evolbioinfo
evolbioinfo/cd-hit v4.8.1
1 version - Latest release: over 3 years ago - 22 downloads total
Top 4.0% on hub.docker.com
5 versions - Latest release: almost 5 years ago - 125 downloads total
evolbioinfo/multiqc v1.10
Aggregate results from bioinformatics analyses across many samples into a single report5 versions - Latest release: almost 5 years ago - 125 downloads total
Top 6.4% on hub.docker.com
2 versions - Latest release: over 6 years ago - 43 downloads total
evolbioinfo/alfred v0.1.17
BAM Statistics, Feature Counting and Annotation https://gear.embl.de/alfred2 versions - Latest release: over 6 years ago - 43 downloads total
Top 5.4% on hub.docker.com
1 version - Latest release: almost 7 years ago - 36 downloads total
evolbioinfo/treewas v1.0
A phylogenetic tree-based approach to genome-wide association studies in microbes1 version - Latest release: almost 7 years ago - 36 downloads total
Top 4.2% on hub.docker.com
3 versions - Latest release: about 3 years ago - 108 downloads total
evolbioinfo/irma v1.0.3
IRMA: Iterative Refinement Meta-Assembler3 versions - Latest release: about 3 years ago - 108 downloads total
Top 3.4% on hub.docker.com
2 versions - Latest release: over 3 years ago - 298 downloads total
evolbioinfo/trimgalore v0.6.7
https://github.com/FelixKrueger/TrimGalore/2 versions - Latest release: over 3 years ago - 298 downloads total
Top 2.8% on hub.docker.com
2 versions - Latest release: almost 8 years ago - 693 downloads total
evolbioinfo/ngphylogeny-galaxy v0.1.0
This repository contains tools and workflows used in NGPhylogeny.fr via galaxy.2 versions - Latest release: almost 8 years ago - 693 downloads total
Top 4.6% on hub.docker.com
evolbioinfo/splicelauncher latest
1 version - Latest release: over 6 years ago - 83 downloads total
Top 5.1% on hub.docker.com
1 version - Latest release: over 7 years ago - 53 downloads total
evolbioinfo/paml v4.8a
PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using ML1 version - Latest release: over 7 years ago - 53 downloads total
Top 6.6% on hub.docker.com
evolbioinfo/haploconduct v0.2.1
1 version - Latest release: about 4 years ago - 37 downloads total
Top 2.4% on hub.docker.com
10 versions - Latest release: 12 months ago - 1.16 thousand downloads total
evolbioinfo/raxml-ng v1.2.2
RAxML Next Generation: faster, easier-to-use and more flexible10 versions - Latest release: 12 months ago - 1.16 thousand downloads total
Top 4.6% on hub.docker.com
2 versions - Latest release: almost 8 years ago - 78 downloads total
evolbioinfo/khmer v2.1.1
The khmer software for advanced biological sequencing data analysis2 versions - Latest release: almost 8 years ago - 78 downloads total
Top 2.4% on hub.docker.com
67 versions - Latest release: over 4 years ago - 1.4 thousand downloads total
evolbioinfo/pangolin v3.1.16
https://github.com/cov-lineages/pangolin67 versions - Latest release: over 4 years ago - 1.4 thousand downloads total
evolbioinfo/reseq 053b8d1
1 version - Latest release: over 2 years ago - 13 downloads total
Top 2.9% on hub.docker.com
2 versions - Latest release: almost 8 years ago - 305 downloads total
evolbioinfo/muscle v3.8.1551
MUSCLE multiple alignment software2 versions - Latest release: almost 8 years ago - 305 downloads total
Top 5.3% on hub.docker.com
1 version - Latest release: over 7 years ago - 52 downloads total
evolbioinfo/ptp v4bb2daf
PTP model for species delimitation (https://species.h-its.org/ptp/)1 version - Latest release: over 7 years ago - 52 downloads total
Top 6.0% on hub.docker.com
evolbioinfo/rappas v1.21
1 version - Latest release: almost 5 years ago - 29 downloads total
Top 8.1% on hub.docker.com
