Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

hub.docker.com namespaces: biocontainers

Top 0.7% on hub.docker.com
biocontainers/comet v2016011_cv5
an open source tandem mass spectrometry sequence database search tool
22 versions - Latest release: almost 5 years ago - 50.8 thousand downloads total - 620 stars on GitHub
Top 0.2% on hub.docker.com
biocontainers/biocontainers debian-buster-backports_cv2
Biocontainers base Image
15 versions - Latest release: 6 months ago - 17 dependent repositories - 300 thousand downloads total - 634 stars on GitHub
Top 0.2% on hub.docker.com
biocontainers/samtools 1.3.1
Tools for manipulating next-generation sequencing data
14 versions - Latest release: about 6 years ago - 1 dependent repositories - 505 thousand downloads total - 634 stars on GitHub
Top 2.5% on hub.docker.com
biocontainers/mzquality phenomenal-v0.9.5_cv0.9.5.15
12 versions - Latest release: almost 6 years ago - 852 downloads total
Top 0.3% on hub.docker.com
biocontainers/bowtie2 2.2.9
an ultrafast memory-efficient short read aligner
12 versions - Latest release: about 6 years ago - 1 dependent repositories - 69.9 thousand downloads total - 620 stars on GitHub
Top 0.5% on hub.docker.com
biocontainers/bwa 0.7.15
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
12 versions - Latest release: about 6 years ago - 1 dependent repositories - 53.6 thousand downloads total - 634 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/test-ci v0.0.2
11 versions - Latest release: about 6 years ago - 11.3 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/peptideshaker 1.10.3
interpretation of proteomics identification results
10 versions - Latest release: about 6 years ago - 1.12 thousand downloads total - 634 stars on GitHub
Top 0.3% on hub.docker.com
biocontainers/picard 2.3.0
Java CLI tools for manipulating HTS data and formats
9 versions - Latest release: about 6 years ago - 1 dependent repositories - 39.1 thousand downloads total - 620 stars on GitHub
Top 0.6% on hub.docker.com
biocontainers/bedtools 2.25.0
a powerful toolset for genome arithmetic
9 versions - Latest release: about 6 years ago - 211 thousand downloads total - 634 stars on GitHub
Top 1.1% on hub.docker.com
biocontainers/talon v5.0_cv1
9 versions - Latest release: about 4 years ago - 66.4 thousand downloads total
Top 0.4% on hub.docker.com
biocontainers/bamtools 2.4.0
C++ API & command-line toolkit for working with BAM data
8 versions - Latest release: about 6 years ago - 1 dependent repositories - 15.8 thousand downloads total - 634 stars on GitHub
Top 1.2% on hub.docker.com
biocontainers/openms 2.2.0_cv6
C++ libraries ans tools for MS/MS data analysis
8 versions - Latest release: 2 months ago - 3.2 thousand downloads total - 634 stars on GitHub
Top 0.3% on hub.docker.com
biocontainers/bcftools 1.3.1
variant calling and manipulating VCFs and BCFs
8 versions - Latest release: over 6 years ago - 1 dependent repositories - 1.03 million downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/denovogui 1.10.4
graphical user interface for de novo sequencing of tandem mass spectra
8 versions - Latest release: about 6 years ago - 1.04 thousand downloads total - 634 stars on GitHub
Top 0.4% on hub.docker.com
biocontainers/tpp v5.2_cv1
a collection of integrated tools for MS/MS proteomics
7 versions - Latest release: about 5 years ago - 1 dependent repositories - 11.1 thousand downloads total - 634 stars on GitHub
Top 2.0% on hub.docker.com
biocontainers/biosigner phenomenal-v2.2.8_cv1.4.26
Discovery of significant signatures from omics data.
