Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
Top 3.6% on cran.r-project.org
Top 1.4% downloads on cran.r-project.org
Top 0.5% dependent packages on cran.r-project.org
Top 0.6% dependent repos on cran.r-project.org
Top 0.7% forks on cran.r-project.org
Top 1.4% downloads on cran.r-project.org
Top 0.5% dependent packages on cran.r-project.org
Top 0.6% dependent repos on cran.r-project.org
Top 0.7% forks on cran.r-project.org
cran.r-project.org : vegan
Community Ecology Package
Registry
-
Source
- Documentation
- JSON
purl: pkg:cran/vegan
Keywords: ecological-modelling, ecology, ordination, r
License: GPL-2.0
Latest release: over 1 year ago
First release: over 22 years ago
Dependent packages: 202
Dependent repositories: 563
Downloads: 91,299 last month
Stars: 426 on GitHub
Forks: 94 on GitHub
Docker dependents: 35
Docker downloads: 39
Total Commits: 4572
Committers: 36
Average commits per author: 127.0
Development Distribution Score (DDS): 0.479
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: about 13 hours ago
Top 1.2% on cran.r-project.org
29 versions - Latest release: 8 months ago - 56 dependent packages - 158 dependent repositories - 22.9 thousand downloads last month - 839 stars on GitHub - 1 maintainer
tmap 3.3-4
Thematic Maps29 versions - Latest release: 8 months ago - 56 dependent packages - 158 dependent repositories - 22.9 thousand downloads last month - 839 stars on GitHub - 1 maintainer
SQMtools 1.6.3
Analyze Results Generated by the 'SqueezeMeta' Pipeline2 versions - Latest release: 8 months ago - 348 downloads last month - 340 stars on GitHub - 1 maintainer
Top 6.6% on cran.r-project.org
16 versions - Latest release: 5 months ago - 25 dependent packages - 55 dependent repositories - 7.25 thousand downloads last month - 231 stars on GitHub - 1 maintainer
vcfR 1.15.0
Manipulate and Visualize VCF Data16 versions - Latest release: 5 months ago - 25 dependent packages - 55 dependent repositories - 7.25 thousand downloads last month - 231 stars on GitHub - 1 maintainer
Top 2.8% on cran.r-project.org
68 versions - Latest release: about 1 year ago - 47 dependent packages - 52 dependent repositories - 6.86 thousand downloads last month - 193 stars on GitHub - 1 maintainer
mirt 1.38.1
Multidimensional Item Response Theory68 versions - Latest release: about 1 year ago - 47 dependent packages - 52 dependent repositories - 6.86 thousand downloads last month - 193 stars on GitHub - 1 maintainer
microeco 1.6.0
Microbial Community Ecology Data Analysis33 versions - Latest release: about 1 month ago - 3 dependent packages - 3 dependent repositories - 2.63 thousand downloads last month - 173 stars on GitHub - 1 maintainer
Top 6.8% on cran.r-project.org
43 versions - Latest release: over 1 year ago - 28 dependent packages - 83 dependent repositories - 9.3 thousand downloads last month - 164 stars on GitHub - 1 maintainer
adegenet 2.1.10
Exploratory Analysis of Genetic and Genomic Data43 versions - Latest release: over 1 year ago - 28 dependent packages - 83 dependent repositories - 9.3 thousand downloads last month - 164 stars on GitHub - 1 maintainer
Top 5.0% on cran.r-project.org
44 versions - Latest release: 2 months ago - 11 dependent packages - 17 dependent repositories - 2.91 thousand downloads last month - 73 stars on GitHub - 1 maintainer
geomorph 4.0.7
Geometric Morphometric Analyses of 2D and 3D Landmark Data44 versions - Latest release: 2 months ago - 11 dependent packages - 17 dependent repositories - 2.91 thousand downloads last month - 73 stars on GitHub - 1 maintainer
Top 6.3% on cran.r-project.org
49 versions - Latest release: 25 days ago - 28 dependent packages - 78 dependent repositories - 36.6 thousand downloads last month - 73 stars on GitHub - 1 maintainer
