Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

Top 3.6% on cran.r-project.org
Top 1.4% downloads on cran.r-project.org
Top 0.5% dependent packages on cran.r-project.org
Top 0.6% dependent repos on cran.r-project.org
Top 0.7% forks on cran.r-project.org

cran.r-project.org : vegan

Community Ecology Package

Registry - Source - Documentation - JSON
purl: pkg:cran/vegan
Keywords: ecological-modelling, ecology, ordination, r
License: GPL-2.0
Latest release: 11 days ago
First release: over 22 years ago
Dependent packages: 218
Dependent repositories: 563
Downloads: 100,467 last month
Stars: 428 on GitHub
Forks: 95 on GitHub
Docker dependents: 148
Docker downloads: 966,380
Total Commits: 4572
Committers: 36
Average commits per author: 127.0
Development Distribution Score (DDS): 0.479
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: 2 days ago

stops 1.0-1
Structure Optimized Proximity Scaling
1 version - Latest release: over 1 year ago - 371 downloads last month - 1 maintainer
tidypaleo 0.1.3
Tidy Tools for Paleoenvironmental Archives
4 versions - Latest release: over 1 year ago - 414 downloads last month - 34 stars on GitHub - 1 maintainer
idar 1.5
Individual Diversity-Area Relationships
6 versions - Latest release: over 1 year ago - 315 downloads last month - 1 maintainer
dynRB 0.18
Dynamic Range Boxes
15 versions - Latest release: over 1 year ago - 461 downloads last month - 1 maintainer
fundiversity 1.1.1
Easy Computation of Functional Diversity Indices
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 410 downloads last month - 25 stars on GitHub - 1 maintainer
shapeR 1.0-1
Collection and Analysis of Otolith Shape Data
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 290 downloads last month - 9 stars on GitHub - 1 maintainer
pagoo 0.3.17
Analyze Bacterial Pangenomes in R with 'Pagoo'
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 255 downloads last month - 23 stars on GitHub - 1 maintainer
metrix 1.1.0
Water Quality Metrics Calculator
2 versions - Latest release: over 1 year ago - 310 downloads last month - 1 maintainer
GOCompare 1.0.2
Comprehensive GO Terms Comparison Between Species
4 versions - Latest release: over 1 year ago - 277 downloads last month - 9 stars on GitHub - 1 maintainer
ordr 0.1.1
A 'tidyverse' Extension for Ordinations and Biplots
2 versions - Latest release: over 1 year ago - 2 dependent repositories - 274 downloads last month - 17 stars on GitHub - 1 maintainer
liayson 1.0.5 removed
Linking Singe-Cell Transcriptomes Atween Contemporary Subpopulation Genomes
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 181 downloads last month - 6 stars on GitHub - 1 maintainer
Rtapas 1.1 removed
Random Tanglegram Partitions
3 versions - Latest release: over 1 year ago - 312 downloads last month - 1 maintainer
divDyn 0.8.2
Diversity Dynamics using Fossil Sampling Data
6 versions - Latest release: over 1 year ago - 3 dependent packages - 2 dependent repositories - 506 downloads last month - 10 stars on GitHub - 1 maintainer
pez 1.2-4
Phylogenetics for the Environmental Sciences
9 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 622 downloads last month - 1 maintainer
vegclust 2.0.2
Fuzzy Clustering of Vegetation Data
10 versions - Latest release: over 1 year ago - 3 dependent packages - 5 dependent repositories - 381 downloads last month - 2 stars on GitHub - 1 maintainer
ecostats 1.1.11
Code and Data Accompanying the Eco-Stats Text (Warton 2022)
4 versions - Latest release: over 1 year ago - 385 downloads last month - 1 maintainer
dispRity 1.7.0
Measuring Disparity
16 versions - Latest release: almost 2 years ago - 1 dependent package - 2 dependent repositories - 699 downloads last month - 23 stars on GitHub - 1 maintainer
netcom 2.1.6 removed
