Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
hub.docker.com namespaces: nfcore
Top 1.5% on hub.docker.com
2 versions - Latest release: over 5 years ago - 1.16 thousand downloads total - 14 stars on GitHub
nfcore/exoseq dev
A docker container for the ExoSeq pipeline2 versions - Latest release: over 5 years ago - 1.16 thousand downloads total - 14 stars on GitHub
Top 1.2% on hub.docker.com
nfcore/mag 1.2.0
7 versions - Latest release: over 3 years ago - 38.5 thousand downloads total
Top 1.1% on hub.docker.com
3 versions - Latest release: about 3 years ago - 5.58 thousand downloads total - 17 stars on GitHub
nfcore/clipseq 1.0.0
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and mul...3 versions - Latest release: about 3 years ago - 5.58 thousand downloads total - 17 stars on GitHub
Top 7.3% on hub.docker.com
nfcore/proteinfold_alphafold2_msa 1.1.0
3 versions - Latest release: about 1 year ago - 127 downloads total
Top 1.2% on hub.docker.com
5 versions - Latest release: over 4 years ago - 2.6 thousand downloads total - 35 stars on GitHub
nfcore/bcellmagic 1.2.0
A preliminary container for the bcellmagic pipeline5 versions - Latest release: over 4 years ago - 2.6 thousand downloads total - 35 stars on GitHub
Top 0.3% on hub.docker.com
29 versions - Latest release: almost 3 years ago - 131 dependent repositories - 95.3 thousand downloads total
nfcore/base 2.0.1
A base Docker image for nf-core.29 versions - Latest release: almost 3 years ago - 131 dependent repositories - 95.3 thousand downloads total
Top 2.8% on hub.docker.com
2 versions - Latest release: over 1 year ago - 671 downloads total
nfcore/universc 1.2.4
Mirror of container for UniverSC: a flexible cross-platform SC data processing pipeline2 versions - Latest release: over 1 year ago - 671 downloads total
Top 2.8% on hub.docker.com
2 versions - Latest release: almost 5 years ago - 791 downloads total
nfcore/bactmap dev
A Docker container for the bactmap pipeline.2 versions - Latest release: almost 5 years ago - 791 downloads total
Top 1.8% on hub.docker.com
29 versions - Latest release: 9 days ago - 7.13 thousand downloads total
nfcore/tools 2.14.1
Python package with helper tools for the nf-core community. https://nf-co.re/tools29 versions - Latest release: 9 days ago - 7.13 thousand downloads total
Top 2.4% on hub.docker.com
nfcore/cellrangermkfastq 7.1.0
3 versions - Latest release: about 1 year ago - 1.35 thousand downloads total
Top 1.3% on hub.docker.com
3 versions - Latest release: about 4 years ago - 32.2 thousand downloads total - 4 stars on GitHub
nfcore/slamseq 1.0.0
A docker image for nf-core/slamseq3 versions - Latest release: about 4 years ago - 32.2 thousand downloads total - 4 stars on GitHub
Top 0.8% on hub.docker.com
2 versions - Latest release: about 3 years ago - 21.8 thousand downloads total - 18 stars on GitHub
nfcore/kmermaid dev
A Docker container for the nf-core/kmermaid pipelin2 versions - Latest release: about 3 years ago - 21.8 thousand downloads total - 18 stars on GitHub
nfcore/clinvap
A Docker Image repository for the nf-core/clinvap pipeline.Latest release: 9 days ago - 0 downloads total
Top 1.5% on hub.docker.com
2 versions - Latest release: over 5 years ago - 1.16 thousand downloads total - 28 stars on GitHub
nfcore/lncpipe dev
A Docker image for nf-core/lncpipe2 versions - Latest release: over 5 years ago - 1.16 thousand downloads total - 28 stars on GitHub
Top 2.2% on hub.docker.com
2 versions - Latest release: about 3 years ago - 1.73 thousand downloads total - 15 stars on GitHub
nfcore/smartseq2 dev
A docker container for the nf-core/smartseq2 pipeline.2 versions - Latest release: about 3 years ago - 1.73 thousand downloads total - 15 stars on GitHub
Top 2.3% on hub.docker.com