seriation 1.5.5
Infrastructure for Ordering Objects Using Seriation49 versions - Latest release: 25 days ago - 28 dependent packages - 78 dependent repositories - 36.6 thousand downloads last month - 73 stars on GitHub - 1 maintainer
Top 9.7% on cran.r-project.org
42 versions - Latest release: about 2 months ago - 7 dependent packages - 13 dependent repositories - 6.16 thousand downloads last month - 67 stars on GitHub - 1 maintainer
poppr 2.9.6 💰
Genetic Analysis of Populations with Mixed Reproduction42 versions - Latest release: about 2 months ago - 7 dependent packages - 13 dependent repositories - 6.16 thousand downloads last month - 67 stars on GitHub - 1 maintainer
iCAMP 1.5.12
Infer Community Assembly Mechanisms by Phylogenetic-Bin-Based Null Model Analysis4 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 757 downloads last month - 58 stars on GitHub - 1 maintainer
TOmicsVis 2.0.0
Transcriptome Visualization Process Scheme3 versions - Latest release: 9 months ago - 247 downloads last month - 56 stars on GitHub - 1 maintainer
Momocs 1.4.1
Morphometrics using R19 versions - Latest release: 6 months ago - 1 dependent package - 3 dependent repositories - 608 downloads last month - 49 stars on GitHub - 1 maintainer
propr 4.2.6 removed
Calculating Proportionality Between Vectors of Compositional Data21 versions - Latest release: over 4 years ago - 2 dependent packages - 7 dependent repositories - 49 stars on GitHub
Top 9.2% on cran.r-project.org
54 versions - Latest release: 5 months ago - 15 dependent packages - 31 dependent repositories - 3.69 thousand downloads last month - 35 stars on GitHub - 1 maintainer
bipartite 2.19
Visualising Bipartite Networks and Calculating Some (Ecological) Indices54 versions - Latest release: 5 months ago - 15 dependent packages - 31 dependent repositories - 3.69 thousand downloads last month - 35 stars on GitHub - 1 maintainer
tidypaleo 0.1.3
Tidy Tools for Paleoenvironmental Archives4 versions - Latest release: over 1 year ago - 309 downloads last month - 34 stars on GitHub - 1 maintainer
codyn 2.0.5
Community Dynamics Metrics9 versions - Latest release: over 3 years ago - 1 dependent repositories - 410 downloads last month - 32 stars on GitHub - 1 maintainer
easyCODA 0.34.3
Compositional Data Analysis in Practice5 versions - Latest release: over 3 years ago - 231 downloads last month - 31 stars on GitHub - 1 maintainer
Top 10.0% on cran.r-project.org
25 versions - Latest release: 7 months ago - 4 dependent packages - 12 dependent repositories - 2.17 thousand downloads last month - 29 stars on GitHub - 1 maintainer
adespatial 0.3-23 removed
Multivariate Multiscale Spatial Analysis25 versions - Latest release: 7 months ago - 4 dependent packages - 12 dependent repositories - 2.17 thousand downloads last month - 29 stars on GitHub - 1 maintainer
dartR 2.9.7
Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment...17 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 1.46 thousand downloads last month - 29 stars on GitHub - 1 maintainer
patternize 0.0.5
Quantification of Color Pattern Variation5 versions - Latest release: 9 months ago - 282 downloads last month - 28 stars on GitHub - 1 maintainer
gdm 1.5.0
Generalized Dissimilarity Modeling29 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 662 downloads last month - 28 stars on GitHub - 1 maintainer
fundiversity 1.1.1
Easy Computation of Functional Diversity Indices5 versions - Latest release: over 1 year ago - 1 dependent repositories - 410 downloads last month - 25 stars on GitHub - 1 maintainer
pagoo 0.3.17
Analyze Bacterial Pangenomes in R with 'Pagoo'5 versions - Latest release: over 1 year ago - 1 dependent repositories - 255 downloads last month - 23 stars on GitHub - 1 maintainer
