 versions - Latest release: over 1 year ago - 3 dependent packages - 5 dependent repositories - 381 downloads last month - 2 stars on GitHub - 1 maintainer
propr 4.2.6 removed
Calculating Proportionality Between Vectors of Compositional Data
21 versions - Latest release: over 4 years ago - 2 dependent packages - 7 dependent repositories - 49 stars on GitHub
evolqg 0.3-4
Evolutionary Quantitative Genetics
17 versions - Latest release: 5 months ago - 2 dependent packages - 2 dependent repositories - 373 downloads last month - 9 stars on GitHub - 1 maintainer
factorMerger 0.4.0 removed
The Merging Path Plot
6 versions - Latest release: almost 5 years ago - 2 dependent packages - 3 dependent repositories
untb 1.7-7
Ecological Drift under the UNTB
21 versions - Latest release: 9 months ago - 2 dependent packages - 3 dependent repositories - 443 downloads last month - 3 stars on GitHub - 1 maintainer
PopGenReport 3.0.7
A Simple Framework to Analyse Population and Landscape Genetic Data
13 versions - Latest release: almost 2 years ago - 2 dependent packages - 5 dependent repositories - 1.31 thousand downloads last month - 5 stars on GitHub - 1 maintainer
vegan3d 1.3-0
Static and Dynamic 3D and Editable Interactive Plots for the 'vegan' Package
9 versions - Latest release: about 2 months ago - 2 dependent packages - 2 dependent repositories - 1.42 thousand downloads last month - 19 stars on GitHub - 1 maintainer
goeveg 0.7.4
Functions for Community Data and Ordinations
13 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 1.55 thousand downloads last month - 4 stars on GitHub - 1 maintainer
BAT 2.9.6
Biodiversity Assessment Tools
40 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 1.45 thousand downloads last month - 1 maintainer
phyloregion 1.0.8
Biogeographic Regionalization and Macroecology
4 versions - Latest release: 9 months ago - 2 dependent packages - 3 dependent repositories - 452 downloads last month - 16 stars on GitHub - 1 maintainer
asbio 1.9-7 removed
A Collection of Statistical Tools for Biologists
52 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 1.77 thousand downloads last month - 1 maintainer
divDyn 0.8.2
Diversity Dynamics using Fossil Sampling Data
6 versions - Latest release: over 1 year ago - 2 dependent packages - 2 dependent repositories - 342 downloads last month - 10 stars on GitHub - 1 maintainer
mefa 3.2-8
Multivariate Data Handling in Ecology and Biogeography
29 versions - Latest release: over 2 years ago - 2 dependent packages - 5 dependent repositories - 694 downloads last month - 1 stars on GitHub - 1 maintainer
loe 1.1
Local Ordinal Embedding
2 versions - Latest release: about 8 years ago - 2 dependent packages - 9 dependent repositories - 1.15 thousand downloads last month - 1 maintainer
BiodiversityR 1.4.2
Package for Community Ecology and Suitability Analysis
47 versions - Latest release: over 14 years ago - 2 dependent packages - 1 dependent repositories - 4.37 thousand downloads last month - 1 maintainer
FCPS 1.3.4
Fundamental Clustering Problems Suite
12 versions - Latest release: 7 months ago - 2 dependent packages - 2 dependent repositories - 948 downloads last month - 1 maintainer
iCAMP 1.5.12
Infer Community Assembly Mechanisms by Phylogenetic-Bin-Based Null Model Analysis
4 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 757 downloads last month - 58 stars on GitHub - 1 maintainer
biogeo 1.0 removed
Point Data Quality Assessment and Coordinate Conversion
1 version - Latest release: about 8 years ago - 1 dependent package - 1 dependent repositories - 451 downloads last month - 1 maintainer
spaa 0.2.2
SPecies Association Analysis
6 versions - Latest release: almost 8 years ago - 1 dependent package - 2 dependent repositories - 692 downloads last month - 12 stars on GitHub - 1 maintainer
Demerelate 0.9-3 removed
Functions to Calculate Relatedness on Diploid Genetic Data
6 versions - Latest release: about 7 years ago - 1 dependent package
gdm 1.5.0
Generalized Dissimilarity Modeling
29 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 662 downloads last month - 28 stars on GitHub - 1 maintainer
dispRity 1.7.0
Measuring Disparity
16 versions - Latest release: almost 2 years ago - 1 dependent package - 2 dependent repositories - 726 downloads last month - 23 stars on GitHub - 1 maintainer
edmcr 0.2.0
Euclidean Distance Matrix Completion Tools
2 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 307 downloads last month - 3 stars on GitHub - 1 maintainer
paco 0.4.2
Procrustes Application to Cophylogenetic Analysis
9 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 252 downloads last month - 1 maintainer
dartR 2.9.7
Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment...
