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hub.docker.com "bioinformatics" keyword

View the packages on the hub.docker.com package registry that are tagged with the "bioinformatics" keyword.

Top 0.2% on hub.docker.com
biocontainers/samtools 1.3.1
Tools for manipulating next-generation sequencing data
14 versions - Latest release: over 7 years ago - 1 dependent repositories - 586 thousand downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/spectra-cluster-cli vv1.1.2_cv1
PRIDE Cluster algorithm to cluster heterogeneous mass spectra
7 versions - Latest release: over 6 years ago - 1.42 thousand downloads total - 634 stars on GitHub
Top 0.3% on hub.docker.com
biocontainers/bcftools 1.3.1
variant calling and manipulating VCFs and BCFs
8 versions - Latest release: almost 8 years ago - 1 dependent repositories - 1.05 million downloads total - 634 stars on GitHub
Top 2.7% on hub.docker.com
broadinstitute/hellbender latest
Hellbender Docker Automated Build.
2 versions - Latest release: over 2 years ago - 399 downloads total - 1,553 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/searchgui 2.8.6
graphical user interface for proteomics identification search engines
6 versions - Latest release: over 7 years ago - 1.05 thousand downloads total - 620 stars on GitHub
Top 1.9% on hub.docker.com
biocontainers/pepnovop 20120423
de novo sequencing of low precision MS/MS data
1 version - Latest release: over 7 years ago - 258 downloads total - 634 stars on GitHub
Top 0.9% on hub.docker.com
biocontainers/bowtie 1.1.2
an ultrafast memory-efficient short read aligner
5 versions - Latest release: over 7 years ago - 11.9 thousand downloads total - 620 stars on GitHub
Top 0.4% on hub.docker.com
biocontainers/abyss 1.9.0
ABySS is a *de novo* sequence assembler
5 versions - Latest release: over 7 years ago - 1 dependent repositories - 12.3 thousand downloads total - 620 stars on GitHub
Top 0.3% on hub.docker.com
nfcore/eager 2.5.3
A Docker image for the nf-core/eager pipeline.
32 versions - Latest release: 4 months ago - 1 dependent repositories - 48.6 thousand downloads total - 122 stars on GitHub
Top 0.3% on hub.docker.com
biocontainers/picard 2.3.0
Java CLI tools for manipulating HTS data and formats
9 versions - Latest release: over 7 years ago - 1 dependent repositories - 39.5 thousand downloads total - 620 stars on GitHub
Top 0.5% on hub.docker.com
biocontainers/bwa 0.7.15
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
12 versions - Latest release: over 7 years ago - 1 dependent repositories - 64.2 thousand downloads total - 634 stars on GitHub
Top 1.3% on hub.docker.com
biocontainers/dia-umpire 2.1.2
computational analysis of DIA mass spectrometry-based proteomics data
6 versions - Latest release: over 7 years ago - 1.74 thousand downloads total - 634 stars on GitHub
Top 1.3% on hub.docker.com
biocontainers/proteinprophet v201510131012_cv4
Protein inference for MS/MS analysis
4 versions - Latest release: about 6 years ago - 1.87 thousand downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/denovogui 1.10.4
graphical user interface for de novo sequencing of tandem mass spectra
8 versions - Latest release: over 7 years ago - 1.17 thousand downloads total - 634 stars on GitHub
Top 1.2% on hub.docker.com
biocontainers/peptideprophet v201510131012_cv3
Peptide assignment statistics and validation
4 versions - Latest release: about 6 years ago - 2.6 thousand downloads total - 634 stars on GitHub
Top 0.7% on hub.docker.com
biocontainers/blast 2.2.31
basic local alignment search tool
5 versions - Latest release: over 7 years ago - 82.4 thousand downloads total - 620 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/pia v1.3.0_cv2
Compile PIA XML files and run pipelines with this image
5 versions - Latest release: over 6 years ago - 1.15 thousand downloads total - 620 stars on GitHub
Top 0.3% on hub.docker.com
biocontainers/bowtie2 2.2.9
an ultrafast memory-efficient short read aligner
12 versions - Latest release: over 7 years ago - 1 dependent repositories - 76.5 thousand downloads total - 620 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/cava 1.1.1
lightweight, fast and flexible NGS variant annotation tool
3 versions - Latest release: over 7 years ago - 934 downloads total - 634 stars on GitHub
biocontainers/pia-web-server
Web server for PIA - Protein Inference Algorithms
Latest release: 28 days ago - 1 downloads total - 620 stars on GitHub
Top 0.4% on hub.docker.com
biocontainers/tpp v5.2_cv1
a collection of integrated tools for MS/MS proteomics
7 versions - Latest release: about 6 years ago - 1 dependent repositories - 11.3 thousand downloads total - 634 stars on GitHub
Top 0.5% on hub.docker.com
nfcore/sarek 2.7.2
A Docker container for the nf-core/sarek pipeline
10 versions - Latest release: about 3 years ago - 1.08 million downloads total - 294 stars on GitHub
Top 0.7% on hub.docker.com
biocontainers/comet v2016011_cv5
an open source tandem mass spectrometry sequence database search tool
22 versions - Latest release: about 6 years ago - 51.1 thousand downloads total - 620 stars on GitHub
