Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
Top 1.4% downloads on cran.r-project.org
Top 0.5% dependent packages on cran.r-project.org
Top 0.6% dependent repos on cran.r-project.org
Top 0.7% forks on cran.r-project.org
cran.r-project.org : vegan
Community Ecology Package
Registry
-
Source
- Documentation
- JSON
purl: pkg:cran/vegan
Keywords: ecological-modelling, ecology, ordination, r
License: GPL-2.0
Latest release: over 1 year ago
First release: over 22 years ago
Dependent packages: 202
Dependent repositories: 563
Downloads: 91,299 last month
Stars: 426 on GitHub
Forks: 94 on GitHub
Docker dependents: 35
Docker downloads: 39
Total Commits: 4572
Committers: 36
Average commits per author: 127.0
Development Distribution Score (DDS): 0.479
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: 1 day ago
biosampleR 1.0.4
Biodiversity Index Calculation and Bootstrap Confidence Interval Estimation1 version - Latest release: 8 months ago - 193 downloads last month - 0 stars on GitHub - 1 maintainer
gdm 1.5.0
Generalized Dissimilarity Modeling29 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 662 downloads last month - 28 stars on GitHub - 1 maintainer
GUniFrac 1.8
Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate M...9 versions - Latest release: 8 months ago - 5 dependent packages - 17 dependent repositories - 1.58 thousand downloads last month - 1 maintainer
rdacca.hp 0.3.0
Hierarchical and Variation Partitioning for Canonical Analysis17 versions - Latest release: over 3 years ago - 1 dependent repositories - 736 downloads last month - 16 stars on GitHub - 1 maintainer
SoundShape 1.3.0
Sound Waves Onto Morphometric Data5 versions - Latest release: 9 months ago - 200 downloads last month - 9 stars on GitHub - 1 maintainer
Momocs 1.4.1
Morphometrics using R19 versions - Latest release: 6 months ago - 1 dependent package - 3 dependent repositories - 608 downloads last month - 49 stars on GitHub - 1 maintainer
entropart 1.4.1
Entropy Partitioning to Measure Diversity26 versions - Latest release: over 8 years ago - 4 dependent packages - 11 dependent repositories - 748 downloads last month - 8 stars on GitHub - 1 maintainer
adespatial 0.3-23 removed
Multivariate Multiscale Spatial Analysis25 versions - Latest release: 7 months ago - 4 dependent packages - 12 dependent repositories - 2.17 thousand downloads last month - 29 stars on GitHub - 1 maintainer
dartR 2.9.7
Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment...17 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 1.46 thousand downloads last month - 29 stars on GitHub - 1 maintainer
metrix 1.1.0
Water Quality Metrics Calculator2 versions - Latest release: over 1 year ago - 267 downloads last month - 1 maintainer
seriation 1.5.5
Infrastructure for Ordering Objects Using Seriation49 versions - Latest release: 25 days ago - 28 dependent packages - 78 dependent repositories - 38.4 thousand downloads last month - 74 stars on GitHub - 1 maintainer
SRS 0.2.3
Scaling with Ranked Subsampling7 versions - Latest release: about 2 years ago - 1 dependent repositories - 378 downloads last month - 1 maintainer
mirt 1.38.1
Multidimensional Item Response Theory68 versions - Latest release: about 1 year ago - 47 dependent packages - 52 dependent repositories - 6.86 thousand downloads last month - 193 stars on GitHub - 1 maintainer
microeco 1.6.0
Microbial Community Ecology Data Analysis33 versions - Latest release: about 1 month ago - 3 dependent packages - 3 dependent repositories - 2.63 thousand downloads last month - 173 stars on GitHub - 1 maintainer
diathor 0.1.0
Calculate Ecological Information and Diatom Based Indices6 versions - Latest release: about 2 years ago - 309 downloads last month - 1 maintainer
glottospace 0.0.112