NETwork COMparison Inference
4 versions - Latest release: almost 2 years ago - 159 downloads last month - 4 stars on GitHub - 1 maintainer
netassoc 0.7.0
Inference of Species Associations from Co-Occurrence Data
7 versions - Latest release: almost 2 years ago - 253 downloads last month - 1 maintainer
Top 8.4% on cran.r-project.org
dimRed 0.2.6
A Framework for Dimensionality Reduction
9 versions - Latest release: almost 2 years ago - 3 dependent packages - 14 dependent repositories - 1.68 thousand downloads last month - 1 maintainer
EvaluateCore 0.1.3 removed
Quality Evaluation of Core Collections
3 versions - Latest release: almost 2 years ago - 644 downloads last month - 0 stars on GitHub - 1 maintainer
zetadiv 1.2.1
Functions to Compute Compositional Turnover Using Zeta Diversity
7 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 356 downloads last month - 1 maintainer
rareNMtests 1.2
Ecological and Biogeographical Null Model Tests for Comparing Rarefaction Curves
3 versions - Latest release: almost 2 years ago - 245 downloads last month - 1 maintainer
NST 3.1.10
Normalized Stochasticity Ratio
6 versions - Latest release: almost 2 years ago - 1 dependent package - 558 downloads last month - 24 stars on GitHub - 1 maintainer
iCAMP 1.5.12
Infer Community Assembly Mechanisms by Phylogenetic-Bin-Based Null Model Analysis
4 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 757 downloads last month - 58 stars on GitHub - 1 maintainer
PopGenReport 3.0.7
A Simple Framework to Analyse Population and Landscape Genetic Data
13 versions - Latest release: almost 2 years ago - 2 dependent packages - 5 dependent repositories - 1.31 thousand downloads last month - 5 stars on GitHub - 1 maintainer
Top 9.7% on cran.r-project.org
taxize 0.9.100
Taxonomic Information from Around the Web
46 versions - Latest release: about 2 years ago - 35 dependent packages - 91 dependent repositories - 15.4 thousand downloads last month - 1 maintainer
glottospace 0.0.112
Language Mapping and Geospatial Analysis of Linguistic and Cultural Data
3 versions - Latest release: about 2 years ago - 262 downloads last month - 18 stars on GitHub - 1 maintainer
Top 8.8% on cran.r-project.org
betapart 1.5.6
Partitioning Beta Diversity into Turnover and Nestedness Components
14 versions - Latest release: about 2 years ago - 6 dependent packages - 11 dependent repositories - 2 thousand downloads last month - 1 maintainer
SRS 0.2.3
Scaling with Ranked Subsampling
7 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 444 downloads last month - 1 maintainer
diathor 0.1.0
Calculate Ecological Information and Diatom Based Indices
6 versions - Latest release: about 2 years ago - 373 downloads last month - 1 maintainer
cati 0.99.4
Community Assembly by Traits: Individuals and Beyond
7 versions - Latest release: about 2 years ago - 489 downloads last month - 10 stars on GitHub - 1 maintainer
memgene 1.0.2
Spatial Pattern Detection in Genetic Distance Data Using Moran's Eigenvector Maps
4 versions - Latest release: over 2 years ago - 243 downloads last month - 1 maintainer
Top 8.0% on cran.r-project.org
permute 0.9-7
Functions for Generating Restricted Permutations of Data
11 versions - Latest release: over 2 years ago - 32 dependent packages - 69 dependent repositories - 71.2 thousand downloads last month - 23 stars on GitHub - 1 maintainer
sharpshootR 1.8.4
A Soil Survey Toolkit
21 versions - Latest release: over 2 years ago - 1 dependent package - 4 dependent repositories - 659 downloads last month - 17 stars on GitHub - 1 maintainer
NicheBarcoding 1.0
Niche-model-Based Species Identification
1 version - Latest release: over 2 years ago - 221 downloads last month - 0 stars on GitHub - 1 maintainer
aPCoA 1.3
Covariate Adjusted PCoA Plot
