crates.io "transcriptomics" keyword
kira-spatial 0.1.0
Deterministic orchestrator for spatial transcriptomics: IO, field transforms, core math, and 3D e...1 version - Latest release: 3 days ago - 0 downloads total - 1 maintainer
atg 0.8.7
Convert transcripts between different file formats16 versions - Latest release: 4 months ago - 21.1 thousand downloads total - 4 stars on GitHub - 1 maintainer
kira-spatial-field 0.1.0
Gene-field extraction and deterministic signal transforms for spatial transcriptomics.1 version - Latest release: 6 days ago - 0 downloads total - 1 maintainer
alevin-fry 0.13.0
A suite of tools for the rapid, accurate and memory-frugal processing single-cell and single-nucl...17 versions - Latest release: 11 days ago - 19.7 thousand downloads total - 201 stars on GitHub - 3 maintainers
isONclust3 0.3.0
Rust implementation of a novel de novo clustering algorithm. isONclust3 is a tool for clustering ...3 versions - Latest release: about 1 year ago - 2.78 thousand downloads total - 16 stars on GitHub - 1 maintainer
atglib 0.2.3
A library to handle transcripts for genomics and transcriptomics9 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 13.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
oarfish 0.9.2
A fast, accurate and versatile tool for long-read transcript quantification.14 versions - Latest release: 3 months ago - 11.4 thousand downloads total - 91 stars on GitHub - 1 maintainer
prll-ri 1.0.6
Parallel-RI, parallel executable binary to wrap RIblast.5 versions - Latest release: over 9 years ago - 8.78 thousand downloads total - 1 maintainer
mudskipper 0.1.0
Convert genomic alignments to transcriptomic BAM/RAD files.1 version - Latest release: about 4 years ago - 3.77 thousand downloads total - 36 stars on GitHub - 1 maintainer
kira-spatial-core 0.1.0
Deterministic spatial math and contour primitives for transcriptomics 3D pipelines.1 version - Latest release: 27 days ago - 0 downloads total - 1 maintainer
kira-spatial-io 0.1.0
Deterministic spatial transcriptomics IO primitives for Kira.1 version - Latest release: 28 days ago - 0 downloads total - 1 maintainer
Related Keywords
bioinformatics
9
oncology
4
spatial
4
rna-seq
3
visium
2
genetics
2
genomics
2
transcript
2
converter
2
quantification
2
single-cell-rna-seq
1
annotation-free
1
clustering
1
oxford-nanopore
1
pacbio-iso-seq
1
reference-free
1
long-read
1
rna
1
interactomics
1
scrna-seq
1
geometry
1
rust
1
10x
1
single-nucleus
1
atac-seq
1
single-cell
1
preprocessing
1
gene
1
gtf
1
cli-app
1
bioinformatics-tool
1