7 versions - Latest release: almost 6 years ago - 224 downloads total - 0 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/spectra-cluster-cli vv1.1.2_cv1
PRIDE Cluster algorithm to cluster heterogeneous mass spectra
7 versions - Latest release: over 5 years ago - 1.31 thousand downloads total - 634 stars on GitHub
Top 0.6% on hub.docker.com
biocontainers/vcftools 0.1.15
"tools written in Perl and C++ for working with VCF files
7 versions - Latest release: about 6 years ago - 167 thousand downloads total - 620 stars on GitHub
Top 1.6% on hub.docker.com
biocontainers/spades v3.13.0dfsg2-2-deb_cv1
6 versions - Latest release: over 4 years ago - 8.2 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/searchgui 2.8.6
graphical user interface for proteomics identification search engines
6 versions - Latest release: about 6 years ago - 1.01 thousand downloads total - 620 stars on GitHub
Top 2.0% on hub.docker.com
biocontainers/tandem v10-12-01-1_cv3
6 versions - Latest release: over 5 years ago - 2.02 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/cellpose 3.0.1_cv1
6 versions - Latest release: 3 months ago - 15.1 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/dia-umpire 2.1.2
computational analysis of DIA mass spectrometry-based proteomics data
6 versions - Latest release: about 6 years ago - 1.59 thousand downloads total - 634 stars on GitHub
Top 1.3% on hub.docker.com
biocontainers/fast5 v0.6.5-2b1-deb-py3_cv1
6 versions - Latest release: over 4 years ago - 25.3 thousand downloads total
Top 1.2% on hub.docker.com
biocontainers/cutadapt v1.18-1-deb-py3_cv1
6 versions - Latest release: over 4 years ago - 26.1 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/pyvcf v0.6.8git20170215.476169c-1-deb_cv1
6 versions - Latest release: over 4 years ago - 22.6 thousand downloads total
Top 1.0% on hub.docker.com
biocontainers/soapdenovo v1.05-5-deb_cv1
a short-read assembly method for de novo draft assembly for the human-sized genomes
5 versions - Latest release: over 4 years ago - 8.05 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/jellyfish v2.2.10-2-deb_cv1
5 versions - Latest release: over 4 years ago - 8.98 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/odil v0.10.0-3-deb-py3_cv1
5 versions - Latest release: over 4 years ago - 22.6 thousand downloads total
Top 2.6% on hub.docker.com
biocontainers/velvet v1.2.10_cv3
5 versions - Latest release: almost 5 years ago - 472 downloads total
Top 1.3% on hub.docker.com
biocontainers/freecontact v1.1-4-deb-py2_cv1
5 versions - Latest release: over 4 years ago - 25.6 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/pia v1.3.0_cv2
Compile PIA XML files and run pipelines with this image
5 versions - Latest release: over 5 years ago - 1.06 thousand downloads total - 620 stars on GitHub
Top 0.9% on hub.docker.com
biocontainers/bowtie 1.1.2
an ultrafast memory-efficient short read aligner
5 versions - Latest release: about 6 years ago - 10.4 thousand downloads total - 620 stars on GitHub
Top 0.6% on hub.docker.com
biocontainers/emboss 6.5.7
software analysis package
5 versions - Latest release: about 6 years ago - 217 thousand downloads total - 620 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/sga v0.10.15-4-deb_cv1
5 versions - Latest release: over 4 years ago - 8.59 thousand downloads total
Top 0.4% on hub.docker.com
biocontainers/abyss 1.9.0
ABySS is a *de novo* sequence assembler
5 versions - Latest release: about 6 years ago - 1 dependent repositories - 12.1 thousand downloads total - 620 stars on GitHub
Top 0.7% on hub.docker.com
biocontainers/blast 2.2.31
basic local alignment search tool
5 versions - Latest release: about 6 years ago - 78.6 thousand downloads total - 620 stars on GitHub
Top 1.3% on hub.docker.com
biocontainers/csb v1.2.5dfsg-3-deb-py3_cv1
5 versions - Latest release: over 4 years ago - 25.4 thousand downloads total
Top 0.7% on hub.docker.com
biocontainers/biopython v1.73dfsg-1-deb-py3_cv1
4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 20.9 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/bz2file v0.98-2-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 17.4 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/kineticstools v0.6.1git20180425.27a1878-2-deb_cv1
