Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

hub.docker.com namespaces: biocontainers

Top 1.4% on hub.docker.com
biocontainers/spectra-cluster-cli vv1.1.2_cv1
PRIDE Cluster algorithm to cluster heterogeneous mass spectra
7 versions - Latest release: over 5 years ago - 1.31 thousand downloads total - 634 stars on GitHub
Top 1.2% on hub.docker.com
biocontainers/peptideprophet v201510131012_cv3
Peptide assignment statistics and validation
4 versions - Latest release: almost 5 years ago - 2.53 thousand downloads total - 634 stars on GitHub
Top 0.5% on hub.docker.com
biocontainers/bwa 0.7.15
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
12 versions - Latest release: about 6 years ago - 1 dependent repositories - 53.6 thousand downloads total - 634 stars on GitHub
Top 0.6% on hub.docker.com
biocontainers/bedtools 2.25.0
a powerful toolset for genome arithmetic
9 versions - Latest release: about 6 years ago - 211 thousand downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/peptideshaker 1.10.3
interpretation of proteomics identification results
10 versions - Latest release: about 6 years ago - 1.12 thousand downloads total - 634 stars on GitHub
Top 0.3% on hub.docker.com
biocontainers/bcftools 1.3.1
variant calling and manipulating VCFs and BCFs
8 versions - Latest release: over 6 years ago - 1 dependent repositories - 1.03 million downloads total - 634 stars on GitHub
Top 1.3% on hub.docker.com
biocontainers/dia-umpire 2.1.2
computational analysis of DIA mass spectrometry-based proteomics data
6 versions - Latest release: about 6 years ago - 1.59 thousand downloads total - 634 stars on GitHub
Top 0.2% on hub.docker.com
biocontainers/samtools 1.3.1
Tools for manipulating next-generation sequencing data
14 versions - Latest release: about 6 years ago - 1 dependent repositories - 505 thousand downloads total - 634 stars on GitHub
Top 1.2% on hub.docker.com
biocontainers/openms 2.2.0_cv6
C++ libraries ans tools for MS/MS data analysis
8 versions - Latest release: 2 months ago - 3.2 thousand downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/denovogui 1.10.4
graphical user interface for de novo sequencing of tandem mass spectra
8 versions - Latest release: about 6 years ago - 1.04 thousand downloads total - 634 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/percolator v3.0_cv4
Semi-supervised learning for peptide identification from shotgun proteomics datasets
4 versions - Latest release: over 5 years ago - 952 downloads total - 634 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/cava 1.1.1
lightweight, fast and flexible NGS variant annotation tool
3 versions - Latest release: about 6 years ago - 877 downloads total - 634 stars on GitHub
Top 1.3% on hub.docker.com
biocontainers/proteinprophet v201510131012_cv4
Protein inference for MS/MS analysis
4 versions - Latest release: almost 5 years ago - 1.79 thousand downloads total - 634 stars on GitHub
Top 1.9% on hub.docker.com
biocontainers/pepnovop 20120423
de novo sequencing of low precision MS/MS data
1 version - Latest release: about 6 years ago - 221 downloads total - 634 stars on GitHub
Top 0.2% on hub.docker.com
biocontainers/biocontainers debian-buster-backports_cv2
Biocontainers base Image
15 versions - Latest release: 6 months ago - 17 dependent repositories - 300 thousand downloads total - 634 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/proteowizard v3_0_9740_cv2
tools and software libraries that facilitate proteomics data analysis
3 versions - Latest release: over 5 years ago - 640 downloads total - 634 stars on GitHub
Top 0.4% on hub.docker.com
biocontainers/bamtools 2.4.0
C++ API & command-line toolkit for working with BAM data
8 versions - Latest release: about 6 years ago - 1 dependent repositories - 15.8 thousand downloads total - 634 stars on GitHub
Top 0.4% on hub.docker.com
biocontainers/tpp v5.2_cv1
a collection of integrated tools for MS/MS proteomics
7 versions - Latest release: about 5 years ago - 1 dependent repositories - 11.1 thousand downloads total - 634 stars on GitHub
Top 0.8% on hub.docker.com
biocontainers/xtandem 15-12-15-2
software that can match tandem mass spectra with peptide sequences
2 versions - Latest release: about 6 years ago - 18 thousand downloads total - 634 stars on GitHub
Top 1.3% on hub.docker.com
biocontainers/clustal-omega v1.2.1_cv5