dispRity 1.7.0
Measuring Disparity16 versions - Latest release: almost 2 years ago - 1 dependent package - 2 dependent repositories - 726 downloads last month - 23 stars on GitHub - 1 maintainer
LDM 6.0.1
Testing Hypotheses About the Microbiome using the Linear Decomposition Model2 versions - Latest release: 8 months ago - 180 downloads last month - 23 stars on GitHub - 1 maintainer
sads 0.6.3
Maximum Likelihood Models for Species Abundance Distributions11 versions - Latest release: 4 months ago - 6 dependent repositories - 698 downloads last month - 22 stars on GitHub - 1 maintainer
Top 8.0% on cran.r-project.org
11 versions - Latest release: over 2 years ago - 30 dependent packages - 69 dependent repositories - 66.1 thousand downloads last month - 22 stars on GitHub - 1 maintainer
permute 0.9-7
Functions for Generating Restricted Permutations of Data11 versions - Latest release: over 2 years ago - 30 dependent packages - 69 dependent repositories - 66.1 thousand downloads last month - 22 stars on GitHub - 1 maintainer
NST 3.1.10
Normalized Stochasticity Ratio6 versions - Latest release: almost 2 years ago - 561 downloads last month - 22 stars on GitHub - 1 maintainer
soundecology 1.3.3
Soundscape Ecology8 versions - Latest release: about 6 years ago - 2 dependent repositories - 489 downloads last month - 22 stars on GitHub - 1 maintainer
mFD 1.0.7
Compute and Illustrate the Multiple Facets of Functional Diversity8 versions - Latest release: 3 months ago - 489 downloads last month - 19 stars on GitHub - 1 maintainer
vegan3d 1.3-0
Static and Dynamic 3D and Editable Interactive Plots for the 'vegan' Package9 versions - Latest release: about 2 months ago - 2 dependent packages - 2 dependent repositories - 1.42 thousand downloads last month - 19 stars on GitHub - 1 maintainer
glottospace 0.0.112
Language Mapping and Geospatial Analysis of Linguistic and Cultural Data3 versions - Latest release: about 2 years ago - 193 downloads last month - 18 stars on GitHub - 1 maintainer
sharpshootR 1.8.4
A Soil Survey Toolkit21 versions - Latest release: over 2 years ago - 1 dependent package - 4 dependent repositories - 820 downloads last month - 17 stars on GitHub - 1 maintainer
ordr 0.1.1
A 'tidyverse' Extension for Ordinations and Biplots2 versions - Latest release: over 1 year ago - 2 dependent repositories - 180 downloads last month - 17 stars on GitHub - 1 maintainer
rdacca.hp 0.3.0
Hierarchical and Variation Partitioning for Canonical Analysis17 versions - Latest release: over 3 years ago - 1 dependent repositories - 736 downloads last month - 16 stars on GitHub - 1 maintainer
phyloregion 1.0.8
Biogeographic Regionalization and Macroecology4 versions - Latest release: 9 months ago - 2 dependent packages - 3 dependent repositories - 452 downloads last month - 16 stars on GitHub - 1 maintainer
ecolottery 1.0.0
Coalescent-Based Simulation of Ecological Communities1 version - Latest release: almost 7 years ago - 543 downloads last month - 15 stars on GitHub - 1 maintainer
analogue 0.17-6
Analogue and Weighted Averaging Methods for Palaeoecology29 versions - Latest release: almost 3 years ago - 4 dependent packages - 7 dependent repositories - 919 downloads last month - 14 stars on GitHub - 1 maintainer
spaa 0.2.2
SPecies Association Analysis6 versions - Latest release: almost 8 years ago - 1 dependent package - 2 dependent repositories - 692 downloads last month - 12 stars on GitHub - 1 maintainer
fieldRS 0.2.3 removed
Remote Sensing Field Work Tools5 versions - Latest release: almost 4 years ago - 12 stars on GitHub - 1 maintainer
restoptr 1.0.6
Ecological Restoration Planning7 versions - Latest release: 9 months ago - 713 downloads last month - 11 stars on GitHub - 1 maintainer