4 versions - Latest release: over 4 years ago - 15.8 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/ngs v2.9.3-1-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 15.1 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/xopen v0.5.0-2-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 15.3 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/novor v1b_cv5
real-time peptide de novo sequencing
4 versions - Latest release: over 5 years ago - 970 downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/multipletau v0.3.3ds-1-deb-py2_cv1
4 versions - Latest release: over 4 years ago - 15.1 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/genometools v1.5.10ds-3-deb_cv1
4 versions - Latest release: over 4 years ago - 16.6 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/sqlsoup v0.9.1-3-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 15 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/pbalign v0.3.2-1-deb_cv1
4 versions - Latest release: over 4 years ago - 15.1 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/openslide v1.1.1-4-deb-py2_cv1
4 versions - Latest release: over 4 years ago - 15.1 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/rdflib-jsonld v0.4.0-4-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 15 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/pbconsensuscore v1.1.1dfsg-1-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 15.5 thousand downloads total
Top 1.2% on hub.docker.com
biocontainers/eido 0.1.9_cv2
4 versions - Latest release: over 1 year ago - 29.5 thousand downloads total
Top 1.9% on hub.docker.com
biocontainers/diann 1.8.1_cv2
4 versions - Latest release: 4 months ago - 22.6 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/hl7 v0.3.4-3-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 16.5 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/msamanda v1.0.0.5242_cv4
scoring system to identify peptides out of tandem mass spectrometry
4 versions - Latest release: over 5 years ago - 564 downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/ruffus v2.8.1-4-deb-py2_cv1
4 versions - Latest release: over 4 years ago - 15.4 thousand downloads total
Top 1.6% on hub.docker.com
biocontainers/crux v3.2_cv3
a software toolkit for tandem mass spectrometry analysis
4 versions - Latest release: over 5 years ago - 504 downloads total - 620 stars on GitHub
Top 1.2% on hub.docker.com
biocontainers/peptideprophet v201510131012_cv3
Peptide assignment statistics and validation
4 versions - Latest release: almost 5 years ago - 2.53 thousand downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/pbgenomicconsensus v2.3.2-5-deb_cv1
4 versions - Latest release: over 4 years ago - 15.5 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/proteinprophet v201510131012_cv4
Protein inference for MS/MS analysis
4 versions - Latest release: almost 5 years ago - 1.79 thousand downloads total - 634 stars on GitHub
Top 1.5% on hub.docker.com
biocontainers/percolator v3.0_cv4
Semi-supervised learning for peptide identification from shotgun proteomics datasets
4 versions - Latest release: over 5 years ago - 952 downloads total - 634 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/pyfaidx v0.5.5.2-1-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 15.3 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/pbh5tools v0.8.0git20170929.58d54ffdfsg-1-deb-py2_cv1
4 versions - Latest release: over 4 years ago - 15.5 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/dendropy v4.4.0-1-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 16.9 thousand downloads total
Top 1.4% on hub.docker.com
biocontainers/msgfp v9949_cv4
MS/MS database search tool
4 versions - Latest release: over 5 years ago - 1.07 thousand downloads total - 620 stars on GitHub
Top 1.4% on hub.docker.com
biocontainers/mia v0.1.9-2b1-deb-py2_cv1
4 versions - Latest release: over 4 years ago - 15.2 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/avro v1.8.2dfsg-2-deb-py2_cv1
4 versions - Latest release: almost 5 years ago - 18.9 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/biom-format v2.1.7dfsg-2-deb-py3_cv1
4 versions - Latest release: almost 5 years ago - 19 thousand downloads total
Top 1.3% on hub.docker.com
biocontainers/pysam v0.15.2ds-2-deb-py3_cv1
4 versions - Latest release: over 4 years ago - 18.6 thousand downloads total