general purpose multiple sequence alignment program for proteins
3 versions - Latest release: over 5 years ago - 1.96 thousand downloads total - 634 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/novor v1b_cv5
real-time peptide de novo sequencing
4 versions - Latest release: over 5 years ago - 970 downloads total - 634 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/msamanda v1.0.0.5242_cv4
scoring system to identify peptides out of tandem mass spectrometry
4 versions - Latest release: over 5 years ago - 564 downloads total - 634 stars on GitHub
Top 0.3% on hub.docker.com
biocontainers/picard 2.3.0
Java CLI tools for manipulating HTS data and formats
9 versions - Latest release: about 6 years ago - 1 dependent repositories - 39.1 thousand downloads total - 620 stars on GitHub
Top 1.6% on hub.docker.com
biocontainers/saintq 0.0.2
assigning confidence scores to protein-protein interactions based on quantitative proteomics
3 versions - Latest release: about 6 years ago - 809 downloads total - 620 stars on GitHub
Top 0.7% on hub.docker.com
biocontainers/comet v2016011_cv5
an open source tandem mass spectrometry sequence database search tool
22 versions - Latest release: almost 5 years ago - 50.8 thousand downloads total - 620 stars on GitHub
Top 8.7% on hub.docker.com
biocontainers/bamutils
programs that perform operations on SAM/BAM files
Latest release: 12 days ago - 7 downloads total - 620 stars on GitHub
biocontainers/allpathslg
whole‐genome shotgun assembler that can generate high‐quality genome assemblies using short reads
Latest release: 10 days ago - 3 downloads total - 620 stars on GitHub
Top 0.3% on hub.docker.com
biocontainers/bowtie2 2.2.9
an ultrafast memory-efficient short read aligner
12 versions - Latest release: about 6 years ago - 1 dependent repositories - 69.9 thousand downloads total - 620 stars on GitHub
Top 2.3% on hub.docker.com
biocontainers/toppas v1.11.1-3_cv3
a graphical workflow editor for the analysis of high-throughput proteomics data
1 version - Latest release: over 5 years ago - 100 downloads total - 620 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/searchgui 2.8.6
graphical user interface for proteomics identification search engines
6 versions - Latest release: about 6 years ago - 1.01 thousand downloads total - 620 stars on GitHub
Top 0.9% on hub.docker.com
biocontainers/bowtie 1.1.2
an ultrafast memory-efficient short read aligner
5 versions - Latest release: about 6 years ago - 10.4 thousand downloads total - 620 stars on GitHub
Top 1.6% on hub.docker.com
biocontainers/crux v3.2_cv3
a software toolkit for tandem mass spectrometry analysis
4 versions - Latest release: over 5 years ago - 504 downloads total - 620 stars on GitHub
biocontainers/pia-web-server
Web server for PIA - Protein Inference Algorithms
Latest release: about 2 months ago - 1 downloads total - 620 stars on GitHub
Top 0.6% on hub.docker.com
biocontainers/emboss 6.5.7
software analysis package
5 versions - Latest release: about 6 years ago - 217 thousand downloads total - 620 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/pia v1.3.0_cv2
Compile PIA XML files and run pipelines with this image
5 versions - Latest release: over 5 years ago - 1.06 thousand downloads total - 620 stars on GitHub
Top 0.7% on hub.docker.com
biocontainers/blast 2.2.31
basic local alignment search tool
5 versions - Latest release: about 6 years ago - 78.6 thousand downloads total - 620 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/msgfp v9949_cv4
MS/MS database search tool
4 versions - Latest release: over 5 years ago - 1.07 thousand downloads total - 620 stars on GitHub
Top 0.6% on hub.docker.com
biocontainers/vcftools 0.1.15
"tools written in Perl and C++ for working with VCF files
7 versions - Latest release: about 6 years ago - 167 thousand downloads total - 620 stars on GitHub
Top 0.4% on hub.docker.com
biocontainers/abyss 1.9.0
ABySS is a *de novo* sequence assembler
5 versions - Latest release: about 6 years ago - 1 dependent repositories - 12.1 thousand downloads total - 620 stars on GitHub
Top 2.3% on hub.docker.com
biocontainers/ipo develop
A Tool for automated Optimization of XCMS Parameters
3 versions - Latest release: almost 6 years ago - 970 downloads total - 1 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/batman phenomenal-v1.2.12.0_cv1.1.72
Bayesian Automated Metabolite Analyser for NMR spectra (BATMAN).
