Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

hub.docker.com "bioinformatics" keyword

biocontainers/allpathslg
whole‐genome shotgun assembler that can generate high‐quality genome assemblies using short reads
Latest release: 2 days ago - 3 downloads total - 620 stars on GitHub
Top 0.6% on hub.docker.com
biocontainers/emboss 6.5.7
software analysis package
5 versions - Latest release: about 6 years ago - 217 thousand downloads total - 620 stars on GitHub
Top 8.7% on hub.docker.com
biocontainers/bamutils
programs that perform operations on SAM/BAM files
Latest release: 4 days ago - 7 downloads total - 620 stars on GitHub
Top 1.2% on hub.docker.com
biocontainers/openms 2.2.0_cv6
C++ libraries ans tools for MS/MS data analysis
8 versions - Latest release: 2 months ago - 3.2 thousand downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/msgfp v9949_cv4
MS/MS database search tool
4 versions - Latest release: over 5 years ago - 1.07 thousand downloads total - 620 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/novor v1b_cv5
real-time peptide de novo sequencing
4 versions - Latest release: over 5 years ago - 970 downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/searchgui 2.8.6
graphical user interface for proteomics identification search engines
6 versions - Latest release: about 6 years ago - 1.01 thousand downloads total - 620 stars on GitHub
Top 1.9% on hub.docker.com
biocontainers/pepnovop 20120423
de novo sequencing of low precision MS/MS data
1 version - Latest release: about 6 years ago - 221 downloads total - 634 stars on GitHub
Top 0.5% on hub.docker.com
nfcore/sarek 2.7.2
A Docker container for the nf-core/sarek pipeline
10 versions - Latest release: almost 2 years ago - 1.06 million downloads total - 294 stars on GitHub
Top 0.4% on hub.docker.com
biocontainers/abyss 1.9.0
ABySS is a *de novo* sequence assembler
5 versions - Latest release: about 6 years ago - 1 dependent repositories - 12.1 thousand downloads total - 620 stars on GitHub
Top 0.3% on hub.docker.com
nfcore/eager 2.5.1
A Docker image for the nf-core/eager pipeline.
30 versions - Latest release: 2 months ago - 1 dependent repositories - 41.7 thousand downloads total - 122 stars on GitHub
staphb/dragonflye 1.1.2
Dragonflye: Assemble bacterial isolate genomes from Nanopore reads
4 versions - Latest release: 3 months ago - 116 downloads total - 163 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/msamanda v1.0.0.5242_cv4
scoring system to identify peptides out of tandem mass spectrometry
4 versions - Latest release: over 5 years ago - 564 downloads total - 634 stars on GitHub
Top 1.3% on hub.docker.com
biocontainers/dia-umpire 2.1.2
computational analysis of DIA mass spectrometry-based proteomics data
6 versions - Latest release: about 6 years ago - 1.59 thousand downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/denovogui 1.10.4
graphical user interface for de novo sequencing of tandem mass spectra
8 versions - Latest release: about 6 years ago - 1.04 thousand downloads total - 634 stars on GitHub
Top 1.6% on hub.docker.com
biocontainers/saintq 0.0.2
assigning confidence scores to protein-protein interactions based on quantitative proteomics
3 versions - Latest release: about 6 years ago - 806 downloads total - 620 stars on GitHub
Top 1.3% on hub.docker.com
biocontainers/clustal-omega v1.2.1_cv5
general purpose multiple sequence alignment program for proteins
3 versions - Latest release: over 5 years ago - 1.96 thousand downloads total - 634 stars on GitHub
Top 0.2% on hub.docker.com
biocontainers/biocontainers debian-buster-backports_cv2
Biocontainers base Image
15 versions - Latest release: 6 months ago - 17 dependent repositories - 300 thousand downloads total - 634 stars on GitHub
Top 2.3% on hub.docker.com
biocontainers/toppas v1.11.1-3_cv3
a graphical workflow editor for the analysis of high-throughput proteomics data
1 version - Latest release: over 5 years ago - 100 downloads total - 620 stars on GitHub
Top 0.2% on hub.docker.com
biocontainers/samtools 1.3.1
Tools for manipulating next-generation sequencing data
14 versions - Latest release: about 6 years ago - 1 dependent repositories - 505 thousand downloads total - 634 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/cava 1.1.1
lightweight, fast and flexible NGS variant annotation tool
3 versions - Latest release: about 6 years ago - 877 downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/pia v1.3.0_cv2
Compile PIA XML files and run pipelines with this image
5 versions - Latest release: over 5 years ago - 1.06 thousand downloads total - 620 stars on GitHub
Top 0.5% on hub.docker.com
biocontainers/bwa 0.7.15
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
12 versions - Latest release: about 6 years ago - 1 dependent repositories - 53.6 thousand downloads total - 634 stars on GitHub
Top 0.4% on hub.docker.com
biocontainers/bamtools 2.4.0
C++ API & command-line toolkit for working with BAM data
