Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

npmjs.org "biology" keyword

node-red-contrib-biotools-sequence 0.0.5
bioinformatics package for node-red (sequence management)
5 versions - Latest release: about 2 years ago - 1 dependent package - 7 downloads last month - 1 stars on GitHub - 1 maintainer
bioseq-ts 0.1.0
Biological Sequence in Javascript, written in Typescript.
19 versions - Latest release: over 4 years ago - 2 dependent packages - 5 dependent repositories - 471 downloads last month - 0 stars on GitLab.com - 1 maintainer
Top 6.4% on npmjs.org
bionode 4.0.1
A Node.js JavaScript library for client and server side bioinformatics
27 versions - Latest release: about 7 years ago - 2 dependent packages - 2 dependent repositories - 93 downloads last month - 308 stars on GitHub - 1 maintainer
bionode-go 1.0.1
Bionode module for Gene Ontology
2 versions - Latest release: about 9 years ago - 1 dependent package - 1 dependent repositories - 9 downloads last month - 7 stars on GitHub - 1 maintainer
homology 0.6.0
Genome homology API client
7 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 20 downloads last month - 2 stars on GitHub - 1 maintainer
Top 7.4% on npmjs.org
fasta-parser 0.1.0
Buffer Stream parser from FASTA to JSON
3 versions - Latest release: almost 10 years ago - 3 dependent packages - 15 dependent repositories - 52 downloads last month - 6 stars on GitHub - 3 maintainers
bionode-sra 2.0.0
A Node.js wrapper for SRA Toolkit.
13 versions - Latest release: over 5 years ago - 3 dependent packages - 3 dependent repositories - 40 downloads last month - 6 stars on GitHub - 3 maintainers
microplate 2.7.1
A module for parsing, reading & writing microtiter plate layouts in XSLX format.
18 versions - Latest release: over 8 years ago - 2 dependent packages - 1 dependent repositories - 18 downloads last month - 2 stars on GitHub - 1 maintainer
Top 5.1% on npmjs.org
bionode-ncbi 2.0.1
Node.js module for working with the NCBI API (aka e-utils) using Streams.
49 versions - Latest release: about 7 years ago - 5 dependent packages - 10 dependent repositories - 27 downloads last month - 65 stars on GitHub - 3 maintainers
bionode-bwa 2.0.0
A Node.js wrapper for the Burrow-Wheeler Aligner (BWA).
11 versions - Latest release: about 9 years ago - 3 dependent packages - 3 dependent repositories - 49 downloads last month - 7 stars on GitHub - 3 maintainers
libsbmljs_stable 5.18.0-beta1
A WebAssembly/JavaScript SBML library
4 versions - Latest release: about 5 years ago - 2 dependent packages - 2 dependent repositories - 11 downloads last month - 5 stars on GitHub - 1 maintainer
xeno-canto 0.0.4
Node.js API for xeno-canto database webservices
5 versions - Latest release: over 6 years ago - 3 dependent repositories - 31 downloads last month - 8 stars on GitHub - 1 maintainer
d3-electrophoresis 1.0.3
D3.js plugin to simulate electrophoresis by cutting text.
3 versions - Latest release: about 7 years ago - 1 dependent package - 1 dependent repositories - 4 downloads last month - 28 stars on GitHub - 1 maintainer
bionode-template 0.0.5
Template module to use as base for quickly creating bionode modules.
4 versions - Latest release: over 9 years ago - 1 dependent package - 1 dependent repositories - 5 downloads last month - 8 stars on GitHub - 3 maintainers
@abolis/plate-maker 1.2.0
Open source Front-End tool to simulate and visualize a microplate
7 versions - Latest release: about 3 years ago - 3 dependent packages - 12 downloads last month - 4 stars on GitHub - 2 maintainers
sgd_visualization_beta 2.0.1-beta-sw.31
[![Build Status](https://travis-ci.org/yeastgenome/sgd_visualization.svg)](https://travis-ci.org/...
