Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

hub.docker.com namespaces: evolbioinfo

Top 2.9% on hub.docker.com
evolbioinfo/mrbayes v3.2.7
MrBayes is a program for Bayesian inference and model choice
2 versions - Latest release: over 2 years ago - 280 downloads total
Top 5.2% on hub.docker.com
evolbioinfo/r-sra v3.6.1
2 versions - Latest release: almost 5 years ago - 32 downloads total
Top 2.8% on hub.docker.com
evolbioinfo/clustal_omega v1.2.4
Clustal Omega is a new multiple sequence alignment program
2 versions - Latest release: about 6 years ago - 297 downloads total
Top 5.2% on hub.docker.com
evolbioinfo/fastani v1.33
Fast Whole-Genome Similarity (ANI) Estimation
2 versions - Latest release: over 2 years ago - 32 downloads total
Top 2.6% on hub.docker.com
evolbioinfo/bwa v0.7.17
https://github.com/lh3/bwa/
1 version - Latest release: over 3 years ago - 573 downloads total
Top 2.1% on hub.docker.com
evolbioinfo/newick_utilities v1.6
The Newick Utilities are a suite of Unix shell tools for processing phylogenetic trees
1 version - Latest release: about 6 years ago - 1.56 thousand downloads total
Top 4.0% on hub.docker.com
evolbioinfo/multiqc v1.10
Aggregate results from bioinformatics analyses across many samples into a single report
5 versions - Latest release: about 3 years ago - 92 downloads total
Top 4.7% on hub.docker.com
evolbioinfo/igv v2.9.0
2 versions - Latest release: over 3 years ago - 43 downloads total
Top 4.2% on hub.docker.com
evolbioinfo/lsd v0.3beta-55183ca9d0
LEAST-SQUARES METHODS TO ESTIMATE RATES AND DATES FROM SERIAL PHYLOGENIES - v0.3beta by Thu-Hien TO
1 version - Latest release: about 6 years ago - 61 downloads total
Top 2.6% on hub.docker.com
evolbioinfo/table2itol fa4b43c
The table2itol.R script makes it easy to generate iTOL annotations from spreadsheet files.
4 versions - Latest release: about 2 years ago - 489 downloads total
Top 6.4% on hub.docker.com
evolbioinfo/alfred v0.1.17
BAM Statistics, Feature Counting and Annotation https://gear.embl.de/alfred
2 versions - Latest release: over 4 years ago - 19 downloads total
Top 1.4% on hub.docker.com
evolbioinfo/python v3.8.2
2 versions - Latest release: about 4 years ago - 1 dependent repositories - 942 downloads total
Top 2.1% on hub.docker.com
evolbioinfo/python-ml v.3.11.2
Python 3.8 libraries for simple machine learning
6 versions - Latest release: about 1 year ago - 1.67 thousand downloads total
Top 6.1% on hub.docker.com
evolbioinfo/treestructure a831a66
treestructure R package (Volz et al. bioRxiv 704528; doi: https://doi.org/10.1101/704528)
1 version - Latest release: over 4 years ago - 20 downloads total
Top 5.4% on hub.docker.com
evolbioinfo/sphinx v1.8.5
Sphinx is a tool that makes it easy to create intelligent and beautiful documentation
2 versions - Latest release: about 4 years ago - 31 downloads total
Top 4.4% on hub.docker.com
evolbioinfo/picard v2.27.0
https://github.com/broadinstitute/picard/
2 versions - Latest release: about 2 years ago - 63 downloads total
Top 4.7% on hub.docker.com
evolbioinfo/lsd-web latest
Least-Squares Dating (LSD) estimates rates and dates from phylogenies using least-squares method
1 version - Latest release: over 5 years ago - 44 downloads total
Top 6.3% on hub.docker.com
evolbioinfo/indelible v1.03
A powerful and flexible simulator of biological evolution.