17 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 1.46 thousand downloads last month - 29 stars on GitHub - 1 maintainer
dave 2.0 removed
Functions for "Data Analysis in Vegetation Ecology"
4 versions - Latest release: over 6 years ago - 1 dependent package - 339 downloads last month - 1 maintainer
grapherator 1.0.0
A Modular Multi-Step Graph Generator
1 version - Latest release: over 6 years ago - 1 dependent package - 1 dependent repositories - 150 downloads last month - 9 stars on GitHub - 1 maintainer
HTSSIP 1.4.1
High Throughput Sequencing of Stable Isotope Probing Data Analysis
8 versions - Latest release: over 4 years ago - 1 dependent package - 1 dependent repositories - 298 downloads last month - 1 maintainer
sharpshootR 1.8.4
A Soil Survey Toolkit
21 versions - Latest release: over 2 years ago - 1 dependent package - 4 dependent repositories - 844 downloads last month - 17 stars on GitHub - 1 maintainer
Rraven 1.0.13
Connecting R and 'Raven' Sound Analysis Software
14 versions - Latest release: about 3 years ago - 1 dependent package - 1 dependent repositories - 390 downloads last month - 7 stars on GitHub - 1 maintainer
provenance 4.3
Statistical Toolbox for Sedimentary Provenance Analysis
27 versions - Latest release: 7 days ago - 1 dependent package - 1 dependent repositories - 1 maintainer
Momocs 1.4.1
Morphometrics using R
19 versions - Latest release: 6 months ago - 1 dependent package - 3 dependent repositories - 608 downloads last month - 49 stars on GitHub - 1 maintainer
RVenn 1.1.0
Set Operations for Many Sets
2 versions - Latest release: almost 5 years ago - 1 dependent package - 2 dependent repositories - 364 downloads last month - 1 maintainer
otuSummary 0.1.2
Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rar...
3 versions - Latest release: 8 months ago - 1 dependent package - 1 dependent repositories - 302 downloads last month - 0 stars on GitHub - 1 maintainer
pez 1.2-4
Phylogenetics for the Environmental Sciences
9 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 518 downloads last month - 1 maintainer
metacom 1.5.3
Analysis of the 'Elements of Metacommunity Structure'
15 versions - Latest release: about 4 years ago - 1 dependent package - 1 dependent repositories - 364 downloads last month - 1 maintainer
ecotraj 0.1.1
Ecological Trajectory Analysis
3 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 677 downloads last month - 3 stars on GitHub - 1 maintainer
metacoder 0.3.7
Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data
13 versions - Latest release: 3 months ago - 1 dependent package - 4 dependent repositories - 1.04 thousand downloads last month - 2 stars on GitHub - 1 maintainer
HMP 2.0.1
Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
11 versions - Latest release: over 4 years ago - 1 dependent package - 1 dependent repositories - 353 downloads last month - 1 maintainer
SYNCSA 1.3.4
Analysis of Functional and Phylogenetic Patterns in Metacommunities
9 versions - Latest release: over 4 years ago - 1 dependent package - 3 dependent repositories - 338 downloads last month - 1 maintainer
primer 1.2.0
Functions and Data for the Book, a Primer of Ecology with R
5 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 813 downloads last month - 1 maintainer
Arothron 2.0.5
Geometric Morphometric Methods and Virtual Anthropology Tools
9 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 384 downloads last month - 1 maintainer
zetadiv 1.2.1
Functions to Compute Compositional Turnover Using Zeta Diversity
7 versions - Latest release: almost 2 years ago - 1 dependent repositories - 278 downloads last month - 1 maintainer
ecospace 1.4.2
Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks
7 versions - Latest release: almost 4 years ago - 263 downloads last month - 4 stars on GitHub - 1 maintainer
RTCC 0.1.1
Detecting Trait Clustering in Environmental Gradients
2 versions - Latest release: almost 4 years ago - 130 downloads last month - 1 maintainer
fieldRS 0.2.3 removed
Remote Sensing Field Work Tools
5 versions - Latest release: almost 4 years ago - 12 stars on GitHub - 1 maintainer
nodiv 1.4.2
Compares the Distribution of Sister Clades Through a Phylogeny
21 versions - Latest release: 9 months ago - 382 downloads last month - 2 stars on GitHub - 1 maintainer