4 versions - Latest release: over 2 years ago - 366 downloads last month - 1 maintainer
MorphoTools2 0.9.1
Multivariate Morphometric Analysis
7 versions - Latest release: over 2 years ago - 447 downloads last month - 5 stars on GitHub - 1 maintainer
gdm 1.5.0
Generalized Dissimilarity Modeling
29 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 848 downloads last month - 28 stars on GitHub - 1 maintainer
MapeBay 0.1.0 removed
Multivariate Analysis of Variance Panel, PERMANOVA and Bayesian
1 version - Latest release: over 2 years ago - 160 downloads last month - 1 maintainer
bipartiteD3 0.3.0
Interactive Bipartite Graphs
3 versions - Latest release: over 2 years ago - 344 downloads last month - 1 maintainer
dissCqN 0.1.0
Multiple Assemblage Dissimilarity for Orders q = 0-N
1 version - Latest release: over 2 years ago - 263 downloads last month - 0 stars on GitHub - 1 maintainer
mefa 3.2-8
Multivariate Data Handling in Ecology and Biogeography
30 versions - Latest release: over 2 years ago - 2 dependent packages - 5 dependent repositories - 764 downloads last month - 2 stars on GitHub - 1 maintainer
biosurvey 0.1.1 removed
Tools for Biological Survey Planning
2 versions - Latest release: over 2 years ago - 277 downloads last month - 7 stars on GitHub - 1 maintainer
edmcr 0.2.0
Euclidean Distance Matrix Completion Tools
2 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 307 downloads last month - 3 stars on GitHub - 1 maintainer
GRNNs 0.1.0
General Regression Neural Networks Package
1 version - Latest release: over 2 years ago - 180 downloads last month - 1 maintainer
CNVRG 1.0.0
Dirichlet Multinomial Modeling of Relative Abundance Data
3 versions - Latest release: over 2 years ago - 237 downloads last month - 1 maintainer
comsimitv 0.1.5
Flexible Framework for Simulating Community Assembly
2 versions - Latest release: almost 3 years ago - 261 downloads last month - 1 maintainer
analogue 0.17-6
Analogue and Weighted Averaging Methods for Palaeoecology
29 versions - Latest release: almost 3 years ago - 4 dependent packages - 7 dependent repositories - 919 downloads last month - 14 stars on GitHub - 1 maintainer
ProcMod 1.0.8
Informative Procrustean Matrix Correlation
4 versions - Latest release: about 3 years ago - 196 downloads last month - 1 maintainer
Rraven 1.0.13
Connecting R and 'Raven' Sound Analysis Software
14 versions - Latest release: about 3 years ago - 1 dependent package - 1 dependent repositories - 627 downloads last month - 7 stars on GitHub - 1 maintainer
HierDpart 1.5.0 removed
Partitioning Hierarchical Diversity and Differentiation Across Metrics and Scales, from Genes to ...
5 versions - Latest release: about 3 years ago - 3 stars on GitHub - 1 maintainer
CommEcol 1.7.1 removed
Community Ecology Analyses
4 versions - Latest release: about 3 years ago - 255 downloads last month - 1 maintainer
smartsnp 1.1.0
Fast Multivariate Analyses of Big Genomic Data
1 version - Latest release: about 3 years ago - 1 dependent repositories - 339 downloads last month - 1 maintainer
PolicyPortfolios 0.2.2
Tools for Managing, Measuring and Visualizing Policy Portfolios
2 versions - Latest release: about 3 years ago - 242 downloads last month - 1 stars on GitHub - 1 maintainer
EcotoneFinder 0.2.3
Characterising and Locating Ecotones and Communities
2 versions - Latest release: over 3 years ago - 1 dependent repositories - 296 downloads last month - 1 maintainer
tapnet 0.3
Trait Matching and Abundance for Predicting Bipartite Networks
1 version - Latest release: over 3 years ago - 164 downloads last month - 1 stars on GitHub - 1 maintainer
rdacca.hp 0.3.0
Hierarchical and Variation Partitioning for Canonical Analysis
17 versions - Latest release: over 3 years ago - 1 dependent repositories - 736 downloads last month - 16 stars on GitHub - 1 maintainer