Top 3.0% on hub.docker.com
biocontainers/raremetalworker v4.13.7_cv3
3 versions - Latest release: almost 5 years ago - 241 downloads total
Top 1.6% on hub.docker.com
biocontainers/stacks v2.2dfsg-1-deb_cv1
3 versions - Latest release: over 4 years ago - 7.57 thousand downloads total
Top 3.0% on hub.docker.com
biocontainers/seq_crumbs v0.1.9_cv3
3 versions - Latest release: almost 5 years ago - 232 downloads total
Top 1.3% on hub.docker.com
biocontainers/fitbit v0.3.0-4-deb-py2_cv1
3 versions - Latest release: over 4 years ago - 17.1 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/acedb-other-belvu v4.9.39dfsg.02-4-deb_cv1
3 versions - Latest release: almost 5 years ago - 10 thousand downloads total
Top 2.4% on hub.docker.com
biocontainers/snpeff v4.1k_cv3
3 versions - Latest release: almost 5 years ago - 1.29 thousand downloads total
Top 2.5% on hub.docker.com
biocontainers/aliscore v2.0_cv4
3 versions - Latest release: almost 5 years ago - 809 downloads total
Top 1.3% on hub.docker.com
biocontainers/burrito v0.9.1-3-deb-py3_cv1
3 versions - Latest release: over 4 years ago - 18.3 thousand downloads total
Top 3.0% on hub.docker.com
biocontainers/gapcloser v1.12-r6_cv3
3 versions - Latest release: almost 5 years ago - 251 downloads total
Top 1.4% on hub.docker.com
biocontainers/alien-hunter v1.7-7-deb_cv2
3 versions - Latest release: over 2 years ago - 13.1 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/ballview v1.5.0git20180813.37fc53c-3-deb_cv1
3 versions - Latest release: almost 5 years ago - 9.98 thousand downloads total
Top 1.9% on hub.docker.com
biocontainers/autoclassweb v2.2.1_cv1
3 versions - Latest release: over 2 years ago - 2.94 thousand downloads total
Top 2.7% on hub.docker.com
biocontainers/entrez-direct v7.50.20171103_cv5
3 versions - Latest release: almost 5 years ago - 704 downloads total
Top 2.6% on hub.docker.com
biocontainers/danpos v2.2.2_cv3
3 versions - Latest release: almost 5 years ago - 755 downloads total
Top 3.0% on hub.docker.com
biocontainers/shotmap v1.0.0_cv3
3 versions - Latest release: almost 5 years ago - 243 downloads total
Top 2.7% on hub.docker.com
biocontainers/tophat v2.1.1_cv3
3 versions - Latest release: almost 5 years ago - 452 downloads total
Top 2.7% on hub.docker.com
biocontainers/ssaha2 v2.5.5_cv3
3 versions - Latest release: almost 5 years ago - 656 downloads total
Top 1.4% on hub.docker.com
biocontainers/mypy v0.670-2-deb_cv1
3 versions - Latest release: over 4 years ago - 15.4 thousand downloads total
Top 1.2% on hub.docker.com
biocontainers/transcriptclean v2.0.2_cv1
3 versions - Latest release: over 4 years ago - 28.1 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/cobra v0.14.1-1-deb-py3_cv1
3 versions - Latest release: over 4 years ago - 8.58 thousand downloads total
Top 4.2% on hub.docker.com
biocontainers/univariate phenomenal-v2.2.6_cv1.3.32
3 versions - Latest release: almost 6 years ago - 66 downloads total
Top 2.8% on hub.docker.com
biocontainers/frc_align v20150723_cv3
3 versions - Latest release: almost 5 years ago - 625 downloads total
Top 1.6% on hub.docker.com
biocontainers/screed v1.0-3-deb-py3_cv1
3 versions - Latest release: over 4 years ago - 7.55 thousand downloads total
Top 2.7% on hub.docker.com
biocontainers/gcta v1.24.7_cv3
3 versions - Latest release: almost 5 years ago - 655 downloads total
Top 2.5% on hub.docker.com
biocontainers/interproscan v5.30-69.0_cv3
3 versions - Latest release: almost 5 years ago - 643 downloads total
Top 3.0% on hub.docker.com
biocontainers/magicblast v1.3.0_cv5
3 versions - Latest release: almost 5 years ago - 252 downloads total
Top 1.5% on hub.docker.com
biocontainers/elastix v4.9.0-1-deb_cv1
3 versions - Latest release: over 4 years ago - 8.98 thousand downloads total
Top 1.5% on hub.docker.com
biocontainers/cava 1.1.1
lightweight, fast and flexible NGS variant annotation tool
3 versions - Latest release: about 6 years ago - 877 downloads total - 634 stars on GitHub
Top 2.6% on hub.docker.com
biocontainers/htslib v1.2.1_cv3
3 versions - Latest release: almost 5 years ago - 503 downloads total
Top 1.5% on hub.docker.com
biocontainers/proteowizard v3_0_9740_cv2
tools and software libraries that facilitate proteomics data analysis
3 versions - Latest release: over 5 years ago - 640 downloads total - 634 stars on GitHub