Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
hub.docker.com namespaces: evolbioinfo
Top 8.1% on hub.docker.com
evolbioinfo/codepi 773545822
1 version - Latest release: over 2 years ago - 12 downloads total
Top 2.6% on hub.docker.com
evolbioinfo/subread v2.0.3
2 versions - Latest release: over 1 year ago - 437 downloads total
Top 4.0% on hub.docker.com
4 versions - Latest release: 11 months ago - 78 downloads total
evolbioinfo/bowtie2 v2.5.1
A fast and sensitive gapped read aligner4 versions - Latest release: 11 months ago - 78 downloads total
Top 5.1% on hub.docker.com
1 version - Latest release: over 5 years ago - 34 downloads total
evolbioinfo/velvet v1.2.10
Short read de novo assembler using de Bruijn graphs http://www.ebi.ac.uk/~zerbino/velvet/1 version - Latest release: over 5 years ago - 34 downloads total
Top 2.2% on hub.docker.com
3 versions - Latest release: over 1 year ago - 1.18 thousand downloads total
evolbioinfo/sratoolkit v3.0.1
https://www.ncbi.nlm.nih.gov/sra/docs/toolkitsoft/3 versions - Latest release: over 1 year ago - 1.18 thousand downloads total
Top 3.4% on hub.docker.com
1 version - Latest release: almost 4 years ago - 146 downloads total
evolbioinfo/covid-align latest
COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM1 version - Latest release: almost 4 years ago - 146 downloads total
Top 5.9% on hub.docker.com
evolbioinfo/seqtk v1.3
1 version - Latest release: almost 4 years ago - 22 downloads total
Top 2.9% on hub.docker.com
1 version - Latest release: about 6 years ago - 270 downloads total
evolbioinfo/bmge v1.12
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis1 version - Latest release: about 6 years ago - 270 downloads total
Top 2.9% on hub.docker.com
7 versions - Latest release: over 6 years ago - 297 downloads total
evolbioinfo/raxml v8.2.11
https://github.com/stamatak/standard-RAxML7 versions - Latest release: over 6 years ago - 297 downloads total
Top 5.7% on hub.docker.com
evolbioinfo/bayestraits v4.0.0
2 versions - Latest release: almost 2 years ago - 56 downloads total
Top 2.4% on hub.docker.com
5 versions - Latest release: almost 4 years ago - 716 downloads total
evolbioinfo/fasttree v2.1.11
FastTree infers approx-max-likelihood phylogenetic trees from alignments of nt or aa sequences5 versions - Latest release: almost 4 years ago - 716 downloads total
Top 5.2% on hub.docker.com
8 versions - Latest release: almost 2 years ago - 42 downloads total
evolbioinfo/bdei v0.1.17
Birth-Death Infectious-Exposed Model parameter estimator8 versions - Latest release: almost 2 years ago - 42 downloads total
Top 6.6% on hub.docker.com
evolbioinfo/strainline 8af032906e
1 version - Latest release: over 2 years ago - 20 downloads total
Top 2.5% on hub.docker.com
18 versions - Latest release: 9 months ago - 679 downloads total
evolbioinfo/iqtree v2.2.5
A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood.18 versions - Latest release: 9 months ago - 679 downloads total
Top 7.3% on hub.docker.com
evolbioinfo/deseq v1.39.0
1 version - Latest release: over 3 years ago - 14 downloads total
Top 2.4% on hub.docker.com
evolbioinfo/star v2.7.11a
5 versions - Latest release: 5 months ago - 682 downloads total
Top 5.6% on hub.docker.com
evolbioinfo/emboss v6.6.0
1 version - Latest release: almost 2 years ago - 64 downloads total
Top 7.3% on hub.docker.com
1 version - Latest release: about 3 years ago - 14 downloads total
evolbioinfo/civet v2.1.2
https://github.com/artic-network/civet/1 version - Latest release: about 3 years ago - 14 downloads total
Top 4.5% on hub.docker.com
2 versions - Latest release: over 5 years ago - 52 downloads total
evolbioinfo/fastcodeml v1.1.0
FastCodeML is a software to infer positive selection along positions of a protein coding gene2 versions - Latest release: over 5 years ago - 52 downloads total
Top 3.9% on hub.docker.com