nfcore/bcl2fastq latest
2 versions - Latest release: about 1 year ago - 1.92 thousand downloads total
Top 1.6% on hub.docker.com
2 versions - Latest release: over 4 years ago - 950 downloads total - 6 stars on GitHub
nfcore/denovohybrid dev
A Docker Image for the nf-core/denovohybrid pipeline2 versions - Latest release: over 4 years ago - 950 downloads total - 6 stars on GitHub
Top 2.3% on hub.docker.com
3 versions - Latest release: about 4 years ago - 1.36 thousand downloads total
nfcore/nascent dev
Nascent Transcription Processing Pipeline3 versions - Latest release: about 4 years ago - 1.36 thousand downloads total
Top 2.2% on hub.docker.com
nfcore/airrflowreport dev
1 version - Latest release: about 1 year ago - 995 downloads total
Top 1.7% on hub.docker.com
10 versions - Latest release: over 3 years ago - 5.7 thousand downloads total
nfcore/hlatyping 1.2.0
A Docker container for the nf-core/hlatyping pipeline.10 versions - Latest release: over 3 years ago - 5.7 thousand downloads total
Top 1.7% on hub.docker.com
1 version - Latest release: almost 2 years ago - 576 downloads total - 83 stars on GitHub
nfcore/test-datasets rnafusion
This contains docker images for nf-core/test-datasets1 version - Latest release: almost 2 years ago - 576 downloads total - 83 stars on GitHub
Top 1.4% on hub.docker.com
28 versions - Latest release: over 1 year ago - 29.4 thousand downloads total
nfcore/vep 108.2.GRCh38
VEP images for nf-core pipelines28 versions - Latest release: over 1 year ago - 29.4 thousand downloads total
Top 1.1% on hub.docker.com
3 versions - Latest release: over 3 years ago - 5.44 thousand downloads total - 32 stars on GitHub
nfcore/proteomicslfq 1.0.0
A Docker Container for label free quantification for proteomics data.3 versions - Latest release: over 3 years ago - 5.44 thousand downloads total - 32 stars on GitHub
Top 5.2% on hub.docker.com
nfcore/proteinfold_alphafold2_standard 1.1.0
3 versions - Latest release: about 1 year ago - 822 downloads total
Top 1.4% on hub.docker.com
8 versions - Latest release: almost 3 years ago - 15.3 thousand downloads total
nfcore/hic 1.3.0
A docker container for the nf-core/hic pipeline.8 versions - Latest release: almost 3 years ago - 15.3 thousand downloads total
Top 1.6% on hub.docker.com
4 versions - Latest release: about 3 years ago - 7.71 thousand downloads total - 113 stars on GitHub
nfcore/scrnaseq 1.1.0
A Docker Container for the nf-core/scrnaseq pipeline.4 versions - Latest release: about 3 years ago - 7.71 thousand downloads total - 113 stars on GitHub
Top 2.3% on hub.docker.com
4 versions - Latest release: about 1 year ago - 7.35 thousand downloads total
nfcore/sentieon latest
Docker containers to run licensed Sentieon software: www.sentieon.com4 versions - Latest release: about 1 year ago - 7.35 thousand downloads total
Top 1.6% on hub.docker.com
2 versions - Latest release: over 5 years ago - 965 downloads total - 4 stars on GitHub
nfcore/ddamsproteomics dev
A Docker image for the nf-core/ddamsproteomics pipeline.2 versions - Latest release: over 5 years ago - 965 downloads total - 4 stars on GitHub
Top 1.5% on hub.docker.com
3 versions - Latest release: almost 2 years ago - 1.17 thousand downloads total - 10 stars on GitHub
nfcore/mnaseseq 1.0.0
A Docker container for the nf-core/mnaseseq pipeline.3 versions - Latest release: almost 2 years ago - 1.17 thousand downloads total - 10 stars on GitHub
Top 2.0% on hub.docker.com
3 versions - Latest release: about 3 years ago - 2.92 thousand downloads total
nfcore/pgdb 1.0.0
ProteomeGenomics Database Creation - Nextflow Pipeline3 versions - Latest release: about 3 years ago - 2.92 thousand downloads total
Top 0.5% on hub.docker.com
9 versions - Latest release: over 4 years ago - 660 thousand downloads total - 751 stars on GitHub
