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hPDB

Protein Data Bank file format is a most popular format for holding biological macromolecular data. This is a very fast sequential parser: below 7s for the largest entry in PDB - 1HTQ which is over 70MB - as compared with 11s of RASMOL 2.7.5, or 2m15s of BioPython with Python 2.6 interpreter. In its parallel incarnation it is most probably the fastest parser for PDB format. It is aimed to not only deliver event-based interface, but also a high-level data structure for manipulating data in spirit of BioPython's PDB parser. hPDB - Haskell library for processing atomic biomolecular structures in Protein Data Bank format - Michal Jan Gajda. BMC Research Notes 2013, 6:483.

Ecosystem
hackage.haskell.org
Latest Release
1.2.0
almost 12 years ago
Versions
22
Downloads
15,548 total
Dependent Repos
135
Links
Registry hackage.haskell.org
Source Repository
JSON API View JSON
CodeMeta codemeta.json
Package Details
PURL pkg:hackage/hPDB
spec
License BSD-3-Clause
First Release over 12 years ago
Last Synced 22 days ago
Repository
Stars 21 on GitHub
Forks 7 on GitHub
Commits 132
Committers 6
Avg per Author 22.0
DDS 0.303
Rankings on hackage.haskell.org
Downloads Top 10.0%
Dependent repos Top 4.6%