Language Mapping and Geospatial Analysis of Linguistic and Cultural Data3 versions - Latest release: about 2 years ago - 193 downloads last month - 18 stars on GitHub - 1 maintainer
BAT 2.9.6
Biodiversity Assessment Tools40 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 1.45 thousand downloads last month - 1 maintainer
PolicyPortfolios 0.2.2
Tools for Managing, Measuring and Visualizing Policy Portfolios2 versions - Latest release: about 3 years ago - 166 downloads last month - 1 stars on GitHub - 1 maintainer
dimRed 0.2.6
A Framework for Dimensionality Reduction9 versions - Latest release: almost 2 years ago - 3 dependent packages - 14 dependent repositories - 1.68 thousand downloads last month - 1 maintainer
graph4lg 1.8.0 removed
Build Graphs for Landscape Genetics Analysis10 versions - Latest release: over 1 year ago - 1 dependent repositories - 461 downloads last month - 1 maintainer
geomorph 4.0.7
Geometric Morphometric Analyses of 2D and 3D Landmark Data44 versions - Latest release: 2 months ago - 11 dependent packages - 17 dependent repositories - 2.91 thousand downloads last month - 73 stars on GitHub - 1 maintainer
tmap 3.3-4
Thematic Maps29 versions - Latest release: 8 months ago - 56 dependent packages - 158 dependent repositories - 22.7 thousand downloads last month - 839 stars on GitHub - 1 maintainer
shipunov 1.17.1
Miscellaneous Functions from Alexey Shipunov19 versions - Latest release: over 1 year ago - 392 downloads last month - 1 maintainer
cati 0.99.4
Community Assembly by Traits: Individuals and Beyond7 versions - Latest release: about 2 years ago - 377 downloads last month - 10 stars on GitHub - 1 maintainer
tidypaleo 0.1.3
Tidy Tools for Paleoenvironmental Archives4 versions - Latest release: over 1 year ago - 309 downloads last month - 34 stars on GitHub - 1 maintainer
EcoIndR 2.0
Ecological Indicators10 versions - Latest release: 6 months ago - 320 downloads last month - 1 maintainer
memgene 1.0.2
Spatial Pattern Detection in Genetic Distance Data Using Moran's Eigenvector Maps4 versions - Latest release: about 2 years ago - 189 downloads last month - 1 maintainer
RVAideMemoire 0.9.1
Testing and Plotting Procedures for Biostatistics58 versions - Latest release: about 13 years ago - 4 dependent packages - 1 dependent repositories - 11.5 thousand downloads last month - 1 maintainer
idar 1.5
Individual Diversity-Area Relationships6 versions - Latest release: over 1 year ago - 241 downloads last month - 1 maintainer
cml 0.2.2
Conditional Manifold Learning6 versions - Latest release: about 1 year ago - 230 downloads last month - 1 maintainer
glmm.hp 0.1-2
Hierarchical Partitioning of Marginal R2 for Generalized Mixed-Effect Models12 versions - Latest release: 4 months ago - 1.1 thousand downloads last month - 4 stars on GitHub - 1 maintainer
MorphoTools2 0.9.1
Multivariate Morphometric Analysis7 versions - Latest release: over 2 years ago - 303 downloads last month - 5 stars on GitHub - 1 maintainer
pagoo 0.3.17
Analyze Bacterial Pangenomes in R with 'Pagoo'5 versions - Latest release: over 1 year ago - 1 dependent repositories - 255 downloads last month - 23 stars on GitHub - 1 maintainer
permute 0.9-7
Functions for Generating Restricted Permutations of Data11 versions - Latest release: over 2 years ago - 30 dependent packages - 69 dependent repositories - 66.1 thousand downloads last month - 22 stars on GitHub - 1 maintainer
Platypus 3.5.0
Single-Cell Immune Repertoire and Gene Expression Analysis5 versions - Latest release: 3 months ago - 312 downloads last month - 1 maintainer
dispRity 1.7.0
Measuring Disparity16 versions - Latest release: almost 2 years ago - 1 dependent package - 2 dependent repositories - 726 downloads last month - 23 stars on GitHub - 1 maintainer
eHOF 1.5.9
Extended HOF (Huisman-Olff-Fresco) Models18 versions - Latest release: almost 9 years ago - 444 downloads last month - 1 maintainer