NADA2 1.1.6
Data Analysis for Censored Environmental Data10 versions - Latest release: 3 months ago - 1 dependent repositories - 430 downloads last month - 11 stars on GitHub - 1 maintainer
divDyn 0.8.2
Diversity Dynamics using Fossil Sampling Data6 versions - Latest release: over 1 year ago - 2 dependent packages - 2 dependent repositories - 342 downloads last month - 10 stars on GitHub - 1 maintainer
rioja 1.0-6
Analysis of Quaternary Science Data25 versions - Latest release: 7 months ago - 3 dependent packages - 9 dependent repositories - 1.32 thousand downloads last month - 10 stars on GitHub - 1 maintainer
phylotools 0.2.2
Phylogenetic Tools for Eco-Phylogenetics5 versions - Latest release: over 6 years ago - 1 dependent repositories - 452 downloads last month - 10 stars on GitHub - 1 maintainer
cati 0.99.4
Community Assembly by Traits: Individuals and Beyond7 versions - Latest release: about 2 years ago - 377 downloads last month - 10 stars on GitHub - 1 maintainer
GOCompare 1.0.2
Comprehensive GO Terms Comparison Between Species4 versions - Latest release: over 1 year ago - 277 downloads last month - 9 stars on GitHub - 1 maintainer
abdiv 0.2.0
Alpha and Beta Diversity Measures1 version - Latest release: over 4 years ago - 3 dependent repositories - 407 downloads last month - 9 stars on GitHub - 1 maintainer
SoundShape 1.3.0
Sound Waves Onto Morphometric Data5 versions - Latest release: 9 months ago - 200 downloads last month - 9 stars on GitHub - 1 maintainer
grapherator 1.0.0
A Modular Multi-Step Graph Generator1 version - Latest release: over 6 years ago - 1 dependent package - 1 dependent repositories - 150 downloads last month - 9 stars on GitHub - 1 maintainer
evolqg 0.3-4
Evolutionary Quantitative Genetics17 versions - Latest release: 5 months ago - 2 dependent packages - 2 dependent repositories - 373 downloads last month - 9 stars on GitHub - 1 maintainer
entropart 1.4.1
Entropy Partitioning to Measure Diversity26 versions - Latest release: over 8 years ago - 4 dependent packages - 11 dependent repositories - 748 downloads last month - 8 stars on GitHub - 1 maintainer
shapeR 1.0-1
Collection and Analysis of Otolith Shape Data3 versions - Latest release: over 1 year ago - 1 dependent repositories - 230 downloads last month - 8 stars on GitHub - 1 maintainer
Rraven 1.0.13
Connecting R and 'Raven' Sound Analysis Software14 versions - Latest release: about 3 years ago - 1 dependent package - 1 dependent repositories - 390 downloads last month - 7 stars on GitHub - 1 maintainer
raptr 1.0.1
Representative and Adequate Prioritization Toolkit in R13 versions - Latest release: 3 months ago - 821 downloads last month - 7 stars on GitHub - 1 maintainer
biosurvey 0.1.1 removed
Tools for Biological Survey Planning2 versions - Latest release: over 2 years ago - 277 downloads last month - 7 stars on GitHub - 1 maintainer
hilldiv 1.5.1
Integral Analysis of Diversity Based on Hill Numbers1 version - Latest release: over 4 years ago - 1 dependent repositories - 243 downloads last month - 7 stars on GitHub - 1 maintainer
liayson 1.0.5 removed
Linking Singe-Cell Transcriptomes Atween Contemporary Subpopulation Genomes5 versions - Latest release: over 1 year ago - 1 dependent repositories - 181 downloads last month - 6 stars on GitHub - 1 maintainer
canaper 1.0.1
Categorical Analysis of Neo- And Paleo-Endemism2 versions - Latest release: about 1 year ago - 211 downloads last month - 6 stars on GitHub - 1 maintainer
vegtable 0.1.8
Handling Vegetation Data Sets9 versions - Latest release: about 1 year ago - 2 dependent repositories - 279 downloads last month - 5 stars on GitHub - 1 maintainer
supportR 1.3.0