evolbioinfo/rna-seqc v1.1.9
2 versions - Latest release: over 3 years ago - 28 downloads total
Top 2.6% on hub.docker.com
4 versions - Latest release: almost 4 years ago - 627 downloads total
evolbioinfo/table2itol fa4b43c
The table2itol.R script makes it easy to generate iTOL annotations from spreadsheet files.4 versions - Latest release: almost 4 years ago - 627 downloads total
Top 3.9% on hub.docker.com
3 versions - Latest release: over 2 years ago - 126 downloads total
evolbioinfo/tqdist v1.0.2
a triplet and quartet distance library3 versions - Latest release: over 2 years ago - 126 downloads total
Top 6.6% on hub.docker.com
evolbioinfo/strainline 8af032906e
1 version - Latest release: about 4 years ago - 33 downloads total
Top 4.0% on hub.docker.com
4 versions - Latest release: over 2 years ago - 114 downloads total
evolbioinfo/bowtie2 v2.5.1
A fast and sensitive gapped read aligner4 versions - Latest release: over 2 years ago - 114 downloads total
Top 3.4% on hub.docker.com
3 versions - Latest release: 9 months ago - 546 downloads total
evolbioinfo/krakenuniq v1.0.4
KrakenUniq: confident and fast metagenomics classification using unique k-mer counts3 versions - Latest release: 9 months ago - 546 downloads total
Top 4.2% on hub.docker.com
4 versions - Latest release: over 3 years ago - 99 downloads total
evolbioinfo/spades v3.15.4
SPAdes is an assembly toolkit containing various assembly pipelines4 versions - Latest release: over 3 years ago - 99 downloads total
Top 4.7% on hub.docker.com
2 versions - Latest release: about 5 years ago - 68 downloads total
evolbioinfo/vamb 3.0.2
https://github.com/RasmussenLab/vamb2 versions - Latest release: about 5 years ago - 68 downloads total
Top 2.1% on hub.docker.com
6 versions - Latest release: almost 3 years ago - 1.87 thousand downloads total
evolbioinfo/python-ml v.3.11.2
Python 3.8 libraries for simple machine learning6 versions - Latest release: almost 3 years ago - 1.87 thousand downloads total
Top 3.2% on hub.docker.com
2 versions - Latest release: over 2 years ago - 342 downloads total
evolbioinfo/kraken v2.1.3
Taxonomic classification system using exact k-mer matches2 versions - Latest release: over 2 years ago - 342 downloads total
Top 5.1% on hub.docker.com
1 version - Latest release: about 8 years ago - 63 downloads total
evolbioinfo/predicthaplo v1.0
This software aims at reconstructing haplotypes from next-generation sequencing data.1 version - Latest release: about 8 years ago - 63 downloads total
Top 4.3% on hub.docker.com
1 version - Latest release: almost 8 years ago - 118 downloads total
evolbioinfo/pcoc v898c138
PCOC is a convergent substitution detection tool1 version - Latest release: almost 8 years ago - 118 downloads total
Top 4.4% on hub.docker.com
2 versions - Latest release: about 4 years ago - 96 downloads total
evolbioinfo/shorah v1.99.2
https://github.com/cbg-ethz/shorah/2 versions - Latest release: about 4 years ago - 96 downloads total
Top 5.3% on hub.docker.com
1 version - Latest release: about 5 years ago - 56 downloads total
evolbioinfo/damageprofiler v1.1
https://github.com/Integrative-Transcriptomics/DamageProfiler1 version - Latest release: about 5 years ago - 56 downloads total
Top 3.5% on hub.docker.com
4 versions - Latest release: almost 3 years ago - 176 downloads total
evolbioinfo/r-evol v4.2.2
r with ape and big.phylo packages4 versions - Latest release: almost 3 years ago - 176 downloads total
Top 2.1% on hub.docker.com
1 version - Latest release: almost 8 years ago - 1.82 thousand downloads total
evolbioinfo/newick_utilities v1.6