Top 1.6% on hub.docker.com
biocontainers/saintq 0.0.2
assigning confidence scores to protein-protein interactions based on quantitative proteomics
3 versions - Latest release: over 7 years ago - 843 downloads total - 620 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/msgfp v9949_cv4
MS/MS database search tool
4 versions - Latest release: over 6 years ago - 1.11 thousand downloads total - 620 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/novor v1b_cv5
real-time peptide de novo sequencing
4 versions - Latest release: over 6 years ago - 1.02 thousand downloads total - 634 stars on GitHub
Top 0.2% on hub.docker.com
biocontainers/biocontainers debian-bullseye-backport_cv1
Biocontainers base Image
17 versions - Latest release: about 1 year ago - 17 dependent repositories - 373 thousand downloads total - 634 stars on GitHub
Top 0.6% on hub.docker.com
biocontainers/bedtools 2.25.0
a powerful toolset for genome arithmetic
9 versions - Latest release: over 7 years ago - 229 thousand downloads total - 634 stars on GitHub
Top 8.7% on hub.docker.com
biocontainers/bamutils
programs that perform operations on SAM/BAM files
Latest release: about 2 months ago - 7 downloads total - 620 stars on GitHub
Top 2.3% on hub.docker.com
biocontainers/toppas v1.11.1-3_cv3
a graphical workflow editor for the analysis of high-throughput proteomics data
1 version - Latest release: over 6 years ago - 112 downloads total - 620 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/msamanda v1.0.0.5242_cv4
scoring system to identify peptides out of tandem mass spectrometry
4 versions - Latest release: over 6 years ago - 596 downloads total - 634 stars on GitHub
staphb/dragonflye 1.2.1
Dragonflye: Assemble bacterial isolate genomes from Nanopore reads
6 versions - Latest release: about 1 year ago - 426 downloads total - 163 stars on GitHub
Top 1.2% on hub.docker.com
biocontainers/openms 2.2.0_cv6
C++ libraries ans tools for MS/MS data analysis
8 versions - Latest release: over 1 year ago - 3.4 thousand downloads total - 634 stars on GitHub
Top 0.4% on hub.docker.com
biocontainers/bamtools 2.4.0
C++ API & command-line toolkit for working with BAM data
8 versions - Latest release: over 7 years ago - 1 dependent repositories - 16.7 thousand downloads total - 634 stars on GitHub
Top 1.3% on hub.docker.com
biocontainers/clustal-omega v1.2.1_cv5
general purpose multiple sequence alignment program for proteins
3 versions - Latest release: over 6 years ago - 2.1 thousand downloads total - 634 stars on GitHub
Top 0.8% on hub.docker.com
biocontainers/xtandem 15-12-15-2
software that can match tandem mass spectra with peptide sequences
2 versions - Latest release: over 7 years ago - 18 thousand downloads total - 634 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/percolator v3.0_cv4
Semi-supervised learning for peptide identification from shotgun proteomics datasets
4 versions - Latest release: over 6 years ago - 976 downloads total - 634 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/proteowizard v3_0_9740_cv2
tools and software libraries that facilitate proteomics data analysis
3 versions - Latest release: over 6 years ago - 676 downloads total - 634 stars on GitHub
Top 0.6% on hub.docker.com
biocontainers/vcftools 0.1.15
"tools written in Perl and C++ for working with VCF files
7 versions - Latest release: over 7 years ago - 185 thousand downloads total - 620 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/peptideshaker 1.10.3
interpretation of proteomics identification results
10 versions - Latest release: over 7 years ago - 1.16 thousand downloads total - 634 stars on GitHub
biocontainers/allpathslg
whole‐genome shotgun assembler that can generate high‐quality genome assemblies using short reads
Latest release: 5 months ago - 3 downloads total - 620 stars on GitHub
Top 0.6% on hub.docker.com
broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT
Official repository for nightly development builds of the GATK
1,520 versions - Latest release: 12 months ago - 186 thousand downloads total - 1,569 stars on GitHub
Top 0.6% on hub.docker.com
biocontainers/emboss 6.5.7
software analysis package
5 versions - Latest release: over 7 years ago - 217 thousand downloads total - 620 stars on GitHub
Top 1.6% on hub.docker.com
biocontainers/crux v3.2_cv3
a software toolkit for tandem mass spectrometry analysis
4 versions - Latest release: over 6 years ago - 519 downloads total - 620 stars on GitHub
Related Keywords
dockerfiles 40 biocontainers-architecture 39 bioinformatics-analysis 39 bioinformatics-containers 39 docker-image 39 rkt 39 genome 3 genomics 3 workflow 2 pipeline 2 nf-core 2 nextflow 2 containers 2 spark 2 sequencing 2 science 2 ngs 2 gatk 2 dna 2 germline 1 next-generation-sequencing 1 pre-processing 1 reproducible-research 1 somatic 1 target-panels 1 variant-calling 1 whole-exome-sequencing 1 whole-genome-sequencing 1 docker 1 singularity 1 gatk4 1 conda 1 cancer 1 annotation 1 population-genetics 1 pathogen-genomics 1 metagenomics 1 ancientdna 1 ancient-dna-analysis 1 adna 1