nfcore/rnaseq 1.4.2
Docker Image for nf-core/rnaseq project.9 versions - Latest release: over 4 years ago - 660 thousand downloads total - 751 stars on GitHub
Top 1.1% on hub.docker.com
16 versions - Latest release: over 3 years ago - 5.95 thousand downloads total - 29 stars on GitHub
nfcore/mhcquant 1.6.0
A Docker image for nf-core/mhcquant16 versions - Latest release: over 3 years ago - 5.95 thousand downloads total - 29 stars on GitHub
Top 1.9% on hub.docker.com
4 versions - Latest release: over 1 year ago - 8.39 thousand downloads total
nfcore/bclconvert 4.0.3
illumina bcl-convert. This is not an official image supported by illumina.4 versions - Latest release: over 1 year ago - 8.39 thousand downloads total
Top 3.0% on hub.docker.com
nfcore/cutandrun dev
1 version - Latest release: almost 3 years ago - 457 downloads total
Top 3.3% on hub.docker.com
nfcore/spaceranger 2.1.0
3 versions - Latest release: 11 months ago - 1.96 thousand downloads total
Top 0.5% on hub.docker.com
10 versions - Latest release: almost 2 years ago - 1.06 million downloads total - 294 stars on GitHub
nfcore/sarek 2.7.2
A Docker container for the nf-core/sarek pipeline10 versions - Latest release: almost 2 years ago - 1.06 million downloads total - 294 stars on GitHub
Top 1.1% on hub.docker.com
7 versions - Latest release: about 2 years ago - 54.6 thousand downloads total
nfcore/atacseq 1.2.2
A Docker container for the nf-core/atacseq pipeline.7 versions - Latest release: about 2 years ago - 54.6 thousand downloads total
Top 1.4% on hub.docker.com
nfcore/cellranger 7.1.0
4 versions - Latest release: about 1 year ago - 20.8 thousand downloads total
Top 1.1% on hub.docker.com
7 versions - Latest release: about 3 years ago - 50.3 thousand downloads total
nfcore/chipseq 1.2.2
A docker image for nf-core/chipseq7 versions - Latest release: about 3 years ago - 50.3 thousand downloads total
Top 1.3% on hub.docker.com
39 versions - Latest release: almost 4 years ago - 24.4 thousand downloads total
nfcore/rnafusion 1.2.0
A Docker image for the nf-core/rnafusion pipeline.39 versions - Latest release: almost 4 years ago - 24.4 thousand downloads total
Top 9.3% on hub.docker.com
nfcore/proteinfold_alphafold2_split 1.1.0
3 versions - Latest release: about 1 year ago - 109 downloads total
Top 1.6% on hub.docker.com
2 versions - Latest release: over 4 years ago - 9.52 thousand downloads total
nfcore/supernova 2.1.1
Docker container for 10X Supernova assembler used by the nf-core/neutronstar pipeline2 versions - Latest release: over 4 years ago - 9.52 thousand downloads total
Top 1.4% on hub.docker.com
5 versions - Latest release: over 1 year ago - 1.89 thousand downloads total - 8 stars on GitHub
nfcore/coproid 1.1.1
A Docker image for the nf-core/coproid pipeline.5 versions - Latest release: over 1 year ago - 1.89 thousand downloads total - 8 stars on GitHub
Top 1.1% on hub.docker.com
9 versions - Latest release: about 3 years ago - 6.26 thousand downloads total - 12 stars on GitHub
nfcore/diaproteomics 1.2.4
A Docker container for nf-core/diaproteomics9 versions - Latest release: about 3 years ago - 6.26 thousand downloads total - 12 stars on GitHub
Top 1.5% on hub.docker.com
8 versions - Latest release: over 3 years ago - 10.4 thousand downloads total
nfcore/ampliseq 1.2.0
A Docker image for nf-core/ampliseq.8 versions - Latest release: over 3 years ago - 10.4 thousand downloads total
Top 0.3% on hub.docker.com
30 versions - Latest release: 3 months ago - 1 dependent repositories - 41.7 thousand downloads total - 122 stars on GitHub
nfcore/eager 2.5.1
A Docker image for the nf-core/eager pipeline.30 versions - Latest release: 3 months ago - 1 dependent repositories - 41.7 thousand downloads total - 122 stars on GitHub