1 version - Latest release: over 4 years ago - 19 downloads total
Top 3.7% on hub.docker.com
evolbioinfo/seq-gen v1.3.4
Seq-Gen is a program that will simulate the evolution of sequences along a phylogeny
2 versions - Latest release: over 5 years ago - 105 downloads total
Top 2.7% on hub.docker.com
evolbioinfo/fastme v2.1.6
FastME provides distance algorithms to infer phylogenies.
8 versions - Latest release: about 6 years ago - 392 downloads total
Top 3.8% on hub.docker.com
evolbioinfo/pathphynder b8532c
https://github.com/ruidlpm/pathPhynder
2 versions - Latest release: almost 3 years ago - 90 downloads total
evolbioinfo/condor v0.1
2 versions - Latest release: over 1 year ago - 11 downloads total
Top 2.8% on hub.docker.com
evolbioinfo/gblocks v0.91b
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
1 version - Latest release: about 6 years ago - 331 downloads total
Top 3.4% on hub.docker.com
evolbioinfo/lastal v980
LAST: Genome-Scale Sequence Comparison
1 version - Latest release: almost 5 years ago - 131 downloads total
evolbioinfo/nanosim v3.1.0
1 version - Latest release: 7 months ago - 21 downloads total
Top 1.0% on hub.docker.com
evolbioinfo/minimap2 v2.26
A versatile pairwise aligner for genomic and spliced nucleotide sequences
9 versions - Latest release: about 1 year ago - 71.4 thousand downloads total
evolbioinfo/catch v1.5.1
1 version - Latest release: over 1 year ago - 6 downloads total
Top 5.6% on hub.docker.com
evolbioinfo/nanoplot v1.29.1
Plotting tool for long read sequencing data and alignments.
1 version - Latest release: almost 4 years ago - 26 downloads total
Top 3.4% on hub.docker.com
evolbioinfo/adapterremoval v2.3.3
https://github.com/MikkelSchubert/adapterremoval
3 versions - Latest release: over 1 year ago - 155 downloads total
Top 6.1% on hub.docker.com
evolbioinfo/polecat b4a36f3
https://artic-network.github.io/polecat/
1 version - Latest release: about 3 years ago - 20 downloads total
Top 9.3% on hub.docker.com
evolbioinfo/bbmap v39.01
1 version - Latest release: over 1 year ago - 13 downloads total
Top 3.6% on hub.docker.com
evolbioinfo/booster-web v0.1.8
Web Interface to booster : booster.c3bi.pasteur.fr
2 versions - Latest release: about 6 years ago - 112 downloads total
Top 2.5% on hub.docker.com
evolbioinfo/ngphylogeny latest
A Django web application to facilitate Phylogenetic analyses
8 versions - Latest release: almost 3 years ago - 553 downloads total
Top 3.7% on hub.docker.com
evolbioinfo/dsrc v2.0.2
1 version - Latest release: over 3 years ago - 123 downloads total
Top 4.6% on hub.docker.com
evolbioinfo/finestructure v4.1.1
FineSTRUCTURE is software to perform population assignment
1 version - Latest release: over 2 years ago - 47 downloads total
Top 5.3% on hub.docker.com
evolbioinfo/savage v0.4.1
Strain Aware VirAl GEnome assembly
1 version - Latest release: about 5 years ago - 30 downloads total
Top 3.6% on hub.docker.com
evolbioinfo/bcftools v1.10.2
4 versions - Latest release: almost 4 years ago - 126 downloads total
Top 4.0% on hub.docker.com
evolbioinfo/inkscape latest
