Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
formulae.brew.sh "bioinformatics" keyword
mrbayes 3.2.7
Bayesian inference of phylogenies and evolutionary models1 version - Latest release: about 2 years ago - 96 downloads last month - 220 stars on GitHub
bwa 0.7.17
Burrow-Wheeler Aligner for pairwise alignment of DNA1 version - Latest release: about 2 years ago - 1 dependent repositories - 95 downloads last month - 1,431 stars on GitHub
cromwell 86
Workflow Execution Engine using Workflow Description Language9 versions - Latest release: 6 months ago - 79 downloads last month - 960 stars on GitHub
minimap2 2.28
Versatile pairwise aligner for genomic and spliced nucleotide sequences5 versions - Latest release: about 1 month ago - 1 dependent repositories - 67 downloads last month - 1,691 stars on GitHub
fastp 0.23.4
Ultra-fast all-in-one FASTQ preprocessor3 versions - Latest release: 12 months ago - 63 downloads last month - 1,779 stars on GitHub
fgbio 2.2.1 💰
Tools for working with genomic and high throughput sequencing data4 versions - Latest release: 4 months ago - 54 downloads last month - 304 stars on GitHub
vsearch 2.27.1
Versatile open-source tool for microbiome analysis10 versions - Latest release: about 1 month ago - 53 downloads last month - 625 stars on GitHub
snakefmt 0.10.1
Snakemake code formatter10 versions - Latest release: 7 days ago - 52 downloads last month - 139 stars on GitHub
seqtk 1.4
Toolkit for processing sequences in FASTA/Q formats2 versions - Latest release: 12 months ago - 1 dependent repositories - 29 downloads last month - 1,308 stars on GitHub
proteinortho 6.3.1
Detecting orthologous genes within different species15 versions - Latest release: 5 months ago - 24 downloads last month - 14 stars on GitLab.com
minigraph 0.21
Proof-of-concept seq-to-graph mapper and graph generator2 versions - Latest release: 12 days ago - 23 downloads last month - 389 stars on GitHub
kalign 3.4.0
Fast multiple sequence alignment program for biological sequences4 versions - Latest release: 5 months ago - 18 downloads last month - 110 stars on GitHub
bedops 2.4.41
Set and statistical operations on genomic data of arbitrary scale2 versions - Latest release: almost 2 years ago - 12 downloads last month - 288 stars on GitHub
bioawk 1.0
AWK modified for biological data1 version - Latest release: about 2 years ago - 1 dependent repositories - 8 downloads last month - 581 stars on GitHub
sambamba 1.0.1
Tools for working with SAM/BAM data3 versions - Latest release: 8 months ago - 7 downloads last month - 552 stars on GitHub
rush-parallel 0.5.4 💰
Cross-platform command-line tool for executing jobs in parallel5 versions - Latest release: 5 months ago - 2 downloads last month - 827 stars on GitHub
Related Keywords
genomics
5
sequence-alignment
5
sequence-analysis
3
fastq
2
ngs
2
umi
2
parallel
2
pipeline
2
scala
2
windows
1
orthology inference
1
orthology
1
snakemake
1
python
1
formatter
1
fmt
1
codeformatter
1
code
1
black
1
search
1
microbiome
1
metagenomics
1
metabarcoding
1
fasta
1
clustering
1
shell
1
golang
1
execute
1
cross-platform
1
command
1
sam
1
bam
1
toolkit
1
set-theory
1
set
1
conversion
1
compression
1
c-plus-plus
1
c
1
bedops
1
bed
1
pan-genome
1
genome-graph
1
chimera
1
adapter
1
spliced-alignment
1
workflow-execution
1
workflow-description-language
1
workflow
1
wdl
1
hpc
1
ga4gh
1
executor
1
docker
1
containers
1
cloud
1
application
1
fm-index
1
research-tool
1
phylogenetics
1
markov-chain-monte-carlo
1
bayesian-inference
1
amplicon
1
molecular-indexes
1
fgbio
1
analyzing-genomic-data
1
trimming
1
splitting
1
sequencing
1
quality-control
1
quality
1
qc
1
preprocessing
1
polyg
1
overlap
1
merging
1
illumina
1
filtering
1
filter
1
duplication
1