Top 0.8% on hub.docker.com
4 versions - Latest release: almost 3 years ago - 41.7 thousand downloads total - 64 stars on GitHub
nfcore/smrnaseq 1.1.0
A Docker container for the nf-core/smrnaseq pipeline.4 versions - Latest release: almost 3 years ago - 41.7 thousand downloads total - 64 stars on GitHub
Top 1.4% on hub.docker.com
3 versions - Latest release: over 4 years ago - 1.31 thousand downloads total - 4 stars on GitHub
nfcore/neutronstar 1.0.0
A Docker Container for nf-core/neutronstar3 versions - Latest release: over 4 years ago - 1.31 thousand downloads total - 4 stars on GitHub
Top 1.2% on hub.docker.com
5 versions - Latest release: over 3 years ago - 3.39 thousand downloads total - 50 stars on GitHub
nfcore/bacass 1.1.1
A Docker container for the nf-core/bacass pipeline.5 versions - Latest release: over 3 years ago - 3.39 thousand downloads total - 50 stars on GitHub
Top 2.3% on hub.docker.com
1 version - Latest release: over 1 year ago - 1.2 thousand downloads total
nfcore/circrna dev
Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.1 version - Latest release: over 1 year ago - 1.2 thousand downloads total
nfcore/scflow
Complete analysis workflow for single-cell/nuclei RNA-sequencing data.Latest release: about 2 months ago - 0 downloads total
nfcore/crisprvar
A Docker container for the nf-core/crisprvar pipelineLatest release: about 2 months ago - 0 downloads total - 5 stars on GitHub
Top 1.7% on hub.docker.com
2 versions - Latest release: over 5 years ago - 566 downloads total - 14 stars on GitHub
nfcore/vipr latest
A docker container for VIPR2 versions - Latest release: over 5 years ago - 566 downloads total - 14 stars on GitHub
Top 1.6% on hub.docker.com
nfcore/gitpod 2.11.1
10 versions - Latest release: 5 months ago - 14.6 thousand downloads total
Top 1.6% on hub.docker.com
13 versions - Latest release: over 1 year ago - 14.1 thousand downloads total
nfcore/snpeff 5.1.R64-1-1
snpEff images for nf-core pipelines13 versions - Latest release: over 1 year ago - 14.1 thousand downloads total
Top 0.4% on hub.docker.com
10 versions - Latest release: about 3 years ago - 1 dependent repositories - 92.9 thousand downloads total
nfcore/methylseq 1.6.1
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.10 versions - Latest release: about 3 years ago - 1 dependent repositories - 92.9 thousand downloads total
nfcore/cellranger_clean 3.0.2.9002
Mirror of universc Single cell tooling - cellranger_clean1 version - Latest release: over 1 year ago - 6 downloads total
Top 5.1% on hub.docker.com
nfcore/proteinfold_colabfold 1.1.0
3 versions - Latest release: about 1 year ago - 3.99 thousand downloads total
Top 1.2% on hub.docker.com
4 versions - Latest release: over 3 years ago - 3.92 thousand downloads total - 27 stars on GitHub
nfcore/epitopeprediction 1.1.0
A docker image for nf-core/epitopeprediction4 versions - Latest release: over 3 years ago - 3.92 thousand downloads total - 27 stars on GitHub
Top 3.4% on hub.docker.com
1 version - Latest release: over 4 years ago - 410 downloads total
nfcore/guideseq dev
A Docker container for the nf-core/guideseq pipeline.1 version - Latest release: over 4 years ago - 410 downloads total
Top 1.2% on hub.docker.com
3 versions - Latest release: over 5 years ago - 3.75 thousand downloads total - 40 stars on GitHub
nfcore/deepvariant dev
A Docker image for the nf-core/deepvariant pipeline.3 versions - Latest release: over 5 years ago - 3.75 thousand downloads total - 40 stars on GitHub
Top 1.5% on hub.docker.com
4 versions - Latest release: over 3 years ago - 9.68 thousand downloads total
nfcore/nanoseq dev
Nanopore demultiplexing, QC and alignment pipeline4 versions - Latest release: over 3 years ago - 9.68 thousand downloads total