Inkscape is an open-source vector graphics editor
1 version - Latest release: almost 6 years ago - 73 downloads total
Top 4.9% on hub.docker.com
evolbioinfo/epa-ng v0.3.8
https://github.com/Pbdas/epa-ng
1 version - Latest release: about 3 years ago - 50 downloads total
Top 2.4% on hub.docker.com
evolbioinfo/pangolin v3.1.16
https://github.com/cov-lineages/pangolin
60 versions - Latest release: over 2 years ago - 897 downloads total
Top 2.6% on hub.docker.com
evolbioinfo/phyml v3.3.20220408
PhyML -- Phylogenetic estimation using (Maximum) Likelihood
8 versions - Latest release: almost 2 years ago - 516 downloads total
Top 5.6% on hub.docker.com
evolbioinfo/alien_trimmer v0.4.0
quickly and accurately trim off multiple short contaminant sequences from sequencing reads
2 versions - Latest release: about 6 years ago - 28 downloads total
Top 2.0% on hub.docker.com
evolbioinfo/pastml v1.9.43
Ancestral character reconstruction and visualization for rooted phylogenetic trees
57 versions - Latest release: 2 months ago - 1.98 thousand downloads total
Top 3.2% on hub.docker.com
evolbioinfo/sdrmhunter v0.2.1
SDRM detection with sierrapy
8 versions - Latest release: about 6 years ago - 197 downloads total
Top 5.2% on hub.docker.com
evolbioinfo/musket v1.1
a multistage k-mer spectrum based corrector
1 version - Latest release: about 6 years ago - 32 downloads total
Top 3.5% on hub.docker.com
evolbioinfo/r-evol v4.2.2
r with ape and big.phylo packages
4 versions - Latest release: about 1 year ago - 128 downloads total
Top 4.2% on hub.docker.com
evolbioinfo/irma v1.0.3
IRMA: Iterative Refinement Meta-Assembler
3 versions - Latest release: over 1 year ago - 78 downloads total
Top 3.3% on hub.docker.com
evolbioinfo/perl v5.26.1
Perl 5 is a highly capable, feature-rich programming language with over 29 years of development
2 versions - Latest release: about 6 years ago - 187 downloads total
Top 6.0% on hub.docker.com
evolbioinfo/treesimulator v0.1.9
Simulation of rooted phylogenetic trees under a given Multitype Birth–Death (MTBD) model.
9 versions - Latest release: 4 months ago - 29 downloads total
Top 4.6% on hub.docker.com
evolbioinfo/splicelauncher latest
1 version - Latest release: almost 5 years ago - 45 downloads total
Top 4.4% on hub.docker.com
evolbioinfo/mash v1.0.2
Fast genome and metagenome distance estimation using MinHash
4 versions - Latest release: about 6 years ago - 55 downloads total
Top 1.6% on hub.docker.com
evolbioinfo/python-evol v3.8.2
Python3 with libraries useful for phylogenetical analyses
8 versions - Latest release: about 4 years ago - 1 dependent repositories - 807 downloads total
Top 3.5% on hub.docker.com
evolbioinfo/admixture v1.3.0
maximum likelihood estimation of individual ancestries
1 version - Latest release: over 2 years ago - 181 downloads total
Top 3.2% on hub.docker.com
evolbioinfo/booster v0.1.2
BOOSTER is a new way of computing bootstrap supports in large phylogenies.
2 versions - Latest release: about 6 years ago - 186 downloads total
Top 2.7% on hub.docker.com
evolbioinfo/phyml-sms v1.8.1
SMS: Smart Model Selection in PhyML.
