Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

hub.docker.com namespaces: biocontainers

Top 0.3% on hub.docker.com
biocontainers/bcftools 1.3.1
variant calling and manipulating VCFs and BCFs
8 versions - Latest release: over 6 years ago - 1 dependent repositories - 1.03 million downloads total - 634 stars on GitHub
Top 0.2% on hub.docker.com
biocontainers/samtools 1.3.1
Tools for manipulating next-generation sequencing data
14 versions - Latest release: about 6 years ago - 1 dependent repositories - 505 thousand downloads total - 634 stars on GitHub
Top 0.2% on hub.docker.com
biocontainers/biocontainers debian-buster-backports_cv2
Biocontainers base Image
15 versions - Latest release: 6 months ago - 17 dependent repositories - 300 thousand downloads total - 634 stars on GitHub
Top 0.9% on hub.docker.com
biocontainers/picard-tools v2.18.25dfsg-2-deb_cv1
2 versions - Latest release: over 4 years ago - 233 thousand downloads total
Top 0.6% on hub.docker.com
biocontainers/emboss 6.5.7
software analysis package
5 versions - Latest release: about 6 years ago - 217 thousand downloads total - 620 stars on GitHub
Top 0.6% on hub.docker.com
biocontainers/bedtools 2.25.0
a powerful toolset for genome arithmetic
9 versions - Latest release: about 6 years ago - 211 thousand downloads total - 634 stars on GitHub
Top 0.6% on hub.docker.com
biocontainers/vcftools 0.1.15
"tools written in Perl and C++ for working with VCF files
7 versions - Latest release: about 6 years ago - 167 thousand downloads total - 620 stars on GitHub
Top 0.5% on hub.docker.com
biocontainers/tabix v1.9-11-deb_cv1
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 90.6 thousand downloads total
Top 0.7% on hub.docker.com
biocontainers/blast 2.2.31
basic local alignment search tool
5 versions - Latest release: about 6 years ago - 78.6 thousand downloads total - 620 stars on GitHub
Top 0.3% on hub.docker.com
biocontainers/bowtie2 2.2.9
an ultrafast memory-efficient short read aligner
12 versions - Latest release: about 6 years ago - 1 dependent repositories - 69.9 thousand downloads total - 620 stars on GitHub
Top 1.1% on hub.docker.com
biocontainers/talon v5.0_cv1
9 versions - Latest release: about 4 years ago - 66.4 thousand downloads total
Top 1.1% on hub.docker.com
biocontainers/plink1.9 v1.90b6.6-181012-1-deb_cv1
2 versions - Latest release: over 4 years ago - 59.7 thousand downloads total
Top 0.5% on hub.docker.com
biocontainers/bwa 0.7.15
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
12 versions - Latest release: about 6 years ago - 1 dependent repositories - 53.6 thousand downloads total - 634 stars on GitHub
Top 1.1% on hub.docker.com
biocontainers/control-freec v11.5_cv1
1 version - Latest release: over 4 years ago - 52.1 thousand downloads total
Top 0.7% on hub.docker.com
biocontainers/comet v2016011_cv5
an open source tandem mass spectrometry sequence database search tool
22 versions - Latest release: almost 5 years ago - 50.8 thousand downloads total - 620 stars on GitHub
Top 2.1% on hub.docker.com
biocontainers/guidance2 v2.02_cv1
1 version - Latest release: almost 6 years ago - 48.2 thousand downloads total
Top 0.3% on hub.docker.com
biocontainers/picard 2.3.0
Java CLI tools for manipulating HTS data and formats
9 versions - Latest release: about 6 years ago - 1 dependent repositories - 39.1 thousand downloads total - 620 stars on GitHub
Top 1.2% on hub.docker.com
biocontainers/eido 0.1.9_cv2
4 versions - Latest release: over 1 year ago - 29.5 thousand downloads total
Top 1.2% on hub.docker.com
biocontainers/transcriptclean v2.0.2_cv1
3 versions - Latest release: over 4 years ago - 28.1 thousand downloads total
Top 1.2% on hub.docker.com
biocontainers/cutadapt v1.18-1-deb-py3_cv1
6 versions - Latest release: over 4 years ago - 26.1 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/freecontact v1.1-4-deb-py2_cv1
5 versions - Latest release: over 4 years ago - 25.6 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/csb v1.2.5dfsg-3-deb-py3_cv1
5 versions - Latest release: over 4 years ago - 25.4 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/fast5 v0.6.5-2b1-deb-py3_cv1
6 versions - Latest release: over 4 years ago - 25.3 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/pyvcf v0.6.8git20170215.476169c-1-deb_cv1
6 versions - Latest release: over 4 years ago - 22.6 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/odil v0.10.0-3-deb-py3_cv1
5 versions - Latest release: over 4 years ago - 22.6 thousand downloads total
Top 1.9% on hub.docker.com
biocontainers/diann 1.8.1_cv2
4 versions - Latest release: 4 months ago - 22.6 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/trimmomatic v0.38dfsg-1-deb_cv1
2 versions - Latest release: over 4 years ago - 21.6 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/fastp v0.20.1_cv1
2 versions - Latest release: almost 4 years ago - 21.6 thousand downloads total
Top 0.7% on hub.docker.com
biocontainers/biopython v1.73dfsg-1-deb-py3_cv1
4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 20.9 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/abacas v1.3.1-5-deb_cv1