node2vec 0.1.0
Algorithmic Framework for Representational Learning on Graphs
1 version - Latest release: over 3 years ago - 292 downloads last month - 1 maintainer
primer 1.2.0
Functions and Data for the Book, a Primer of Ecology with R
5 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 736 downloads last month - 1 maintainer
codyn 2.0.5
Community Dynamics Metrics
9 versions - Latest release: over 3 years ago - 1 dependent repositories - 410 downloads last month - 32 stars on GitHub - 1 maintainer
betaper 1.1-2
Taxonomic Uncertainty on Multivariate Analyses of Ecological Data
4 versions - Latest release: over 3 years ago - 290 downloads last month - 1 maintainer
easyCODA 0.34.3
Compositional Data Analysis in Practice
5 versions - Latest release: over 3 years ago - 333 downloads last month - 31 stars on GitHub - 1 maintainer
paco 0.4.2
Procrustes Application to Cophylogenetic Analysis
9 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 310 downloads last month - 1 maintainer
recluster 2.9
Ordination Methods for the Analysis of Beta-Diversity Indices
8 versions - Latest release: almost 4 years ago - 1 dependent repositories - 668 downloads last month - 3 stars on GitHub - 1 maintainer
DarkDiv 0.3.0
Estimating Dark Diversity and Site-Specific Species Pools
3 versions - Latest release: almost 4 years ago - 235 downloads last month - 1 maintainer
ecospace 1.4.2
Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks
7 versions - Latest release: almost 4 years ago - 312 downloads last month - 4 stars on GitHub - 1 maintainer
RTCC 0.1.1
Detecting Trait Clustering in Environmental Gradients
2 versions - Latest release: almost 4 years ago - 175 downloads last month - 1 maintainer
Top 8.6% on cran.r-project.org
picante 1.8.2
Integrating Phylogenies and Ecology
28 versions - Latest release: almost 4 years ago - 26 dependent packages - 72 dependent repositories - 4.77 thousand downloads last month - 1 maintainer
fieldRS 0.2.3 removed
Remote Sensing Field Work Tools
5 versions - Latest release: almost 4 years ago - 12 stars on GitHub - 1 maintainer
SSP 1.0.1
Simulated Sampling Procedure for Community Ecology
1 version - Latest release: about 4 years ago - 1 dependent repositories - 161 downloads last month - 2 stars on GitHub - 1 maintainer
metacom 1.5.3
Analysis of the 'Elements of Metacommunity Structure'
15 versions - Latest release: about 4 years ago - 1 dependent package - 1 dependent repositories - 455 downloads last month - 1 maintainer
abdiv 0.2.0
Alpha and Beta Diversity Measures
1 version - Latest release: over 4 years ago - 3 dependent repositories - 632 downloads last month - 9 stars on GitHub - 1 maintainer
PCPS 1.0.7
Principal Coordinates of Phylogenetic Structure
8 versions - Latest release: over 4 years ago - 2 dependent repositories - 298 downloads last month - 1 maintainer
SYNCSA 1.3.4
Analysis of Functional and Phylogenetic Patterns in Metacommunities
9 versions - Latest release: over 4 years ago - 1 dependent package - 3 dependent repositories - 445 downloads last month - 1 maintainer
MEDITS 0.1.7 removed
Analysis of MEDITS-Like Survey Data
1 version - Latest release: over 4 years ago - 142 downloads last month - 1 maintainer
propr 4.2.6 removed
Calculating Proportionality Between Vectors of Compositional Data
21 versions - Latest release: over 4 years ago - 2 dependent packages - 7 dependent repositories - 49 stars on GitHub
MEclustnet 1.2.2
Fit the Mixture of Experts Latent Position Cluster Model to Network Data
5 versions - Latest release: over 4 years ago - 207 downloads last month - 1 maintainer
hilldiv 1.5.1
Integral Analysis of Diversity Based on Hill Numbers
1 version - Latest release: over 4 years ago - 1 dependent repositories - 313 downloads last month - 7 stars on GitHub - 1 maintainer