RRphylo 2.8.0
Phylogenetic Ridge Regression Methods for Comparative Studies14 versions - Latest release: 11 months ago - 1 dependent repositories - 458 downloads last month - 1 maintainer
TraMineR 2.2-9
Trajectory Miner: a Sequence Analysis Toolkit47 versions - Latest release: 4 months ago - 12 dependent packages - 13 dependent repositories - 2.21 thousand downloads last month - 1 maintainer
mixKernel 0.9-1
Omics Data Integration Using Kernel Methods10 versions - Latest release: 4 months ago - 1 dependent repositories - 268 downloads last month - 1 maintainer
vegdata 0.9.12
Access Vegetation Databases and Treat Taxonomy45 versions - Latest release: 3 months ago - 4 dependent packages - 5 dependent repositories - 624 downloads last month - 1 maintainer
ecospat 4.0.0
Spatial Ecology Miscellaneous Methods16 versions - Latest release: 7 months ago - 8 dependent packages - 12 dependent repositories - 2.03 thousand downloads last month - 1 maintainer
BiodiversityR 1.4.2
Package for Community Ecology and Suitability Analysis47 versions - Latest release: over 14 years ago - 2 dependent packages - 1 dependent repositories - 4.37 thousand downloads last month - 1 maintainer
sharpshootR 1.8.4
A Soil Survey Toolkit21 versions - Latest release: over 2 years ago - 1 dependent package - 4 dependent repositories - 820 downloads last month - 17 stars on GitHub - 1 maintainer
patternize 0.0.5
Quantification of Color Pattern Variation5 versions - Latest release: 9 months ago - 282 downloads last month - 28 stars on GitHub - 1 maintainer
spmoran 0.2.3
Fast Spatial Regression using Moran Eigenvectors27 versions - Latest release: 4 months ago - 1 dependent repositories - 497 downloads last month - 1 maintainer
NicheBarcoding 1.0
Niche-model-Based Species Identification1 version - Latest release: over 2 years ago - 167 downloads last month - 0 stars on GitHub - 1 maintainer
mFD 1.0.7
Compute and Illustrate the Multiple Facets of Functional Diversity8 versions - Latest release: 3 months ago - 489 downloads last month - 19 stars on GitHub - 1 maintainer
aPCoA 1.3
Covariate Adjusted PCoA Plot4 versions - Latest release: over 2 years ago - 314 downloads last month - 1 maintainer
GOCompare 1.0.2
Comprehensive GO Terms Comparison Between Species4 versions - Latest release: over 1 year ago - 277 downloads last month - 9 stars on GitHub - 1 maintainer
ausplotsR 2.0.5
TERN AusPlots Australian Ecosystem Monitoring Data13 versions - Latest release: 6 months ago - 1 dependent repositories - 450 downloads last month - 1 maintainer
MapeBay 0.1.0 removed
Multivariate Analysis of Variance Panel, PERMANOVA and Bayesian1 version - Latest release: over 2 years ago - 160 downloads last month - 1 maintainer
asbio 1.9-7 removed
A Collection of Statistical Tools for Biologists52 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 1.77 thousand downloads last month - 1 maintainer
microbial 0.0.20
Do 16s Data Analysis and Generate Figures4 versions - Latest release: over 2 years ago - 250 downloads last month - 1 maintainer
bipartiteD3 0.3.0
Interactive Bipartite Graphs3 versions - Latest release: over 2 years ago - 275 downloads last month - 1 maintainer
naturaList 0.5.2
Classify Occurrences by Confidence Levels in the Species ID5 versions - Latest release: 3 months ago - 300 downloads last month - 0 stars on GitHub - 1 maintainer
dissCqN 0.1.0
Multiple Assemblage Dissimilarity for Orders q = 0-N1 version - Latest release: over 2 years ago - 201 downloads last month - 0 stars on GitHub - 1 maintainer
hagis 3.1.11
Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity10 versions - Latest release: 8 months ago - 396 downloads last month - 5 stars on GitHub - 1 maintainer
vegtable 0.1.8
Handling Vegetation Data Sets9 versions - Latest release: about 1 year ago - 2 dependent repositories - 279 downloads last month - 5 stars on GitHub - 1 maintainer