2 versions - Latest release: about 6 years ago - 1.01 thousand downloads total - 0 stars on GitHub
Top 3.0% on hub.docker.com
biocontainers/ramid phenomenal-v1.0_cv1.0.18
R-program to read CDF files created by mass spectrometry and evaluate the MS 13C-labeled metabolites
3 versions - Latest release: almost 6 years ago - 537 downloads total - 0 stars on GitHub
Top 2.0% on hub.docker.com
biocontainers/biosigner phenomenal-v2.2.8_cv1.4.26
Discovery of significant signatures from omics data.
7 versions - Latest release: almost 6 years ago - 224 downloads total - 0 stars on GitHub
Top 1.6% on hub.docker.com
biocontainers/stacks v2.2dfsg-1-deb_cv1
3 versions - Latest release: over 4 years ago - 7.57 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/treeview v1.1.6.4dfsg1-4-deb_cv1
2 versions - Latest release: over 4 years ago - 7.44 thousand downloads total
Top 8.4% on hub.docker.com
biocontainers/seaborn 0.12.2_cv1
1 version - Latest release: about 1 year ago - 4.28 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/fitbit v0.3.0-4-deb-py2_cv1
3 versions - Latest release: over 4 years ago - 17.1 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/gbrowse-data v2.56dfsg-4-deb_cv1
2 versions - Latest release: over 4 years ago - 8.82 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/murasaki-common v1.68.6-8-deb_cv1
2 versions - Latest release: over 4 years ago - 7.56 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/dicom3tools v1.0020180803063840-1-deb_cv1
2 versions - Latest release: over 4 years ago - 8.44 thousand downloads total
Top 3.0% on hub.docker.com
biocontainers/bioconductor-interactivedisplaybase v1.12.0-1-deb_cv1
1 version - Latest release: almost 6 years ago - 523 downloads total
Top 1.5% on hub.docker.com
biocontainers/gubbins v2.3.4-1-deb_cv1
2 versions - Latest release: over 4 years ago - 8.52 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/primer3 v2.4.0-2-deb_cv1
2 versions - Latest release: over 4 years ago - 8.04 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/gemma v0.98.1dfsg-1-deb_cv1
1 version - Latest release: over 4 years ago - 9.95 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/gwyddion-common v2.52-1-deb_cv1
2 versions - Latest release: over 4 years ago - 8.08 thousand downloads total
Top 2.4% on hub.docker.com
biocontainers/snpeff v4.1k_cv3
3 versions - Latest release: almost 5 years ago - 1.29 thousand downloads total
Top 6.1% on hub.docker.com
biocontainers/python-screed v0.9-2-deb_cv1
1 version - Latest release: about 6 years ago - 23 downloads total
Top 1.6% on hub.docker.com
biocontainers/profnet-chop v1.0.22-6-deb_cv1
2 versions - Latest release: over 4 years ago - 7.5 thousand downloads total
Top 3.4% on hub.docker.com
biocontainers/pwiz-i-agree-to-the-vendor-licenses phenomenal-v3.0.18205_cv1.3.58
1 version - Latest release: almost 6 years ago - 422 downloads total
Top 1.6% on hub.docker.com
biocontainers/vtk-dicom v0.8.9-1-deb-py3_cv1
2 versions - Latest release: over 4 years ago - 7.48 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/gwyddion-plugins v2.52-1-deb_cv1
2 versions - Latest release: over 4 years ago - 8.43 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/dialign-tx v1.0.2-12-deb_cv1
2 versions - Latest release: over 4 years ago - 8.81 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/augustus v3.3.2dfsg-2-deb_cv1
2 versions - Latest release: almost 5 years ago - 10.5 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/sumaclust v1.0.31-2-deb_cv1
2 versions - Latest release: over 4 years ago - 7.87 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/orthanc-dicomweb v0.6dfsg-1-deb_cv1
2 versions - Latest release: over 4 years ago - 7.73 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/pbalign v0.3.2-1-deb_cv1
4 versions - Latest release: over 4 years ago - 15.1 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/sim4db v020150903r2013-6-deb_cv1
2 versions - Latest release: over 4 years ago - 7.88 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/lambda-align v1.0.3-5-deb_cv1
2 versions - Latest release: over 4 years ago - 8.28 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/tracetuner v3.0.6betadfsg-1-deb_cv1
1 version - Latest release: over 4 years ago - 7.42 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/pymummer v0.10.3-2-deb-py3_cv1