HTSSIP 1.4.1
High Throughput Sequencing of Stable Isotope Probing Data Analysis
8 versions - Latest release: over 4 years ago - 1 dependent package - 1 dependent repositories - 361 downloads last month - 1 maintainer
HMP 2.0.1
Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
11 versions - Latest release: over 4 years ago - 1 dependent package - 1 dependent repositories - 412 downloads last month - 1 maintainer
segRDA 1.0.2
Modeling Non-Continuous Linear Responses of Ecological Data
1 version - Latest release: almost 5 years ago - 2 dependent repositories - 177 downloads last month - 2 stars on GitHub - 1 maintainer
RVenn 1.1.0
Set Operations for Many Sets
2 versions - Latest release: almost 5 years ago - 1 dependent package - 2 dependent repositories - 576 downloads last month - 1 maintainer
cassandRa 0.1.0 removed
Finds Missing Links and Metric Confidence Intervals in Ecological Bipartite Networks
1 version - Latest release: almost 5 years ago - 154 downloads last month - 1 maintainer
factorMerger 0.4.0 removed
The Merging Path Plot
6 versions - Latest release: almost 5 years ago - 2 dependent packages - 3 dependent repositories
BBI 0.3.0
Benthic Biotic Indices Calculation from Composition Data
2 versions - Latest release: over 5 years ago - 278 downloads last month - 1 stars on GitHub - 1 maintainer
SparseLPM 1.0
The Sparse Latent Position Model for Nonnegative Interaction Data
1 version - Latest release: over 5 years ago - 173 downloads last month - 1 maintainer
bcp 4.0.3 removed
Bayesian Analysis of Change Point Problems
28 versions - Latest release: almost 6 years ago - 4 dependent packages - 8 dependent repositories - 1.19 thousand downloads last month - 1 maintainer
RAM 1.2.1.7 removed
R for Amplicon-Sequencing-Based Microbial-Ecology
7 versions - Latest release: about 6 years ago
spaceNet 1.0.1
Latent Space Models for Multidimensional Networks
3 versions - Latest release: about 6 years ago - 189 downloads last month - 1 maintainer
soundecology 1.3.3
Soundscape Ecology
8 versions - Latest release: about 6 years ago - 1 dependent package - 2 dependent repositories - 651 downloads last month - 22 stars on GitHub - 1 maintainer
grapherator 1.0.0
A Modular Multi-Step Graph Generator
1 version - Latest release: over 6 years ago - 1 dependent package - 1 dependent repositories - 219 downloads last month - 9 stars on GitHub - 1 maintainer
FreeSortR 1.3
Free Sorting Data Analysis
4 versions - Latest release: over 6 years ago - 219 downloads last month - 1 maintainer
phylotools 0.2.2
Phylogenetic Tools for Eco-Phylogenetics
5 versions - Latest release: over 6 years ago - 1 dependent repositories - 570 downloads last month - 10 stars on GitHub - 1 maintainer
mpmcorrelogram 0.1-4
Multivariate Partial Mantel Correlogram
5 versions - Latest release: over 6 years ago - 222 downloads last month - 1 maintainer
dave 2.0 removed
Functions for "Data Analysis in Vegetation Ecology"
4 versions - Latest release: over 6 years ago - 1 dependent package - 339 downloads last month - 1 maintainer
SigTree 1.10.6
Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree
10 versions - Latest release: over 6 years ago - 279 downloads last month - 1 maintainer
ecolottery 1.0.0
Coalescent-Based Simulation of Ecological Communities
1 version - Latest release: almost 7 years ago - 543 downloads last month - 15 stars on GitHub - 1 maintainer
Demerelate 0.9-3 removed
Functions to Calculate Relatedness on Diploid Genetic Data
6 versions - Latest release: about 7 years ago - 1 dependent package
DiversityOccupancy 1.0.6 removed
Building Diversity Models from Multiple Species Occupancy Models
7 versions - Latest release: about 7 years ago - 455 downloads last month - 1 maintainer