3 versions - Latest release: over 5 years ago - 385 downloads total
Top 5.4% on hub.docker.com
evolbioinfo/treewas v1.0
A phylogenetic tree-based approach to genome-wide association studies in microbes
1 version - Latest release: almost 5 years ago - 30 downloads total
Top 7.7% on hub.docker.com
evolbioinfo/v3.1.17-2021-11-25-v0.3.15-v0.0.29-v1.2.110 latest
1 version - Latest release: over 2 years ago - 13 downloads total
Top 7.1% on hub.docker.com
evolbioinfo/artic-ncov2019 e814ed4
1 version - Latest release: over 1 year ago - 19 downloads total
Top 6.6% on hub.docker.com
evolbioinfo/haploconduct v0.2.1
1 version - Latest release: over 2 years ago - 18 downloads total
Top 3.3% on hub.docker.com
evolbioinfo/minionqc v1.4.1
Quality control for MinION sequencing data
1 version - Latest release: almost 5 years ago - 156 downloads total
Top 2.2% on hub.docker.com
evolbioinfo/samtools v1.16.1
Tools (written in C using htslib) for manipulating next-generation sequencing data
8 versions - Latest release: over 1 year ago - 7.06 thousand downloads total
Top 2.1% on hub.docker.com
evolbioinfo/goalign v0.3.6
Goalign is a set of command line tools to manipulate multiple alignments
32 versions - Latest release: over 1 year ago - 1.69 thousand downloads total
Top 3.3% on hub.docker.com
evolbioinfo/hmmer v3.3
HMMER: biosequence analysis using profile hidden Markov models
1 version - Latest release: about 4 years ago - 154 downloads total
Top 6.0% on hub.docker.com
evolbioinfo/rappas v1.21
1 version - Latest release: about 3 years ago - 21 downloads total
Top 5.5% on hub.docker.com
evolbioinfo/guppy v3.1.5
Oxford Nanopore Technologies Guppy basecaller Software
1 version - Latest release: almost 5 years ago - 31 downloads total
Top 3.4% on hub.docker.com
evolbioinfo/trimal v1.4.1
tool for the automated removal of spurious sequences or poorly aligned regions
1 version - Latest release: about 5 years ago - 149 downloads total
Top 5.3% on hub.docker.com
evolbioinfo/ptp v4bb2daf
PTP model for species delimitation (https://species.h-its.org/ptp/)
1 version - Latest release: over 5 years ago - 30 downloads total
Top 4.8% on hub.docker.com
evolbioinfo/jq v1.6
lightweight and flexible command-line JSON processor
1 version - Latest release: about 3 years ago - 44 downloads total
Top 4.3% on hub.docker.com
evolbioinfo/pcoc v898c138
PCOC is a convergent substitution detection tool
1 version - Latest release: about 6 years ago - 57 downloads total
Top 8.1% on hub.docker.com
evolbioinfo/rna-seqc v1.1.9
2 versions - Latest release: over 1 year ago - 13 downloads total
Top 4.6% on hub.docker.com
evolbioinfo/khmer v2.1.1
The khmer software for advanced biological sequencing data analysis
2 versions - Latest release: about 6 years ago - 46 downloads total
Top 6.0% on hub.docker.com
evolbioinfo/papara v2.5
1 version - Latest release: about 3 years ago - 21 downloads total
evolbioinfo/gofasta v1.2.1
3 versions - Latest release: 9 months ago - 20 downloads total
Top 5.1% on hub.docker.com
evolbioinfo/predicthaplo v1.0
This software aims at reconstructing haplotypes from next-generation sequencing data.
1 version - Latest release: about 6 years ago - 35 downloads total
Top 4.5% on hub.docker.com
evolbioinfo/jphmm_tools v0.1.4
4 versions - Latest release: about 3 years ago - 63 downloads total
Top 3.5% on hub.docker.com
evolbioinfo/ubuntu v20.04
Ubuntu is a Debian-based Linux operating system based on free software.