2 versions - Latest release: over 4 years ago - 8.09 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/ffindex v0.9.9.9-2-deb_cv1
2 versions - Latest release: over 4 years ago - 8.46 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/circlator v1.5.5-3-deb_cv1
2 versions - Latest release: over 4 years ago - 8.57 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/genometools v1.5.10ds-3-deb_cv1
4 versions - Latest release: over 4 years ago - 16.6 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/centrifuge v1.0.3-2-deb_cv1
1 version - Latest release: over 4 years ago - 8.92 thousand downloads total
Top 2.7% on hub.docker.com
biocontainers/tophat v2.1.1_cv3
3 versions - Latest release: almost 5 years ago - 452 downloads total
Top 1.6% on hub.docker.com
biocontainers/runcircos-gui v0.0git20180828.97703b9-1-deb_cv1
2 versions - Latest release: over 4 years ago - 7.46 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/mypy v0.670-2-deb_cv1
3 versions - Latest release: over 4 years ago - 15.4 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/profnet-norsnet v1.0.22-6-deb_cv1
2 versions - Latest release: over 4 years ago - 7.46 thousand downloads total
Top 1.9% on hub.docker.com
biocontainers/jenkins_version latest
1 version - Latest release: about 5 years ago - 2.76 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/paleomix v1.2.13.3-1-deb_cv1
1 version - Latest release: over 4 years ago - 7.51 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/pcalendar v3.4.1-3-deb_cv1
2 versions - Latest release: over 4 years ago - 7.95 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/pyvcf v0.6.8git20170215.476169c-1-deb_cv1
6 versions - Latest release: over 4 years ago - 22.6 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/xopen v0.5.0-2-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 15.3 thousand downloads total
Top 1.2% on hub.docker.com
biocontainers/eido 0.1.9_cv2
4 versions - Latest release: over 1 year ago - 29.5 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/prottest v3.4.2dfsg-3-deb_cv1
2 versions - Latest release: over 4 years ago - 7.5 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/raxml v8.2.12dfsg-1-deb_cv1
2 versions - Latest release: over 4 years ago - 8.01 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/abacas v1.3.1-5-deb_cv1
2 versions - Latest release: almost 5 years ago - 19.4 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/sofa-data v1.0beta4-12-deb_cv1
2 versions - Latest release: over 4 years ago - 7.87 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/staden-common v2.0.0b11-4-deb_cv1
2 versions - Latest release: over 4 years ago - 7.48 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/beast-mcmc v1.10.4dfsg-1-deb_cv1
2 versions - Latest release: almost 5 years ago - 9.55 thousand downloads total
Top 3.5% on hub.docker.com
biocontainers/python3-dictobj v0.4-1-deb_cv1
1 version - Latest release: about 6 years ago - 403 downloads total
Top 1.5% on hub.docker.com
biocontainers/ea-utils v1.1.2dfsg-5-deb_cv1
2 versions - Latest release: over 4 years ago - 8.47 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/galileo-daemon v0.5.1-6-deb_cv1
2 versions - Latest release: over 4 years ago - 8.43 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/sumtrees v4.4.0-1-deb_cv1
2 versions - Latest release: over 4 years ago - 7.48 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/sqlsoup v0.9.1-3-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 15 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/staden v2.0.0b11-4-deb_cv1
2 versions - Latest release: over 4 years ago - 7.49 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/camitk-actionstatemachine v4.1.2-3-deb_cv1
2 versions - Latest release: over 4 years ago - 8.47 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/velvet-long v1.2.10dfsg1-5-deb_cv1
2 versions - Latest release: over 4 years ago - 7.45 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/cycle v0.3.1-14-deb_cv1
1 version - Latest release: over 4 years ago - 8.42 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/probalign v1.4-8-deb_cv1
2 versions - Latest release: over 4 years ago - 7.48 thousand downloads total