93 versions - Latest release: almost 4 years ago - 18 downloads last month - 3 stars on GitHub - 1 maintainer
node-red-contrib-biotools 0.0.43
bioinformatics package for node-red (input / output)
36 versions - Latest release: about 2 years ago - 1 dependent package - 79 downloads last month - 1 stars on GitHub - 1 maintainer
taxaprisma 0.0.12
colors, silhouette images and fonts for taxonomic groups
12 versions - Latest release: almost 3 years ago - 1 dependent package - 3 dependent repositories - 23 downloads last month - 3 stars on GitHub - 2 maintainers
microflex 1.0.0
MicroFlex - The World's First Microplate Library
13 versions - Latest release: about 7 years ago - 2 dependent packages - 1 dependent repositories - 77 downloads last month - 0 stars on GitHub - 1 maintainer
23andme 1.1.0
JavaScript wrapper for the 23andMe API.
4 versions - Latest release: about 8 years ago - 4 dependent packages - 1 dependent repositories - 28 downloads last month - 3 stars on GitHub - 1 maintainer
@larsgw/gpml-rhea 0.1.0
Annotate GPML pathways with Rhea identifiers
1 version - Latest release: over 3 years ago - 1 dependent package - 6 downloads last month - 0 stars on GitHub - 1 maintainer
phred 1.0.1
convert phred quality scores to and from other numerical representations
2 versions - Latest release: over 9 years ago - 2 dependent packages - 2 dependent repositories - 18 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.3% on npmjs.org
bionode-sam 1.0.1
Node.js wrapper for samtools.
6 versions - Latest release: over 9 years ago - 3 dependent packages - 3 dependent repositories - 25 downloads last month - 5 stars on GitHub - 3 maintainers
sbml_websim 1.0.0
A web-based SBML simulator.
1 version - Latest release: about 5 years ago - 1 dependent repositories - 7 downloads last month - 0 stars on GitHub - 1 maintainer
parse-nomen 2.1.3
TypeScript/JavaScript function for parsing biological names.
11 versions - Latest release: about 1 year ago - 2 dependent packages - 1 dependent repositories - 60 downloads last month - 1 stars on GitHub - 1 maintainer
Top 9.5% on npmjs.org
escher-vis 1.6.1
Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biolog...
19 versions - Latest release: over 6 years ago - 1 dependent package - 1 dependent repositories - 250 downloads last month - 207 stars on GitHub - 1 maintainer
sequence-alignment 0.0.8
Sequence Alignment Algorithms implemented in Javascript, with a command line application
7 versions - Latest release: over 3 years ago - 23 downloads last month - 3 stars on GitHub - 1 maintainer
kegg-db 0.0.7
JavaScript wrapper to the KEGG Database API
7 versions - Latest release: over 6 years ago - 1 dependent package - 1 dependent repositories - 7 downloads last month - 1 stars on GitHub - 1 maintainer
Top 5.5% on npmjs.org
clustergrammer2 0.18.0
A Custom Jupyter Widget Library
67 versions - Latest release: almost 3 years ago - 3 dependent packages - 1 dependent repositories - 18 downloads last month - 113 stars on GitHub - 1 maintainer
evolvejs 0.0.0
A library for Evolutionary Computation algorithms
1 version - Latest release: about 9 years ago - 1 dependent package - 1 dependent repositories - 15 downloads last month - 1 maintainer
sgd_visualization3 2.0.8
[![Build Status](https://travis-ci.org/yeastgenome/sgd_visualization.svg)](https://travis-ci.org/...
9 versions - Latest release: about 4 years ago - 19 downloads last month - 3 stars on GitHub - 1 maintainer
gitax 0.0.6
from NCBI gi to taxonomy id
6 versions - Latest release: about 10 years ago - 2 dependent packages - 1 dependent repositories - 18 downloads last month - 2 stars on GitHub - 1 maintainer
proteins-schema 1.2.1
JSON Protein schema
6 versions - Latest release: about 9 years ago - 1 dependent package - 1 dependent repositories - 14 downloads last month - 0 stars on GitHub - 1 maintainer
cxmate 0.1.0
SDK for creating cxMate services
1 version - Latest release: almost 7 years ago - 1 dependent package - 1 dependent repositories - 6 downloads last month - 0 stars on GitHub - 1 maintainer
mplexviz-ngraph 1.1.4
A visualisation module for multilayer networks as modelled by mplexnet using ngraph.