adegenet 2.1.10
Exploratory Analysis of Genetic and Genomic Data43 versions - Latest release: over 1 year ago - 28 dependent packages - 83 dependent repositories - 9.3 thousand downloads last month - 164 stars on GitHub - 1 maintainer
mefa 3.2-8
Multivariate Data Handling in Ecology and Biogeography29 versions - Latest release: over 2 years ago - 2 dependent packages - 5 dependent repositories - 694 downloads last month - 1 stars on GitHub - 1 maintainer
WeightedCluster 1.0.1
Clustering of Weighted Data9 versions - Latest release: over 10 years ago - 5 dependent packages - 2 dependent repositories - 674 downloads last month - 1 maintainer
Arothron 2.0.5
Geometric Morphometric Methods and Virtual Anthropology Tools9 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 384 downloads last month - 1 maintainer
MiRKAT 1.2.3
Microbiome Regression-Based Kernel Association Tests11 versions - Latest release: about 1 year ago - 3 dependent repositories - 359 downloads last month - 1 maintainer
fundiversity 1.1.1
Easy Computation of Functional Diversity Indices5 versions - Latest release: over 1 year ago - 1 dependent repositories - 410 downloads last month - 25 stars on GitHub - 1 maintainer
biosurvey 0.1.1 removed
Tools for Biological Survey Planning2 versions - Latest release: over 2 years ago - 277 downloads last month - 7 stars on GitHub - 1 maintainer
edmcr 0.2.0
Euclidean Distance Matrix Completion Tools2 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 307 downloads last month - 3 stars on GitHub - 1 maintainer
GRNNs 0.1.0
General Regression Neural Networks Package1 version - Latest release: over 2 years ago - 143 downloads last month - 1 maintainer
poppr 2.9.6 💰
Genetic Analysis of Populations with Mixed Reproduction42 versions - Latest release: about 2 months ago - 7 dependent packages - 13 dependent repositories - 6.16 thousand downloads last month - 67 stars on GitHub - 1 maintainer
CNVRG 1.0.0
Dirichlet Multinomial Modeling of Relative Abundance Data3 versions - Latest release: over 2 years ago - 177 downloads last month - 1 maintainer
AlleleShift 1.1-2 removed
Predict and Visualize Population-Level Changes in Allele Frequencies in Response to Climate Change6 versions - Latest release: 7 months ago - 83 downloads last month - 1 maintainer
netcom 2.1.6 removed
NETwork COMparison Inference4 versions - Latest release: almost 2 years ago - 159 downloads last month - 4 stars on GitHub - 1 maintainer
QFASA 1.2.0
Quantitative Fatty Acid Signature Analysis8 versions - Latest release: 6 months ago - 221 downloads last month - 1 maintainer
comsimitv 0.1.5
Flexible Framework for Simulating Community Assembly2 versions - Latest release: almost 3 years ago - 205 downloads last month - 1 maintainer
collpcm 1.4
Collapsed Latent Position Cluster Model for Social Networks5 versions - Latest release: 19 days ago - 273 downloads last month - 1 maintainer
FCPS 1.3.4
Fundamental Clustering Problems Suite12 versions - Latest release: 7 months ago - 2 dependent packages - 2 dependent repositories - 948 downloads last month - 1 maintainer
metacoder 0.3.7
Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data13 versions - Latest release: 3 months ago - 1 dependent package - 4 dependent repositories - 1.04 thousand downloads last month - 2 stars on GitHub - 1 maintainer
liayson 1.0.5 removed
Linking Singe-Cell Transcriptomes Atween Contemporary Subpopulation Genomes5 versions - Latest release: over 1 year ago - 1 dependent repositories - 181 downloads last month - 6 stars on GitHub - 1 maintainer
analogue 0.17-6
Analogue and Weighted Averaging Methods for Palaeoecology29 versions - Latest release: almost 3 years ago - 4 dependent packages - 7 dependent repositories - 919 downloads last month - 14 stars on GitHub - 1 maintainer