2 versions - Latest release: almost 5 years ago - 19.4 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/biom-format v2.1.7dfsg-2-deb-py3_cv1
4 versions - Latest release: almost 5 years ago - 19 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/avro v1.8.2dfsg-2-deb-py2_cv1
4 versions - Latest release: almost 5 years ago - 18.9 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/pysam v0.15.2ds-2-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 18.6 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/bcbio v1.1.2-3-deb-py3_cv1
2 versions - Latest release: almost 5 years ago - 18.6 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/burrito v0.9.1-3-deb-py3_cv1
3 versions - Latest release: over 4 years ago - 18.3 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/bx-tools v0.8.2-1-deb-py2_cv1
2 versions - Latest release: over 4 years ago - 18.2 thousand downloads total
Top 0.8% on hub.docker.com
biocontainers/xtandem 15-12-15-2
software that can match tandem mass spectra with peptide sequences
2 versions - Latest release: about 6 years ago - 18 thousand downloads total - 634 stars on GitHub
Top 1.3% on hub.docker.com
biocontainers/bz2file v0.98-2-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 17.4 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/fitbit v0.3.0-4-deb-py2_cv1
3 versions - Latest release: over 4 years ago - 17.1 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/cyvcf2 v0.10.4-1-deb-py3_cv1
2 versions - Latest release: over 4 years ago - 17.1 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/easydev v0.9.37-1-deb-py3_cv1
2 versions - Latest release: over 4 years ago - 17 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/colormap v1.0.2-1-deb-py2_cv1
2 versions - Latest release: over 4 years ago - 16.9 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/dendropy v4.4.0-1-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 16.9 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/genometools v1.5.10ds-3-deb_cv1
4 versions - Latest release: over 4 years ago - 16.6 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/hl7 v0.3.4-3-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 16.5 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/prodigal v1-2.6.3-4-deb_cv1
2 versions - Latest release: over 4 years ago - 16.5 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/freebayes v1.2.0-2-deb_cv1
2 versions - Latest release: over 4 years ago - 16.2 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/hisat2 v2.1.0-2-deb_cv1
2 versions - Latest release: over 4 years ago - 16 thousand downloads total
Top 0.4% on hub.docker.com
biocontainers/bamtools 2.4.0
C++ API & command-line toolkit for working with BAM data
8 versions - Latest release: about 6 years ago - 1 dependent repositories - 15.8 thousand downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/kineticstools v0.6.1git20180425.27a1878-2-deb_cv1
4 versions - Latest release: over 4 years ago - 15.8 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/pbh5tools v0.8.0git20170929.58d54ffdfsg-1-deb-py2_cv1
4 versions - Latest release: over 4 years ago - 15.5 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/pbconsensuscore v1.1.1dfsg-1-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 15.5 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/pbgenomicconsensus v2.3.2-5-deb_cv1
4 versions - Latest release: over 4 years ago - 15.5 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/mypy v0.670-2-deb_cv1
3 versions - Latest release: over 4 years ago - 15.4 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/ruffus v2.8.1-4-deb-py2_cv1
4 versions - Latest release: over 4 years ago - 15.4 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/xopen v0.5.0-2-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 15.3 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/pyfaidx v0.5.5.2-1-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 15.3 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/mia v0.1.9-2b1-deb-py2_cv1
4 versions - Latest release: over 4 years ago - 15.2 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/openslide v1.1.1-4-deb-py2_cv1
4 versions - Latest release: over 4 years ago - 15.1 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/pbalign v0.3.2-1-deb_cv1
4 versions - Latest release: over 4 years ago - 15.1 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/multipletau v0.3.3ds-1-deb-py2_cv1
4 versions - Latest release: over 4 years ago - 15.1 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/ngs v2.9.3-1-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 15.1 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/cellpose 3.0.1_cv1
6 versions - Latest release: 3 months ago - 15.1 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/sqlsoup v0.9.1-3-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 15 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/rdflib-jsonld v0.4.0-4-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 15 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/sickle v1.33git20150314.f3d6ae3-1-deb_cv1