10 versions - Latest release: over 5 years ago - 1 dependent package - 1 dependent repositories - 28 downloads last month - 3 stars on GitHub - 1 maintainer
mplexnet 0.2.7
A model for Multilayer/Complex Networks
5 versions - Latest release: over 8 years ago - 2 dependent packages - 1 dependent repositories - 12 downloads last month - 3 stars on GitHub - 1 maintainer
bionode-watermill 0.5.1
A (Not Yet Streaming) Workflow Engine
3 versions - Latest release: almost 7 years ago - 1 dependent package - 1 dependent repositories - 102 downloads last month - 37 stars on GitHub - 1 maintainer
Top 6.4% on npmjs.org
@dd-decaf/escher 1.6.38
Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Metabo...
60 versions - Latest release: almost 6 years ago - 2 dependent packages - 1 dependent repositories - 28 downloads last month - 204 stars on GitHub - 6 maintainers
sgd_visualization_new 2.0.1
[![Build Status](https://travis-ci.org/yeastgenome/sgd_visualization.svg)](https://travis-ci.org/...
2 versions - Latest release: almost 4 years ago - 6 downloads last month - 3 stars on GitHub - 1 maintainer
Top 5.1% on npmjs.org
ntseq 1.1.0
Nucleotide sequence manipulation and analysis library
18 versions - Latest release: over 7 years ago - 2 dependent packages - 4 dependent repositories - 382 downloads last month - 208 stars on GitHub - 1 maintainer
genotype 1.0.2
functions for manipulating genotypes and genotype likelihoods
3 versions - Latest release: over 9 years ago - 1 dependent package - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 1 maintainer
Top 3.8% on npmjs.org
escher 1.7.3
Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Metabo...
31 versions - Latest release: over 4 years ago - 3 dependent packages - 11 dependent repositories - 944 downloads last month - 204 stars on GitHub - 1 maintainer
libsbmljs_experimental 5.18.1-alpha1
A WebAssembly/JavaScript SBML library
5 versions - Latest release: almost 5 years ago - 1 dependent package - 1 dependent repositories - 11 downloads last month - 5 stars on GitHub - 1 maintainer
Top 6.2% on npmjs.org
bionode-fasta 0.5.6
Streamable FASTA parser
13 versions - Latest release: about 7 years ago - 4 dependent packages - 11 dependent repositories - 45 downloads last month - 14 stars on GitHub - 3 maintainers
@opentrons/discovery-client 3.6.5
Node.js client for discovering Opentrons robots on the network
2 versions - Latest release: over 5 years ago - 1 dependent package - 12 dependent repositories - 4 downloads last month - 384 stars on GitHub - 5 maintainers
chise 3.0.0
SBGNPD editing library
7 versions - Latest release: about 4 years ago - 1 dependent package - 3 dependent repositories - 12 downloads last month - 15 stars on GitHub - 6 maintainers
node-red-contrib-biotools-analysis 0.0.2
bioinformatics package for node-red (genomic analysis)
2 versions - Latest release: about 2 years ago - 1 dependent package - 8 downloads last month - 1 stars on GitHub - 1 maintainer
Top 2.9% on npmjs.org
smiles-drawer 2.1.7
A SMILES drawer and parser. Generate molecular structure depictions in pure JavaScript.
27 versions - Latest release: over 1 year ago - 5 dependent packages - 40 dependent repositories - 12.8 thousand downloads last month - 400 stars on GitHub - 1 maintainer
pixcellular 2.8.6
Small grid framework to create ecosystem models and simulations
59 versions - Latest release: 10 months ago - 1 dependent package - 133 downloads last month - 0 stars on GitHub - 1 maintainer
libsbmljs_core 5.18.0-beta1
A WebAssembly/JavaScript SBML library
4 versions - Latest release: about 5 years ago - 1 dependent package - 14 downloads last month - 5 stars on GitHub - 1 maintainer
sgd_visualization2 1.0.13
[![Build Status](https://travis-ci.org/yeastgenome/sgd_visualization.svg)](https://travis-ci.org/...