Support Functions for Wrangling and Visualization4 versions - Latest release: 30 days ago - 358 downloads last month - 5 stars on GitHub - 1 maintainer
hagis 3.1.11
Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity10 versions - Latest release: 8 months ago - 396 downloads last month - 5 stars on GitHub - 1 maintainer
ggordiplots 0.4.3
Make 'ggplot2' Versions of Vegan's Ordiplots2 versions - Latest release: 4 months ago - 564 downloads last month - 5 stars on GitHub - 1 maintainer
tspmeta 1.2
Instance Feature Calculation and Evolutionary Instance Generation for the Traveling Salesman Problem3 versions - Latest release: almost 9 years ago - 1 dependent repositories - 142 downloads last month - 5 stars on GitHub - 1 maintainer
MorphoTools2 0.9.1
Multivariate Morphometric Analysis7 versions - Latest release: over 2 years ago - 303 downloads last month - 5 stars on GitHub - 1 maintainer
PopGenReport 3.0.7
A Simple Framework to Analyse Population and Landscape Genetic Data13 versions - Latest release: almost 2 years ago - 2 dependent packages - 5 dependent repositories - 1.31 thousand downloads last month - 5 stars on GitHub - 1 maintainer
glmm.hp 0.1-2
Hierarchical Partitioning of Marginal R2 for Generalized Mixed-Effect Models12 versions - Latest release: 4 months ago - 1.1 thousand downloads last month - 4 stars on GitHub - 1 maintainer
netcom 2.1.6 removed
NETwork COMparison Inference4 versions - Latest release: almost 2 years ago - 159 downloads last month - 4 stars on GitHub - 1 maintainer
ecospace 1.4.2
Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks7 versions - Latest release: almost 4 years ago - 263 downloads last month - 4 stars on GitHub - 1 maintainer
goeveg 0.7.4
Functions for Community Data and Ordinations13 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 1.55 thousand downloads last month - 4 stars on GitHub - 1 maintainer
cocorresp 0.4-4
Co-Correspondence Analysis Methods13 versions - Latest release: 3 months ago - 591 downloads last month - 4 stars on GitHub - 1 maintainer
ecotraj 0.1.1
Ecological Trajectory Analysis3 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 677 downloads last month - 3 stars on GitHub - 1 maintainer
mcMST 1.1.1
A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem3 versions - Latest release: about 1 year ago - 181 downloads last month - 3 stars on GitHub - 1 maintainer
GCalignR 1.0.6
Simple Peak Alignment for Gas-Chromatography Data7 versions - Latest release: 4 months ago - 350 downloads last month - 3 stars on GitHub - 1 maintainer
recluster 2.9
Ordination Methods for the Analysis of Beta-Diversity Indices8 versions - Latest release: almost 4 years ago - 1 dependent repositories - 574 downloads last month - 3 stars on GitHub - 1 maintainer
HierDpart 1.5.0 removed
Partitioning Hierarchical Diversity and Differentiation Across Metrics and Scales, from Genes to ...5 versions - Latest release: about 3 years ago - 3 stars on GitHub - 1 maintainer
edmcr 0.2.0
Euclidean Distance Matrix Completion Tools2 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 307 downloads last month - 3 stars on GitHub - 1 maintainer
palaeoSig 2.1-3 removed
Significance Tests for Palaeoenvironmental Reconstructions7 versions - Latest release: about 1 year ago - 1 dependent repositories - 186 downloads last month - 3 stars on GitHub - 1 maintainer
untb 1.7-7
Ecological Drift under the UNTB21 versions - Latest release: 9 months ago - 2 dependent packages - 3 dependent repositories - 443 downloads last month - 3 stars on GitHub - 1 maintainer
surveyvoi 1.0.6
Survey Value of Information5 versions - Latest release: 3 months ago - 642 downloads last month - 2 stars on GitHub - 1 maintainer
nodiv 1.4.2