The Newick Utilities are a suite of Unix shell tools for processing phylogenetic trees1 version - Latest release: almost 8 years ago - 1.82 thousand downloads total
Top 5.2% on hub.docker.com
2 versions - Latest release: over 4 years ago - 53 downloads total
evolbioinfo/fastani v1.33
Fast Whole-Genome Similarity (ANI) Estimation2 versions - Latest release: over 4 years ago - 53 downloads total
Top 1.0% on hub.docker.com
9 versions - Latest release: almost 3 years ago - 72 thousand downloads total
evolbioinfo/minimap2 v2.26
A versatile pairwise aligner for genomic and spliced nucleotide sequences9 versions - Latest release: almost 3 years ago - 72 thousand downloads total
Top 6.3% on hub.docker.com
1 version - Latest release: over 6 years ago - 26 downloads total
evolbioinfo/indelible v1.03
A powerful and flexible simulator of biological evolution.1 version - Latest release: over 6 years ago - 26 downloads total
Top 3.6% on hub.docker.com
2 versions - Latest release: almost 8 years ago - 234 downloads total
evolbioinfo/booster-web v0.1.8
Web Interface to booster : booster.c3bi.pasteur.fr2 versions - Latest release: almost 8 years ago - 234 downloads total
evolbioinfo/condor v0.1
2 versions - Latest release: over 3 years ago - 34 downloads total
Top 3.0% on hub.docker.com
1 version - Latest release: almost 8 years ago - 249 downloads total
evolbioinfo/noisy v1.5.12
Noisy - identify homo-plastic characters in multiple sequence alignments1 version - Latest release: almost 8 years ago - 249 downloads total
Top 5.3% on hub.docker.com
1 version - Latest release: almost 7 years ago - 39 downloads total
evolbioinfo/savage v0.4.1
Strain Aware VirAl GEnome assembly1 version - Latest release: almost 7 years ago - 39 downloads total
Top 6.4% on hub.docker.com
1 version - Latest release: over 5 years ago - 31 downloads total
evolbioinfo/canu v2.0
A single molecule sequence assembler for genomes large and small1 version - Latest release: over 5 years ago - 31 downloads total
Top 3.4% on hub.docker.com
1 version - Latest release: almost 7 years ago - 144 downloads total
evolbioinfo/lastal v980
LAST: Genome-Scale Sequence Comparison1 version - Latest release: almost 7 years ago - 144 downloads total
Top 5.2% on hub.docker.com
1 version - Latest release: almost 8 years ago - 52 downloads total
evolbioinfo/musket v1.1
a multistage k-mer spectrum based corrector1 version - Latest release: almost 8 years ago - 52 downloads total
Top 6.6% on hub.docker.com
1 version - Latest release: over 3 years ago - 76 downloads total
evolbioinfo/schmutzi v1.5.6
schmutzi: Bayesian maximum a posteriori contamination estimate for ancient samples1 version - Latest release: over 3 years ago - 76 downloads total
Top 4.2% on hub.docker.com
evolbioinfo/fasrtme v2.1.6
4 versions - Latest release: almost 8 years ago - 97 downloads total
Top 2.5% on hub.docker.com
8 versions - Latest release: over 4 years ago - 1.09 thousand downloads total
evolbioinfo/ngphylogeny latest
A Django web application to facilitate Phylogenetic analyses8 versions - Latest release: over 4 years ago - 1.09 thousand downloads total
Top 3.7% on hub.docker.com
2 versions - Latest release: about 7 years ago - 127 downloads total
evolbioinfo/seq-gen v1.3.4
Seq-Gen is a program that will simulate the evolution of sequences along a phylogeny2 versions - Latest release: about 7 years ago - 127 downloads total
Top 3.5% on hub.docker.com
1 version - Latest release: over 4 years ago - 223 downloads total
evolbioinfo/admixture v1.3.0
maximum likelihood estimation of individual ancestries1 version - Latest release: over 4 years ago - 223 downloads total
Top 4.3% on hub.docker.com
evolbioinfo/treedater 89a0df0_bash