2 versions - Latest release: about 4 years ago - 6 downloads last month - 3 stars on GitHub - 1 maintainer
biojs-vis-circular-bar-chart 0.1.0
A circular bar chart component for visualising allele frequencies, expression levels, number of s...
1 version - Latest release: almost 8 years ago - 1 dependent package - 1 dependent repositories - 3 downloads last month - 1 maintainer
globus-js 2.7.0
A package for interacting with the globus.org REST API.
12 versions - Latest release: almost 8 years ago - 1 dependent package - 1 dependent repositories - 51 downloads last month - 3 stars on GitHub - 1 maintainer
sgd_visualization5 2.0.2
[![Build Status](https://travis-ci.org/yeastgenome/sgd_visualization.svg)](https://travis-ci.org/...
1 version - Latest release: 12 months ago - 9 downloads last month - 3 stars on GitHub - 1 maintainer
@legumeinfo/taxon-symbology 1.0.0
A TypeScript library for consistent coloring of visualizations by genus & species
2 versions - Latest release: 3 months ago - 6 downloads last month - 1 stars on GitHub - 4 maintainers
sgd_visualization 2.0.2
[![Build Status](https://travis-ci.org/yeastgenome/sgd_visualization.svg)](https://travis-ci.org/...
20 versions - Latest release: 12 months ago - 1 dependent package - 3 dependent repositories - 88 downloads last month - 3 stars on GitHub - 5 maintainers
wikipathways-api-client 1.1.7
JS client for the WikiPathways.org webservices API
11 versions - Latest release: about 4 years ago - 1 dependent repositories - 18 downloads last month - 2 stars on GitHub - 4 maintainers
@fabilab/atlasapprox 0.2.10
JavaScript APIs for Cell Atlas Approximations
17 versions - Latest release: 23 days ago - 1 dependent repositories - 214 downloads last month - 0 stars on GitHub - 1 maintainer
atlasapprox 0.1.5 unpublished
JavaScript APIs for Cell Atlas Approximations
6 versions - Latest release: 11 months ago - 320 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.5% on npmjs.org
node-ncbi 0.7.3
Access and parse the NCBI eUtils API in Node or the Browser
17 versions - Latest release: about 1 year ago - 3 dependent packages - 12 dependent repositories - 678 downloads last month - 13 stars on GitHub - 1 maintainer
population-simulation 1.0.7
NPM package that runs population (genetics) simulations based on Hardy-Weinberg principles
7 versions - Latest release: about 1 year ago - 1 dependent package - 12 downloads last month - 1 stars on GitHub - 1 maintainer
mmcif-parser 2.0.1
utility for parsing mmCIF files into JSON format
54 versions - Latest release: over 1 year ago - 2 dependent packages - 65 downloads last month - 0 stars on GitHub - 1 maintainer
taxon 0.0.14
lookup ids for taxa
14 versions - Latest release: about 8 years ago - 1 dependent repositories - 33 downloads last month - 0 stars on GitHub - 1 maintainer
proteins 1.1.0
standardized system of protein nomenclature and identification
4 versions - Latest release: about 9 years ago - 1 dependent package - 1 dependent repositories - 9 downloads last month - 0 stars on GitHub - 1 maintainer
mecu-utils 0.1.1
A simple melting curves TSV parser
2 versions - Latest release: over 6 years ago - 1 dependent package - 1 dependent repositories - 6 downloads last month - 1 stars on GitHub - 1 maintainer
genome-browser 1.0.19
<div id="top"></div> <!-- *** Thanks for checking out the Best-README-Template. If you have a sug...
35 versions - Latest release: over 2 years ago - 2 dependent packages - 104 downloads last month - 1 maintainer
biojs 2.0.0
Represent biological data on the web
1 version - Latest release: over 9 years ago - 1 dependent package - 1 dependent repositories - 13 downloads last month - 484 stars on GitHub - 1 maintainer
gnomic-grammar 0.3.4
A grammar for describing microbial genotypes and phenotypes.