Compares the Distribution of Sister Clades Through a Phylogeny21 versions - Latest release: 9 months ago - 382 downloads last month - 2 stars on GitHub - 1 maintainer
SSP 1.0.1
Simulated Sampling Procedure for Community Ecology1 version - Latest release: about 4 years ago - 1 dependent repositories - 161 downloads last month - 2 stars on GitHub - 1 maintainer
yaImpute 1.0-34
Nearest Neighbor Observation Imputation and Evaluation Tools34 versions - Latest release: 5 months ago - 12 dependent packages - 44 dependent repositories - 4.09 thousand downloads last month - 2 stars on GitHub - 1 maintainer
segRDA 1.0.2
Modeling Non-Continuous Linear Responses of Ecological Data1 version - Latest release: almost 5 years ago - 2 dependent repositories - 115 downloads last month - 2 stars on GitHub - 1 maintainer
metacoder 0.3.7
Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data13 versions - Latest release: 3 months ago - 1 dependent package - 4 dependent repositories - 1.04 thousand downloads last month - 2 stars on GitHub - 1 maintainer
vegclust 2.0.2
Fuzzy Clustering of Vegetation Data10 versions - Latest release: over 1 year ago - 3 dependent packages - 5 dependent repositories - 381 downloads last month - 2 stars on GitHub - 1 maintainer
chemodiv 0.3.0
Analysing Chemodiversity of Phytochemical Data4 versions - Latest release: 9 months ago - 290 downloads last month - 2 stars on GitHub - 1 maintainer
mefa 3.2-8
Multivariate Data Handling in Ecology and Biogeography29 versions - Latest release: over 2 years ago - 2 dependent packages - 5 dependent repositories - 694 downloads last month - 1 stars on GitHub - 1 maintainer
ecoregime 0.2.0
Analysis of Ecological Dynamic Regimes3 versions - Latest release: 25 days ago - 248 downloads last month - 1 stars on GitHub - 1 maintainer
PolicyPortfolios 0.2.2
Tools for Managing, Measuring and Visualizing Policy Portfolios2 versions - Latest release: about 3 years ago - 166 downloads last month - 1 stars on GitHub - 1 maintainer
BBI 0.3.0
Benthic Biotic Indices Calculation from Composition Data2 versions - Latest release: over 5 years ago - 206 downloads last month - 1 stars on GitHub - 1 maintainer
tapnet 0.3
Trait Matching and Abundance for Predicting Bipartite Networks1 version - Latest release: over 3 years ago - 120 downloads last month - 1 stars on GitHub - 1 maintainer
otuSummary 0.1.2
Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rar...3 versions - Latest release: 8 months ago - 1 dependent package - 1 dependent repositories - 302 downloads last month - 0 stars on GitHub - 1 maintainer
dissCqN 0.1.0
Multiple Assemblage Dissimilarity for Orders q = 0-N1 version - Latest release: over 2 years ago - 201 downloads last month - 0 stars on GitHub - 1 maintainer
naturaList 0.5.2
Classify Occurrences by Confidence Levels in the Species ID5 versions - Latest release: 3 months ago - 300 downloads last month - 0 stars on GitHub - 1 maintainer
biosampleR 1.0.4
Biodiversity Index Calculation and Bootstrap Confidence Interval Estimation1 version - Latest release: 8 months ago - 193 downloads last month - 0 stars on GitHub - 1 maintainer
NicheBarcoding 1.0
Niche-model-Based Species Identification1 version - Latest release: over 2 years ago - 167 downloads last month - 0 stars on GitHub - 1 maintainer
EvaluateCore 0.1.3 removed
Quality Evaluation of Core Collections3 versions - Latest release: almost 2 years ago - 644 downloads last month - 0 stars on GitHub - 1 maintainer
ecan 0.2.1 removed
Ecological Analysis and Visualization2 versions - Latest release: 10 months ago - 541 downloads last month - 0 stars on GitHub - 1 maintainer
AICcPermanova 0.0.2
Model Selection of PERMANOVA Models Using AICc2 versions - Latest release: about 1 year ago - 373 downloads last month - 0 stars on GitHub - 1 maintainer