2 versions - Latest release: almost 7 years ago - 79 downloads total
Top 5.6% on hub.docker.com
evolbioinfo/emboss v6.6.0
1 version - Latest release: over 3 years ago - 99 downloads total
Top 3.2% on hub.docker.com
2 versions - Latest release: almost 5 years ago - 333 downloads total
evolbioinfo/ivar v1.3.1
https://github.com/andersen-lab/ivar2 versions - Latest release: almost 5 years ago - 333 downloads total
Top 2.1% on hub.docker.com
37 versions - Latest release: 9 months ago - 2.23 thousand downloads total
evolbioinfo/goalign v0.3.8
Goalign is a set of command line tools to manipulate multiple alignments37 versions - Latest release: 9 months ago - 2.23 thousand downloads total
Top 3.1% on hub.docker.com
8 versions - Latest release: over 1 year ago - 447 downloads total
evolbioinfo/r-extended v4.3.3
R 3.4.3 with packages: - ggplot2 - plyr - reshape2 - dplyr, tidyr8 versions - Latest release: over 1 year ago - 447 downloads total
Top 3.3% on hub.docker.com
3 versions - Latest release: about 8 years ago - 267 downloads total
evolbioinfo/perl v5.26.1
Perl 5 is a highly capable, feature-rich programming language with over 29 years of development3 versions - Latest release: about 8 years ago - 267 downloads total
Top 6.0% on hub.docker.com
evolbioinfo/papara v2.5
1 version - Latest release: almost 5 years ago - 31 downloads total
Top 2.4% on hub.docker.com
evolbioinfo/star v2.7.11a
5 versions - Latest release: about 2 years ago - 734 downloads total
Top 4.6% on hub.docker.com
1 version - Latest release: over 4 years ago - 69 downloads total
evolbioinfo/finestructure v4.1.1
FineSTRUCTURE is software to perform population assignment1 version - Latest release: over 4 years ago - 69 downloads total
Top 4.2% on hub.docker.com
evolbioinfo/mapdamage v2.2.1
1 version - Latest release: about 5 years ago - 93 downloads total
Top 6.1% on hub.docker.com
1 version - Latest release: about 6 years ago - 51 downloads total
evolbioinfo/treestructure a831a66
treestructure R package (Volz et al. bioRxiv 704528; doi: https://doi.org/10.1101/704528)1 version - Latest release: about 6 years ago - 51 downloads total
Top 2.8% on hub.docker.com
14 versions - Latest release: almost 3 years ago - 413 downloads total
evolbioinfo/lsd2 v2.4.1
LSD2: LEAST-SQUARES METHODS TO ESTIMATE RATES AND DATES FROM PHYLOGENIES14 versions - Latest release: almost 3 years ago - 413 downloads total
Top 2.2% on hub.docker.com
8 versions - Latest release: over 3 years ago - 7.69 thousand downloads total
evolbioinfo/samtools v1.16.1
Tools (written in C using htslib) for manipulating next-generation sequencing data8 versions - Latest release: over 3 years ago - 7.69 thousand downloads total
Top 5.9% on hub.docker.com
evolbioinfo/seqtk v1.3
1 version - Latest release: over 5 years ago - 31 downloads total
Top 2.2% on hub.docker.com
3 versions - Latest release: over 3 years ago - 1.25 thousand downloads total
evolbioinfo/sratoolkit v3.0.1
https://www.ncbi.nlm.nih.gov/sra/docs/toolkitsoft/3 versions - Latest release: over 3 years ago - 1.25 thousand downloads total
Top 6.0% on hub.docker.com
2 versions - Latest release: over 3 years ago - 37 downloads total
evolbioinfo/checkm v1.2.1
CheckM provides a set of tools for assessing the quality of genomes2 versions - Latest release: over 3 years ago - 37 downloads total
evolbioinfo/gofasta v1.2.1
3 versions - Latest release: over 2 years ago - 47 downloads total
Top 4.0% on hub.docker.com
1 version - Latest release: over 7 years ago - 132 downloads total
evolbioinfo/inkscape latest
Inkscape is an open-source vector graphics editor1 version - Latest release: over 7 years ago - 132 downloads total