pez 1.2-4
Phylogenetics for the Environmental Sciences9 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 518 downloads last month - 1 maintainer
EvaluateCore 0.1.3 removed
Quality Evaluation of Core Collections3 versions - Latest release: almost 2 years ago - 644 downloads last month - 0 stars on GitHub - 1 maintainer
ecotraj 0.1.1
Ecological Trajectory Analysis3 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 677 downloads last month - 3 stars on GitHub - 1 maintainer
vegclust 2.0.2
Fuzzy Clustering of Vegetation Data10 versions - Latest release: over 1 year ago - 3 dependent packages - 5 dependent repositories - 381 downloads last month - 2 stars on GitHub - 1 maintainer
evolqg 0.3-4
Evolutionary Quantitative Genetics17 versions - Latest release: 5 months ago - 2 dependent packages - 2 dependent repositories - 373 downloads last month - 9 stars on GitHub - 1 maintainer
ProcMod 1.0.8
Informative Procrustean Matrix Correlation4 versions - Latest release: about 3 years ago - 160 downloads last month - 1 maintainer
dynRB 0.18
Dynamic Range Boxes15 versions - Latest release: over 1 year ago - 343 downloads last month - 1 maintainer
goeveg 0.7.4
Functions for Community Data and Ordinations13 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 1.55 thousand downloads last month - 4 stars on GitHub - 1 maintainer
cocorresp 0.4-4
Co-Correspondence Analysis Methods13 versions - Latest release: 3 months ago - 591 downloads last month - 4 stars on GitHub - 1 maintainer
provenance 4.3
Statistical Toolbox for Sedimentary Provenance Analysis27 versions - Latest release: 8 days ago - 1 dependent package - 1 dependent repositories - 1 maintainer
phyloregion 1.0.8
Biogeographic Regionalization and Macroecology4 versions - Latest release: 9 months ago - 2 dependent packages - 3 dependent repositories - 452 downloads last month - 16 stars on GitHub - 1 maintainer
Rraven 1.0.13
Connecting R and 'Raven' Sound Analysis Software14 versions - Latest release: about 3 years ago - 1 dependent package - 1 dependent repositories - 390 downloads last month - 7 stars on GitHub - 1 maintainer
RaceID 0.3.5
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from S...27 versions - Latest release: about 1 month ago - 1 dependent repositories - 636 downloads last month - 1 maintainer
HierDpart 1.5.0 removed
Partitioning Hierarchical Diversity and Differentiation Across Metrics and Scales, from Genes to ...5 versions - Latest release: about 3 years ago - 3 stars on GitHub - 1 maintainer
CommEcol 1.7.1 removed
Community Ecology Analyses4 versions - Latest release: about 3 years ago - 255 downloads last month - 1 maintainer
Rarefy 1.1.1 removed
Rarefaction Methods3 versions - Latest release: 10 months ago - 457 downloads last month - 1 maintainer
smartsnp 1.1.0
Fast Multivariate Analyses of Big Genomic Data1 version - Latest release: about 3 years ago - 1 dependent repositories - 242 downloads last month - 1 maintainer
divDyn 0.8.2
Diversity Dynamics using Fossil Sampling Data6 versions - Latest release: over 1 year ago - 2 dependent packages - 2 dependent repositories - 342 downloads last month - 10 stars on GitHub - 1 maintainer
EcotoneFinder 0.2.3
Characterising and Locating Ecotones and Communities2 versions - Latest release: about 3 years ago - 1 dependent repositories - 208 downloads last month - 1 maintainer
bipartite 2.19
Visualising Bipartite Networks and Calculating Some (Ecological) Indices54 versions - Latest release: 5 months ago - 15 dependent packages - 31 dependent repositories - 3.69 thousand downloads last month - 35 stars on GitHub - 1 maintainer
tapnet 0.3
Trait Matching and Abundance for Predicting Bipartite Networks1 version - Latest release: over 3 years ago - 164 downloads last month - 1 stars on GitHub - 1 maintainer