Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
formulae.brew.sh "bioinformatics" keyword
snakefmt 0.10.1
Snakemake code formatter10 versions - Latest release: 7 days ago - 52 downloads last month - 139 stars on GitHub
minigraph 0.21
Proof-of-concept seq-to-graph mapper and graph generator2 versions - Latest release: 12 days ago - 23 downloads last month - 389 stars on GitHub
vsearch 2.27.1
Versatile open-source tool for microbiome analysis10 versions - Latest release: about 1 month ago - 53 downloads last month - 625 stars on GitHub
minimap2 2.28
Versatile pairwise aligner for genomic and spliced nucleotide sequences5 versions - Latest release: about 1 month ago - 1 dependent repositories - 67 downloads last month - 1,691 stars on GitHub
fgbio 2.2.1 💰
Tools for working with genomic and high throughput sequencing data4 versions - Latest release: 4 months ago - 54 downloads last month - 304 stars on GitHub
proteinortho 6.3.1
Detecting orthologous genes within different species15 versions - Latest release: 5 months ago - 24 downloads last month - 14 stars on GitLab.com
rush-parallel 0.5.4 💰
Cross-platform command-line tool for executing jobs in parallel5 versions - Latest release: 5 months ago - 2 downloads last month - 827 stars on GitHub
kalign 3.4.0
Fast multiple sequence alignment program for biological sequences4 versions - Latest release: 5 months ago - 18 downloads last month - 110 stars on GitHub
cromwell 86
Workflow Execution Engine using Workflow Description Language9 versions - Latest release: 6 months ago - 79 downloads last month - 960 stars on GitHub
sambamba 1.0.1
Tools for working with SAM/BAM data3 versions - Latest release: 8 months ago - 7 downloads last month - 552 stars on GitHub
fastp 0.23.4
Ultra-fast all-in-one FASTQ preprocessor3 versions - Latest release: 12 months ago - 63 downloads last month - 1,779 stars on GitHub
seqtk 1.4
Toolkit for processing sequences in FASTA/Q formats2 versions - Latest release: 12 months ago - 1 dependent repositories - 29 downloads last month - 1,308 stars on GitHub
bedops 2.4.41
Set and statistical operations on genomic data of arbitrary scale2 versions - Latest release: almost 2 years ago - 12 downloads last month - 288 stars on GitHub
mrbayes 3.2.7
Bayesian inference of phylogenies and evolutionary models1 version - Latest release: about 2 years ago - 96 downloads last month - 220 stars on GitHub
bwa 0.7.17
Burrow-Wheeler Aligner for pairwise alignment of DNA1 version - Latest release: about 2 years ago - 1 dependent repositories - 95 downloads last month - 1,431 stars on GitHub
bioawk 1.0
AWK modified for biological data1 version - Latest release: about 2 years ago - 1 dependent repositories - 8 downloads last month - 581 stars on GitHub
Related Keywords
sequence-alignment
5
genomics
5
sequence-analysis
3
ngs
2
scala
2
umi
2
fastq
2
parallel
2
pipeline
2
adapter
1
sam
1
duplication
1
bam
1
workflow-execution
1
filter
1
workflow-description-language
1
filtering
1
illumina
1
merging
1
overlap
1
polyg
1
workflow
1
wdl
1
spliced-alignment
1
fm-index
1
research-tool
1
phylogenetics
1
markov-chain-monte-carlo
1
bayesian-inference
1
toolkit
1
set-theory
1
set
1
conversion
1
compression
1
c-plus-plus
1
c
1
bedops
1
bed
1
trimming
1
splitting
1
sequencing
1
quality-control
1
quality
1
qc
1
preprocessing
1
search
1
microbiome
1
metagenomics
1
metabarcoding
1
fasta
1
clustering
1
chimera
1
amplicon
1
pan-genome
1
genome-graph
1
snakemake
1
python
1
formatter
1
fmt
1
codeformatter
1
code
1
black
1
hpc
1
ga4gh
1
executor
1
docker
1
containers
1
cloud
1
application
1
windows
1
shell
1
golang
1
execute
1
cross-platform
1
command
1
orthology inference
1
orthology
1
molecular-indexes
1
fgbio
1
analyzing-genomic-data
1