20 versions - Latest release: over 7 years ago - 3 dependent packages - 1 dependent repositories - 50 downloads last month - 6 stars on GitHub - 1 maintainer
lexicon-mono-seq 1.4.1
LexiconMonoSeq, DOM Text based MSA visualization written in Javascript
26 versions - Latest release: almost 5 years ago - 1 dependent package - 1 dependent repositories - 83 downloads last month - 19 stars on GitHub - 1 maintainer
ops.js 7.0.0
Javascript based library to access the Open PHACTS API and discover bio-chemical and life science...
6 versions - Latest release: over 7 years ago - 2 dependent packages - 1 dependent repositories - 48 downloads last month - 2 stars on GitHub - 3 maintainers
constellation-js 2.0.0
Constellation is a tool for parsing a language specifying genetic parts and their relationships
3 versions - Latest release: almost 4 years ago - 1 dependent package - 1 dependent repositories - 117 downloads last month - 9 stars on GitHub - 1 maintainer
d3-lexicon 1.0.2
Collection of high performance data visualization libraries
3 versions - Latest release: over 6 years ago - 1 dependent package - 1 dependent repositories - 11 downloads last month - 30 stars on GitHub - 1 maintainer
Top 3.9% on npmjs.org
clustergrammer 1.19.5
This is a clustergram implemented in D3.js. I started from the example http://bost.ocks.org/mike/...
74 versions - Latest release: about 6 years ago - 9 dependent packages - 5 dependent repositories - 112 downloads last month - 229 stars on GitHub - 1 maintainer
bionode-fastq 2.2.0
Streamable FASTQ parser
3 versions - Latest release: over 6 years ago - 1 dependent package - 1 dependent repositories - 13 downloads last month - 1 maintainer
sbgn-renderer 1.1.1
A library that renders SBGN
3 versions - Latest release: about 7 years ago - 1 dependent repositories - 6 downloads last month - 1 maintainer
genome-browser-hnd 1.2.21
<div id="top"></div> <!-- *** Thanks for checking out the Best-README-Template. If you have a sug...
43 versions - Latest release: over 2 years ago - 1 dependent package - 117 downloads last month - 1 maintainer
pssh-parser 0.1.51
A simple pssh parser
7 versions - Latest release: about 8 years ago - 1 dependent package - 1 dependent repositories - 23 downloads last month - 3 stars on GitHub - 1 maintainer
Top 9.0% on npmjs.org
@ebi-gene-expression-group/react-ebi-species 2.6.2
React component based on the EBI species icons
14 versions - Latest release: almost 2 years ago - 4 dependent packages - 7 dependent repositories - 39 downloads last month - 3 stars on GitHub - 5 maintainers
Top 7.6% on npmjs.org
@opentrons/shared-data 0.1.5
Shared system definitions and utilities for Opentrons robots and software
30 versions - Latest release: 3 months ago - 1 dependent package - 3 dependent repositories - 202 downloads last month - 384 stars on GitHub - 5 maintainers
@labdao/openlab-cli 0.0.3
LabDAO OpenLab CLI
3 versions - Latest release: over 2 years ago - 1 dependent package - 6 downloads last month - 19 stars on GitHub - 1 maintainer
nt-seq-ts 0.0.3
Nucleotide sequence manipulation and analysis library
2 versions - Latest release: almost 6 years ago - 1 dependent package - 1 dependent repositories - 14 downloads last month - 0 stars on GitHub - 1 maintainer
ancestry 2.0.3
Ancestry: a package for visualization of lineage data
16 versions - Latest release: over 6 years ago - 3 dependent packages - 1 dependent repositories - 53 downloads last month - 15 stars on GitHub - 1 maintainer
plotify 1.2.4
AngularJS module with interactive lineage chart components based on D3.js
21 versions - Latest release: almost 8 years ago - 1 dependent package - 1 dependent repositories - 31 downloads last month - 15 stars on GitHub - 1 maintainer
@opentrons/components 0.1.5
React components library for Opentrons' projects
37 versions - Latest release: 3 months ago - 3 dependent repositories - 301 downloads last month - 384 stars on GitHub - 5 maintainers
amoeba-life-cycle 1.0.0
A simple module that simulates the life cycle of an amoeba at the molecular level by using a (sem...