Top 2.9% on hub.docker.com
1 version - Latest release: almost 8 years ago - 292 downloads total
evolbioinfo/bmge v1.12
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis1 version - Latest release: almost 8 years ago - 292 downloads total
Top 2.4% on hub.docker.com
5 versions - Latest release: over 5 years ago - 779 downloads total
evolbioinfo/fasttree v2.1.11
FastTree infers approx-max-likelihood phylogenetic trees from alignments of nt or aa sequences5 versions - Latest release: over 5 years ago - 779 downloads total
Top 2.9% on hub.docker.com
2 versions - Latest release: over 4 years ago - 325 downloads total
evolbioinfo/mrbayes v3.2.7
MrBayes is a program for Bayesian inference and model choice2 versions - Latest release: over 4 years ago - 325 downloads total
Top 5.2% on hub.docker.com
13 versions - Latest release: over 3 years ago - 408 downloads total
evolbioinfo/bdei v0.1.17
Birth-Death Infectious-Exposed Model parameter estimator13 versions - Latest release: over 3 years ago - 408 downloads total
Top 6.3% on hub.docker.com
1 version - Latest release: over 4 years ago - 27 downloads total
evolbioinfo/haplogrep v2.4.0
tool for mtDNA haplogroup classification1 version - Latest release: over 4 years ago - 27 downloads total
Top 2.7% on hub.docker.com
8 versions - Latest release: almost 8 years ago - 475 downloads total
evolbioinfo/fastme v2.1.6
FastME provides distance algorithms to infer phylogenies.8 versions - Latest release: almost 8 years ago - 475 downloads total
Top 4.8% on hub.docker.com
evolbioinfo/snakemake v5.6.0
1 version - Latest release: over 6 years ago - 64 downloads total
Top 4.8% on hub.docker.com
1 version - Latest release: almost 5 years ago - 57 downloads total
evolbioinfo/jq v1.6
lightweight and flexible command-line JSON processor1 version - Latest release: almost 5 years ago - 57 downloads total
Top 5.7% on hub.docker.com
evolbioinfo/bayestraits v5.0.0
3 versions - Latest release: 9 months ago - 82 downloads total
Top 2.7% on hub.docker.com
3 versions - Latest release: about 7 years ago - 467 downloads total
evolbioinfo/phyml-sms v1.8.1
SMS: Smart Model Selection in PhyML.3 versions - Latest release: about 7 years ago - 467 downloads total
Top 2.6% on hub.docker.com
evolbioinfo/subread v2.0.3
2 versions - Latest release: over 3 years ago - 462 downloads total
Top 5.6% on hub.docker.com
1 version - Latest release: over 5 years ago - 41 downloads total
evolbioinfo/nanoplot v1.29.1
Plotting tool for long read sequencing data and alignments.1 version - Latest release: over 5 years ago - 41 downloads total
Top 3.2% on hub.docker.com
6 versions - Latest release: about 4 years ago - 313 downloads total
evolbioinfo/treetime v0.8.5
Maximum likelihood dating and ancestral inference for phylogenetic trees6 versions - Latest release: about 4 years ago - 313 downloads total
Top 7.1% on hub.docker.com
evolbioinfo/artic-ncov2019 e814ed4
1 version - Latest release: over 3 years ago - 28 downloads total
Top 3.3% on hub.docker.com
1 version - Latest release: almost 7 years ago - 173 downloads total
evolbioinfo/minionqc v1.4.1
Quality control for MinION sequencing data1 version - Latest release: almost 7 years ago - 173 downloads total
Top 9.3% on hub.docker.com
evolbioinfo/bbmap v39.01
1 version - Latest release: over 3 years ago - 26 downloads total
Top 3.5% on hub.docker.com
3 versions - Latest release: over 1 year ago - 212 downloads total
evolbioinfo/ubuntu v24.04
Ubuntu is a Debian-based Linux operating system based on free software.3 versions - Latest release: over 1 year ago - 212 downloads total
Top 3.2% on hub.docker.com
2 versions - Latest release: almost 8 years ago - 278 downloads total