2 versions - Latest release: over 4 years ago - 14.7 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/alien-hunter v1.7-7-deb_cv2
3 versions - Latest release: over 2 years ago - 13.1 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/seqtk v1.3-1-deb_cv1
2 versions - Latest release: over 4 years ago - 12.8 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/patchwork 0.5.2_cv1
3 versions - Latest release: over 1 year ago - 12.6 thousand downloads total
Top 0.4% on hub.docker.com
biocontainers/abyss 1.9.0
ABySS is a *de novo* sequence assembler
5 versions - Latest release: about 6 years ago - 1 dependent repositories - 12.1 thousand downloads total - 620 stars on GitHub
Top 1.7% on hub.docker.com
biocontainers/oncocnv v7.0_cv2
2 versions - Latest release: over 1 year ago - 12.1 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/krona v2.7.1_cv1
1 version - Latest release: over 4 years ago - 12.1 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/bedops v2.4.35dfsg-1-deb_cv1
2 versions - Latest release: almost 5 years ago - 11.4 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/test-ci v0.0.2
11 versions - Latest release: about 6 years ago - 11.3 thousand downloads total
Top 0.8% on hub.docker.com
biocontainers/adapterremoval v2.2.3-1-deb_cv1
2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 11.1 thousand downloads total
Top 0.4% on hub.docker.com
biocontainers/tpp v5.2_cv1
a collection of integrated tools for MS/MS proteomics
7 versions - Latest release: about 5 years ago - 1 dependent repositories - 11.1 thousand downloads total - 634 stars on GitHub
Top 2.0% on hub.docker.com
biocontainers/ncbi-datasets-cli 15.12.0_cv23.1.0-4
3 versions - Latest release: 9 months ago - 10.8 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/bio-eagle v2.4.1-1-deb_cv1
2 versions - Latest release: almost 5 years ago - 10.6 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/augustus v3.3.2dfsg-2-deb_cv1
2 versions - Latest release: almost 5 years ago - 10.5 thousand downloads total
Top 0.9% on hub.docker.com
biocontainers/bowtie 1.1.2
an ultrafast memory-efficient short read aligner
5 versions - Latest release: about 6 years ago - 10.4 thousand downloads total - 620 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/tvc v5.0.3git20151221.80e144edfsg-2-deb_cv1
1 version - Latest release: almost 5 years ago - 10.3 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/altree v1.3.1-7b1-deb_cv1
2 versions - Latest release: almost 5 years ago - 10.1 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/acedb-other-belvu v4.9.39dfsg.02-4-deb_cv1
3 versions - Latest release: almost 5 years ago - 10 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/ballview v1.5.0git20180813.37fc53c-3-deb_cv1
3 versions - Latest release: almost 5 years ago - 9.98 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/fastx-toolkit v0.0.14-6-deb_cv1
2 versions - Latest release: over 4 years ago - 9.95 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/gemma v0.98.1dfsg-1-deb_cv1
1 version - Latest release: over 4 years ago - 9.95 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/amide v1.0.5-12b1-deb_cv1
2 versions - Latest release: almost 5 years ago - 9.92 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/autodock-vina v1.1.2-5b1-deb_cv1
2 versions - Latest release: almost 5 years ago - 9.92 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/barrnap v0.9dfsg-1-deb_cv1
2 versions - Latest release: almost 5 years ago - 9.9 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/aevol v5.0-2b1-deb_cv1
2 versions - Latest release: almost 5 years ago - 9.87 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/axe-demultiplexer v0.3.3dfsg-1-deb_cv1
2 versions - Latest release: almost 5 years ago - 9.86 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/aragorn v1.2.38-2-deb_cv1
2 versions - Latest release: almost 5 years ago - 9.85 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/anfo v0.98-7-deb_cv1
2 versions - Latest release: almost 5 years ago - 9.85 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/adun.app v0.81-13-deb_cv1
2 versions - Latest release: almost 5 years ago - 9.85 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/acedb-other-dotter v4.9.39dfsg.02-4-deb_cv1
2 versions - Latest release: almost 5 years ago - 9.84 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/bio-tradis v1.4.1dfsg-1-deb_cv1
2 versions - Latest release: almost 5 years ago - 9.83 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/aghermann v1.1.2-2-deb_cv1
2 versions - Latest release: almost 5 years ago - 9.83 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/ball v1.5.0git20180813.37fc53c-3-deb-py2_cv1
2 versions - Latest release: almost 5 years ago - 9.81 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/bio-rainbow v2.0.4dfsg-1-deb_cv1
2 versions - Latest release: almost 5 years ago - 9.8 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/berkeley-express v1.5.2dfsg-1b2-deb_cv1
2 versions - Latest release: almost 5 years ago - 9.77 thousand downloads total