3 versions - Latest release: 6 months ago - 88 downloads total
evolbioinfo/tqdist v1.0.2
a triplet and quartet distance library3 versions - Latest release: 6 months ago - 88 downloads total
Top 6.6% on hub.docker.com
1 version - Latest release: over 1 year ago - 19 downloads total
evolbioinfo/schmutzi v1.5.6
schmutzi: Bayesian maximum a posteriori contamination estimate for ancient samples1 version - Latest release: over 1 year ago - 19 downloads total
Top 2.7% on hub.docker.com
3 versions - Latest release: about 3 years ago - 533 downloads total
evolbioinfo/fastqc v0.11.9
A quality control tool for high throughput sequence data.3 versions - Latest release: about 3 years ago - 533 downloads total
Top 3.2% on hub.docker.com
2 versions - Latest release: about 3 years ago - 237 downloads total
evolbioinfo/ivar v1.3.1
https://github.com/andersen-lab/ivar2 versions - Latest release: about 3 years ago - 237 downloads total
Top 4.3% on hub.docker.com
evolbioinfo/treedater 89a0df0_bash
2 versions - Latest release: about 5 years ago - 57 downloads total
Top 4.7% on hub.docker.com
1 version - Latest release: about 6 years ago - 42 downloads total
evolbioinfo/vivan v0.43
ViVan - Viral Variance Analysis http://vivan.tau.ac.il/index.php1 version - Latest release: about 6 years ago - 42 downloads total
Top 4.2% on hub.docker.com
evolbioinfo/mapdamage v2.2.1
1 version - Latest release: over 3 years ago - 71 downloads total
Top 2.5% on hub.docker.com
7 versions - Latest release: 10 months ago - 564 downloads total
evolbioinfo/mafft v7.520
Multiple alignment program for amino acid or nucleotide sequences7 versions - Latest release: 10 months ago - 564 downloads total
Top 4.3% on hub.docker.com
7 versions - Latest release: over 1 year ago - 75 downloads total
evolbioinfo/phylodeep v0.3.1
Parameter estimation and model selection from phylogenetic trees, based on deep learning.7 versions - Latest release: over 1 year ago - 75 downloads total
Top 4.2% on hub.docker.com
4 versions - Latest release: over 1 year ago - 65 downloads total
evolbioinfo/spades v3.15.4
SPAdes is an assembly toolkit containing various assembly pipelines4 versions - Latest release: over 1 year ago - 65 downloads total
Top 5.3% on hub.docker.com
1 version - Latest release: over 3 years ago - 34 downloads total
evolbioinfo/damageprofiler v1.1
https://github.com/Integrative-Transcriptomics/DamageProfiler1 version - Latest release: over 3 years ago - 34 downloads total
Top 4.8% on hub.docker.com
evolbioinfo/snakemake v5.6.0
1 version - Latest release: over 4 years ago - 40 downloads totalevolbioinfo/cd-hit v4.8.1
1 version - Latest release: almost 2 years ago - 9 downloads total
Top 3.1% on hub.docker.com
evolbioinfo/deseq2 v1.28.1
1 version - Latest release: over 3 years ago - 208 downloads totalevolbioinfo/artic-ncov e814ed4_1.3.0dev
1 version - Latest release: over 1 year ago - 10 downloads total
Top 3.8% on hub.docker.com
3 versions - Latest release: over 1 year ago - 101 downloads total
evolbioinfo/bedtools v2.30.0
A powerful toolset for genome arithmetic.3 versions - Latest release: over 1 year ago - 101 downloads total
Top 3.2% on hub.docker.com
6 versions - Latest release: over 2 years ago - 171 downloads total
evolbioinfo/treetime v0.8.5
Maximum likelihood dating and ancestral inference for phylogenetic trees6 versions - Latest release: over 2 years ago - 171 downloads total
Top 5.1% on hub.docker.com
1 version - Latest release: over 5 years ago - 34 downloads total
evolbioinfo/paml v4.8a
PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using ML1 version - Latest release: over 5 years ago - 34 downloads total
Top 2.8% on hub.docker.com
14 versions - Latest release: about 1 year ago - 325 downloads total
evolbioinfo/lsd2 v2.4.1
LSD2: LEAST-SQUARES METHODS TO ESTIMATE RATES AND DATES FROM PHYLOGENIES14 versions - Latest release: about 1 year ago - 325 downloads total