SSP 1.0.1
Simulated Sampling Procedure for Community Ecology
1 version - Latest release: about 4 years ago - 1 dependent repositories - 161 downloads last month - 2 stars on GitHub - 1 maintainer
abdiv 0.2.0
Alpha and Beta Diversity Measures
1 version - Latest release: over 4 years ago - 3 dependent repositories - 407 downloads last month - 9 stars on GitHub - 1 maintainer
PCPS 1.0.7
Principal Coordinates of Phylogenetic Structure
8 versions - Latest release: over 4 years ago - 2 dependent repositories - 251 downloads last month - 1 maintainer
MEDITS 0.1.7 removed
Analysis of MEDITS-Like Survey Data
1 version - Latest release: over 4 years ago - 142 downloads last month - 1 maintainer
MEclustnet 1.2.2
Fit the Mixture of Experts Latent Position Cluster Model to Network Data
5 versions - Latest release: over 4 years ago - 174 downloads last month - 1 maintainer
hilldiv 1.5.1
Integral Analysis of Diversity Based on Hill Numbers
1 version - Latest release: over 4 years ago - 1 dependent repositories - 243 downloads last month - 7 stars on GitHub - 1 maintainer
biplotbootGUI 1.3
Bootstrap on Classical Biplots and Clustering Disjoint Biplot
4 versions - Latest release: 5 months ago - 310 downloads last month - 1 maintainer
segRDA 1.0.2
Modeling Non-Continuous Linear Responses of Ecological Data
1 version - Latest release: almost 5 years ago - 2 dependent repositories - 115 downloads last month - 2 stars on GitHub - 1 maintainer
cassandRa 0.1.0 removed
Finds Missing Links and Metric Confidence Intervals in Ecological Bipartite Networks
1 version - Latest release: almost 5 years ago - 154 downloads last month - 1 maintainer
palaeoSig 2.1-3 removed
Significance Tests for Palaeoenvironmental Reconstructions
7 versions - Latest release: about 1 year ago - 1 dependent repositories - 186 downloads last month - 3 stars on GitHub - 1 maintainer
spaceNet 1.0.1
Latent Space Models for Multidimensional Networks
3 versions - Latest release: about 6 years ago - 141 downloads last month - 1 maintainer
BBI 0.3.0
Benthic Biotic Indices Calculation from Composition Data
2 versions - Latest release: over 5 years ago - 206 downloads last month - 1 stars on GitHub - 1 maintainer
SparseLPM 1.0
The Sparse Latent Position Model for Nonnegative Interaction Data
1 version - Latest release: over 5 years ago - 110 downloads last month - 1 maintainer
sads 0.6.3
Maximum Likelihood Models for Species Abundance Distributions
11 versions - Latest release: 4 months ago - 6 dependent repositories - 698 downloads last month - 22 stars on GitHub - 1 maintainer
codep 1.2-3
Multiscale Codependence Analysis
10 versions - Latest release: 25 days ago - 358 downloads last month - 1 maintainer
RAM 1.2.1.7 removed
R for Amplicon-Sequencing-Based Microbial-Ecology
7 versions - Latest release: almost 6 years ago
soundecology 1.3.3
Soundscape Ecology
8 versions - Latest release: about 6 years ago - 2 dependent repositories - 489 downloads last month - 22 stars on GitHub - 1 maintainer
FreeSortR 1.3
Free Sorting Data Analysis
4 versions - Latest release: over 6 years ago - 187 downloads last month - 1 maintainer
phylotools 0.2.2
Phylogenetic Tools for Eco-Phylogenetics
5 versions - Latest release: over 6 years ago - 1 dependent repositories - 452 downloads last month - 10 stars on GitHub - 1 maintainer
mpmcorrelogram 0.1-4
Multivariate Partial Mantel Correlogram
5 versions - Latest release: over 6 years ago - 181 downloads last month - 1 maintainer
SigTree 1.10.6
Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree
10 versions - Latest release: over 6 years ago - 189 downloads last month - 1 maintainer
mcMST 1.1.1
A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem
3 versions - Latest release: about 1 year ago - 181 downloads last month - 3 stars on GitHub - 1 maintainer
bingat 1.2.2
Binary Graph Analysis Tools
4 versions - Latest release: over 8 years ago - 224 downloads last month - 1 maintainer
ecolottery 1.0.0
Coalescent-Based Simulation of Ecological Communities
1 version - Latest release: almost 7 years ago - 543 downloads last month - 15 stars on GitHub - 1 maintainer
netassoc 0.7.0
Inference of Species Associations from Co-Occurrence Data
7 versions - Latest release: almost 2 years ago - 173 downloads last month - 1 maintainer