8 versions - Latest release: about 6 years ago - 1 dependent repositories - 15.8 thousand downloads total - 634 stars on GitHub
Top 1.2% on hub.docker.com
biocontainers/peptideprophet v201510131012_cv3
Peptide assignment statistics and validation
4 versions - Latest release: almost 5 years ago - 2.53 thousand downloads total - 634 stars on GitHub
Top 1.6% on hub.docker.com
biocontainers/crux v3.2_cv3
a software toolkit for tandem mass spectrometry analysis
4 versions - Latest release: over 5 years ago - 504 downloads total - 620 stars on GitHub
Top 0.4% on hub.docker.com
biocontainers/tpp v5.2_cv1
a collection of integrated tools for MS/MS proteomics
7 versions - Latest release: about 5 years ago - 1 dependent repositories - 11.1 thousand downloads total - 634 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/proteowizard v3_0_9740_cv2
tools and software libraries that facilitate proteomics data analysis
3 versions - Latest release: over 5 years ago - 640 downloads total - 634 stars on GitHub
Top 1.3% on hub.docker.com
biocontainers/proteinprophet v201510131012_cv4
Protein inference for MS/MS analysis
4 versions - Latest release: almost 5 years ago - 1.79 thousand downloads total - 634 stars on GitHub
Top 0.8% on hub.docker.com
biocontainers/xtandem 15-12-15-2
software that can match tandem mass spectra with peptide sequences
2 versions - Latest release: about 6 years ago - 18 thousand downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/spectra-cluster-cli vv1.1.2_cv1
PRIDE Cluster algorithm to cluster heterogeneous mass spectra
7 versions - Latest release: over 5 years ago - 1.31 thousand downloads total - 634 stars on GitHub
Top 0.9% on hub.docker.com
biocontainers/bowtie 1.1.2
an ultrafast memory-efficient short read aligner
5 versions - Latest release: about 6 years ago - 10.4 thousand downloads total - 620 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/percolator v3.0_cv4
Semi-supervised learning for peptide identification from shotgun proteomics datasets
4 versions - Latest release: over 5 years ago - 952 downloads total - 634 stars on GitHub
biocontainers/pia-web-server
Web server for PIA - Protein Inference Algorithms
Latest release: about 1 month ago - 1 downloads total - 620 stars on GitHub
Top 0.6% on hub.docker.com
biocontainers/bedtools 2.25.0
a powerful toolset for genome arithmetic
9 versions - Latest release: about 6 years ago - 211 thousand downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/peptideshaker 1.10.3
interpretation of proteomics identification results
10 versions - Latest release: about 6 years ago - 1.11 thousand downloads total - 634 stars on GitHub
Top 0.3% on hub.docker.com
biocontainers/bcftools 1.3.1
variant calling and manipulating VCFs and BCFs
8 versions - Latest release: over 6 years ago - 1 dependent repositories - 1.03 million downloads total - 634 stars on GitHub
Top 0.3% on hub.docker.com
biocontainers/bowtie2 2.2.9
an ultrafast memory-efficient short read aligner
12 versions - Latest release: about 6 years ago - 1 dependent repositories - 69.9 thousand downloads total - 620 stars on GitHub
Top 0.7% on hub.docker.com
biocontainers/blast 2.2.31
basic local alignment search tool
5 versions - Latest release: about 6 years ago - 78.6 thousand downloads total - 620 stars on GitHub
Top 0.7% on hub.docker.com
biocontainers/comet v2016011_cv5
an open source tandem mass spectrometry sequence database search tool
22 versions - Latest release: almost 5 years ago - 50.8 thousand downloads total - 620 stars on GitHub
Top 0.6% on hub.docker.com
broadinstitute/gatk-nightly 2024-03-02-4.5.0.0-8-gcfd4d87ec-NIGHTLY-SNAPSHOT
Official repository for nightly development builds of the GATK
1,355 versions - Latest release: 2 months ago - 92.2 thousand downloads total - 1,569 stars on GitHub
Top 0.3% on hub.docker.com
biocontainers/picard 2.3.0
Java CLI tools for manipulating HTS data and formats
9 versions - Latest release: about 6 years ago - 1 dependent repositories - 39.1 thousand downloads total - 620 stars on GitHub
Top 0.6% on hub.docker.com
biocontainers/vcftools 0.1.15
"tools written in Perl and C++ for working with VCF files
7 versions - Latest release: about 6 years ago - 167 thousand downloads total - 620 stars on GitHub
Top 2.7% on hub.docker.com
broadinstitute/hellbender latest
Hellbender Docker Automated Build.
2 versions - Latest release: over 1 year ago - 355 downloads total - 1,553 stars on GitHub
Related Keywords
dockerfiles 40 biocontainers-architecture 39 bioinformatics-analysis 39 bioinformatics-containers 39 docker-image 39 rkt 39 genomics 3 genome 3 spark 2 sequencing 2 science 2 ngs 2 gatk 2 dna 2 workflow 2 pipeline 2 nf-core 2 containers 2 nextflow 2 annotation 1 cancer 1 conda 1 gatk4 1 germline 1 singularity 1 docker 1 population-genetics 1 pathogen-genomics 1 metagenomics 1 next-generation-sequencing 1 ancientdna 1 ancient-dna-analysis 1 adna 1 whole-genome-sequencing 1 whole-exome-sequencing 1 variant-calling 1 target-panels 1 somatic 1 reproducible-research 1 pre-processing 1