evolbioinfo/booster v0.1.2
BOOSTER is a new way of computing bootstrap supports in large phylogenies.2 versions - Latest release: almost 8 years ago - 278 downloads total
Top 3.4% on hub.docker.com
3 versions - Latest release: over 3 years ago - 198 downloads total
evolbioinfo/adapterremoval v2.3.3
https://github.com/MikkelSchubert/adapterremoval3 versions - Latest release: over 3 years ago - 198 downloads total
Top 2.5% on hub.docker.com
9 versions - Latest release: 6 months ago - 680 downloads total
evolbioinfo/mafft v7.467
Multiple alignment program for amino acid or nucleotide sequences9 versions - Latest release: 6 months ago - 680 downloads total
Top 7.5% on hub.docker.com
evolbioinfo/sra-tools v3.0.1
1 version - Latest release: over 2 years ago - 17 downloads total
Top 5.8% on hub.docker.com
evolbioinfo/wget v1.17.1
1 version - Latest release: over 6 years ago - 34 downloads total
Top 2.6% on hub.docker.com
1 version - Latest release: over 5 years ago - 702 downloads total
evolbioinfo/bwa v0.7.17
https://github.com/lh3/bwa/1 version - Latest release: over 5 years ago - 702 downloads total
Top 3.4% on hub.docker.com
1 version - Latest release: almost 6 years ago - 333 downloads total
evolbioinfo/covid-align latest
COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM1 version - Latest release: almost 6 years ago - 333 downloads total
Top 4.3% on hub.docker.com
12 versions - Latest release: over 3 years ago - 269 downloads total
evolbioinfo/phylodeep v0.3.1
Parameter estimation and model selection from phylogenetic trees, based on deep learning.12 versions - Latest release: over 3 years ago - 269 downloads total
Top 5.6% on hub.docker.com
2 versions - Latest release: almost 8 years ago - 46 downloads total
evolbioinfo/alien_trimmer v0.4.0
quickly and accurately trim off multiple short contaminant sequences from sequencing reads2 versions - Latest release: almost 8 years ago - 46 downloads total
evolbioinfo/catch v1.5.1
1 version - Latest release: about 3 years ago - 13 downloads total
Top 3.2% on hub.docker.com
8 versions - Latest release: almost 8 years ago - 409 downloads total
evolbioinfo/sdrmhunter v0.2.1
SDRM detection with sierrapy8 versions - Latest release: almost 8 years ago - 409 downloads total
Top 1.4% on hub.docker.com
evolbioinfo/python v3.8.2
2 versions - Latest release: almost 6 years ago - 1 dependent repositories - 986 downloads total
Top 6.0% on hub.docker.com
45 versions - Latest release: 5 months ago - 689 downloads total
evolbioinfo/treesimulator v0.2.23
Simulation of rooted phylogenetic trees under a given Multitype Birth–Death (MTBD) model.45 versions - Latest release: 5 months ago - 689 downloads total
Top 2.9% on hub.docker.com
7 versions - Latest release: about 8 years ago - 365 downloads total
evolbioinfo/raxml v8.2.11
https://github.com/stamatak/standard-RAxML7 versions - Latest release: about 8 years ago - 365 downloads total
Top 4.4% on hub.docker.com
2 versions - Latest release: almost 4 years ago - 102 downloads total
evolbioinfo/picard v2.27.0
https://github.com/broadinstitute/picard/2 versions - Latest release: almost 4 years ago - 102 downloads total
Top 2.8% on hub.docker.com
1 version - Latest release: about 8 years ago - 354 downloads total
evolbioinfo/gblocks v0.91b
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis1 version - Latest release: about 8 years ago - 354 downloads total
Top 5.5% on hub.docker.com
1 version - Latest release: over 6 years ago - 45 downloads total
evolbioinfo/guppy v3.1.5
Oxford Nanopore Technologies Guppy basecaller Software1 version - Latest release: over 6 years ago - 45 downloads total