1 version - Latest release: about 1 year ago - 2 dependent packages - 11 downloads last month - 1 maintainer
molstar-svelte 0.0.6
Mol* Svelte Components
6 versions - Latest release: 9 months ago - 16 downloads last month - 1 maintainer
@legumeinfo/web-components 1.4.0
Web Components for the Legume Information System and other AgBio databases
5 versions - Latest release: 4 months ago - 10 downloads last month - 5 stars on GitHub - 4 maintainers
Top 8.0% on npmjs.org
bridgedb 6.2.7
JS client for BridgeDb.org ID mapping framework webservices
61 versions - Latest release: over 3 years ago - 4 dependent packages - 9 dependent repositories - 199 downloads last month - 4 stars on GitHub - 4 maintainers
Top 8.3% on npmjs.org
cacatoo 1.1.10
Building, exploring, and sharing spatially structured models
12 versions - Latest release: 8 months ago - 2 dependent packages - 2 dependent repositories - 283 downloads last month - 11 stars on GitHub - 1 maintainer
biohacker 1.0.0
A nodeschool workshop for learning how to use bionode for bioinformatics
1 version - Latest release: over 9 years ago - 1 dependent package - 1 dependent repositories - 4 downloads last month - 4 stars on GitHub - 3 maintainers
sbolgraph 0.51.0
A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/Ty...
50 versions - Latest release: over 2 years ago - 1 dependent package - 3 dependent repositories - 111 downloads last month - 4 stars on GitHub - 1 maintainer
Top 9.0% on npmjs.org
@gmod/jbrowse 1.16.6
JBrowse - client-side genome browser
30 versions - Latest release: almost 5 years ago - 1 dependent package - 3 dependent repositories - 343 downloads last month - 457 stars on GitHub - 6 maintainers
genomediff 1.7.1
Parses strings from files in the GenomeDiff format generated by the breseq variant caller for hap...
28 versions - Latest release: about 8 years ago - 1 dependent package - 1 dependent repositories - 46 downloads last month - 2 stars on GitHub - 2 maintainers
moljs 1.0.0
Molfile parser/visualizer in JavaScript
1 version - Latest release: over 8 years ago - 2 dependent packages - 1 dependent repositories - 13 downloads last month - 5 stars on GitHub - 1 maintainer
Top 6.0% on npmjs.org
cytoscape-sbgn-stylesheet 4.0.2
cytoscape.js stylesheet for sbgn PD glyphs
8 versions - Latest release: over 3 years ago - 2 dependent packages - 5 dependent repositories - 306 downloads last month - 54 stars on GitHub - 3 maintainers
Top 8.7% on npmjs.org
sbgnml-to-cytoscape 4.0.4
A tool to convert sbgn-ml files to json for Cytoscape.js
12 versions - Latest release: almost 6 years ago - 3 dependent packages - 5 dependent repositories - 73 downloads last month - 5 stars on GitHub - 3 maintainers
Top 7.7% on npmjs.org
sboljs 3.0.2
A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/Ty...
79 versions - Latest release: about 2 years ago - 6 dependent packages - 9 dependent repositories - 130 downloads last month - 4 stars on GitHub - 2 maintainers
seqviz 3.10.7
A viewer for DNA, RNA, and protein sequences that supports many input formats
146 versions - Latest release: 2 months ago - 5 dependent repositories - 11.8 thousand downloads last month - 206 stars on GitHub - 3 maintainers
@phantomas1234/seqviz 3.3.10
DNA sequence viewer. Supports custom, GenBank, FASTA, or NCBI accession input
2 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 14 downloads last month - 206 stars on GitHub - 1 maintainer
seqviz-dlw 3.7.15
A viewer for DNA, RNA, and protein sequences that supports many input formats
4 versions - Latest release: about 1 year ago - 17 downloads last month - 206 stars on GitHub - 1 maintainer