2 versions - Latest release: about 3 years ago - 133 downloads total
Top 5.5% on hub.docker.com
evolbioinfo/tcoffee Version_11.00.18778a8
A collection of tools for Computing, Evaluating and Manipulating Multiple Alignments
1 version - Latest release: over 5 years ago - 28 downloads total
Top 1.3% on hub.docker.com
evolbioinfo/gotree v0.4.4
Set of command line tools to manipulate phylogenetic trees
21 versions - Latest release: over 1 year ago - 1 dependent repositories - 1.7 thousand downloads total
Top 3.2% on hub.docker.com
evolbioinfo/kraken v2.1.3
Taxonomic classification system using exact k-mer matches
2 versions - Latest release: 11 months ago - 258 downloads total
Top 6.3% on hub.docker.com
evolbioinfo/haplogrep v2.4.0
tool for mtDNA haplogroup classification
1 version - Latest release: over 2 years ago - 19 downloads total
Top 4.7% on hub.docker.com
evolbioinfo/vamb v3.0.2
https://github.com/RasmussenLab/vamb
2 versions - Latest release: about 3 years ago - 47 downloads total
evolbioinfo/snag v0.2
1 version - Latest release: 7 months ago - 5 downloads total
Top 6.4% on hub.docker.com
evolbioinfo/canu v2.0
A single molecule sequence assembler for genomes large and small
1 version - Latest release: almost 4 years ago - 18 downloads total
Top 2.3% on hub.docker.com
evolbioinfo/r-base v4.0.2
R is a system for statistical computation and graphics.
2 versions - Latest release: over 3 years ago - 1 dependent repositories - 149 downloads total
Top 3.4% on hub.docker.com
evolbioinfo/trimgalore v0.6.7
https://github.com/FelixKrueger/TrimGalore/
2 versions - Latest release: over 1 year ago - 227 downloads total
Top 8.1% on hub.docker.com
evolbioinfo/codepi 773545822
1 version - Latest release: over 2 years ago - 12 downloads total
Top 2.6% on hub.docker.com
evolbioinfo/subread v2.0.3
2 versions - Latest release: over 1 year ago - 437 downloads total
evolbioinfo/reseq 053b8d1
1 version - Latest release: 9 months ago - 7 downloads total
Top 4.0% on hub.docker.com
evolbioinfo/bowtie2 v2.5.1
A fast and sensitive gapped read aligner
4 versions - Latest release: 10 months ago - 78 downloads total
Top 5.1% on hub.docker.com
evolbioinfo/velvet v1.2.10
Short read de novo assembler using de Bruijn graphs http://www.ebi.ac.uk/~zerbino/velvet/
1 version - Latest release: over 5 years ago - 34 downloads total
Top 3.0% on hub.docker.com
evolbioinfo/noisy v1.5.12
Noisy - identify homo-plastic characters in multiple sequence alignments
1 version - Latest release: about 6 years ago - 238 downloads total
Top 2.2% on hub.docker.com
evolbioinfo/sratoolkit v3.0.1
https://www.ncbi.nlm.nih.gov/sra/docs/toolkitsoft/
3 versions - Latest release: over 1 year ago - 1.18 thousand downloads total
Top 3.4% on hub.docker.com
evolbioinfo/covid-align latest
COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM
1 version - Latest release: almost 4 years ago - 146 downloads total
Top 5.9% on hub.docker.com
evolbioinfo/seqtk v1.3
1 version - Latest release: almost 4 years ago - 22 downloads total
Top 2.9% on hub.docker.com
evolbioinfo/bmge v1.12
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
1 version - Latest release: about 6 years ago - 270 downloads total
Top 2.9% on hub.docker.com
evolbioinfo/raxml v8.2.11
https://github.com/stamatak/standard-RAxML
7 versions - Latest release: over 6 years ago - 297 downloads total
Top 2.8% on hub.docker.com
evolbioinfo/ngphylogeny-galaxy v0.1.0
This repository contains tools and workflows used in NGPhylogeny.fr via galaxy.
2 versions - Latest release: about 6 years ago - 341 downloads total
Top 6.1% on hub.docker.com
evolbioinfo/r-gisaid v4.1.2
1 version - Latest release: over 2 years ago - 20 downloads total
Top 5.7% on hub.docker.com
evolbioinfo/bayestraits v4.0.0
2 versions - Latest release: over 1 year ago - 56 downloads total
Top 2.4% on hub.docker.com
evolbioinfo/fasttree v2.1.11
FastTree infers approx-max-likelihood phylogenetic trees from alignments of nt or aa sequences
5 versions - Latest release: almost 4 years ago - 716 downloads total