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An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

proxy.golang.org "microscopy" keyword

Top 9.6% on proxy.golang.org
github.com/brainglobe/cellfinder v1.11.0
Automated 3D cell detection in very large images
48 versions - Latest release: 8 days ago - 232 stars on GitHub
Top 5.7% on proxy.golang.org
github.com/brainglobe/cellfinder-core v1.0.0
Standalone cellfinder cell detection algorithm
9 versions - Latest release: almost 3 years ago - 20 stars on GitHub
Top 5.1% on proxy.golang.org
github.com/tlambert03/nd2 v0.12.0 💰
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray...
46 versions - Latest release: about 1 month ago - 81 stars on GitHub
Top 5.1% on proxy.golang.org
github.com/pymmcore-plus/useq-schema v0.9.2
An implementation agnostic schema for describing a sequence of events during a multi-dimensional ...
37 versions - Latest release: 7 months ago - 23 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/cytomining/pycytominer v1.7.1
Python package for image-based profiling
19 versions - Latest release: 3 months ago - 146 stars on GitHub
Top 6.7% on proxy.golang.org
github.com/ImSwitch/ImSwitch v2.0.0+incompatible
ImSwitch is a software solution in Python that aims at generalizing microscope control by providi...
5 versions - Latest release: almost 4 years ago - 88 stars on GitHub
Top 4.7% on proxy.golang.org
github.com/deepinv/deepinv v0.4.2
DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning
13 versions - Latest release: 2 months ago - 839 stars on GitHub
Top 4.4% on proxy.golang.org
github.com/kevinjohncutler/omnipose v1.1.4
Omnipose: a high-precision solution for morphology-independent cell segmentation
26 versions - Latest release: 9 months ago - 166 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/Dana-Farber-AIOS/pathml v3.0.8+incompatible
Tools for computational pathology
21 versions - Latest release: 3 months ago - 467 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/dana-farber-aios/pathml v3.0.8+incompatible
Tools for computational pathology
21 versions - Latest release: 3 months ago - 467 stars on GitHub
Top 6.7% on proxy.golang.org
github.com/computational-cell-analytics/micro-sam v1.8.14
Segment Anything for Microscopy
37 versions - Latest release: about 2 months ago - 742 stars on GitHub
Top 5.1% on proxy.golang.org
github.com/pymmcore-plus/pymmcore-plus v0.18.1
Pure python/C++ micro-manager ecosystem
73 versions - Latest release: 7 months ago - 56 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/brainglobe/brainreg-napari v0.1.4
Automated 3D brain registration in napari with support for multiple species and atlases.
5 versions - Latest release: almost 3 years ago - 17 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/axondeepseg/axondeepseg v5.5.0+incompatible
Axon/Myelin segmentation using Deep Learning
13 versions - Latest release: 7 months ago - 129 stars on GitHub
Top 5.7% on proxy.golang.org
github.com/cytomining/cytominer v0.2.2
Methods for Image-Based Cell Profiling
3 versions - Latest release: over 6 years ago - 52 stars on GitHub
github.com/google-research/sofima v0.0.0-20260909172506-c3d38ad90826 removed
Scalable Optical Flow-based Image Montaging and Alignment
2 versions - Latest release: about 2 months ago - 103 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/turagalab/decode v0.10.2
This is the official implementation of our publication "Deep learning enables fast and dense sing...
7 versions - Latest release: over 3 years ago - 122 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/TuragaLab/DECODE v0.10.2
This is the official implementation of our publication "Deep learning enables fast and dense sing...
7 versions - Latest release: over 3 years ago - 123 stars on GitHub
Top 4.4% on proxy.golang.org
github.com/alleninstitute/biofile-finder v9.4.0+incompatible
An open-use web application created for easy access, collaboration, and sharing of datasets throu...
110 versions - Latest release: about 1 month ago - 22 stars on GitHub
Top 4.6% on proxy.golang.org
github.com/okunator/cellseg_models.pytorch v0.1.29
Encoder-Decoder Cell and Nuclei segmentation models
29 versions - Latest release: about 1 year ago - 109 stars on GitHub
Top 5.1% on proxy.golang.org
github.com/georgeoshardo/SyMBac v0.5.1
Accurate segmentation of bacterial microscope images using deep learning synthetically generated ...
2 versions - Latest release: 8 months ago - 23 stars on GitHub
Top 5.1% on proxy.golang.org
github.com/georgeoshardo/symbac v0.5.1
Accurate segmentation of bacterial microscope images using deep learning synthetically generated ...
2 versions - Latest release: 8 months ago - 23 stars on GitHub
Top 4.9% on proxy.golang.org
github.com/wsilabs/opentile-go v0.63.0
Package opentile provides utilities to read tiles from whole-slide imaging (WSI) TIFF files.
85 versions - Latest release: 3 months ago - 0 stars on GitHub
github.com/WSILabs/opentile-go v0.62.0
Go library for reading whole-slide pathology images — raw compressed-tile extraction and decoded ...
84 versions - Latest release: 3 months ago - 0 stars on GitHub
Top 6.7% on proxy.golang.org
github.com/delmic/odemis v3.8.4+incompatible
Open Delmic Microscope Software
112 versions - Latest release: 3 months ago - 56 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/jungmannlab/picasso v0.11.3
A collection of tools for painting super-resolution images
57 versions - Latest release: about 1 month ago - 148 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/tlambert03/LLSpy v0.5.1 💰
Lattice light-sheet post-processing utility.
3 versions - Latest release: over 2 years ago - 30 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/tlambert03/llspy v0.5.1 💰
Lattice light-sheet post-processing utility.
3 versions - Latest release: over 2 years ago - 30 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/pycroscopy/atomai v0.8.1
Deep and Machine Learning for Microscopy
30 versions - Latest release: over 1 year ago - 231 stars on GitHub
Top 5.3% on proxy.golang.org
github.com/zudi-lin/pytorch_connectomics v1.0.0
PyTorch Connectomics: segmentation toolbox for EM connectomics
1 version - Latest release: over 1 year ago - 202 stars on GitHub
Top 5.6% on proxy.golang.org
github.com/planktoscope/planktoscope v2.2.1+incompatible
Open and Affordable Quantitative Imaging Platform
2 versions - Latest release: over 5 years ago - 92 stars on GitHub
Top 5.6% on proxy.golang.org
github.com/PlanktoScope/PlanktoScope v2.2.1+incompatible
Open and Affordable Quantitative Imaging Platform
2 versions - Latest release: over 5 years ago - 92 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/allencellmodeling/napari-aicsimageio v0.7.2
Multiple file format reading directly into napari using pure Python
19 versions - Latest release: about 4 years ago - 39 stars on GitHub
Top 8.2% on proxy.golang.org
github.com/AllenCellModeling/napari-aicsimageio v0.7.2
Multiple file format reading directly into napari using pure Python
19 versions - Latest release: about 4 years ago - 39 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/davidbhr/CompactionAnalyzer v1.0.2
A python package to analyze the matrix fiber orientation and intensity around cells in fiber matr...
2 versions - Latest release: about 4 years ago - 12 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/davidbhr/compactionanalyzer v1.0.2
A python package to analyze the matrix fiber orientation and intensity around cells in fiber matr...
2 versions - Latest release: about 4 years ago - 12 stars on GitHub
Top 5.6% on proxy.golang.org
github.com/WeisongZhao/Palette.ui v0.5.3
v0.5.4, Multi-color imaging tool to merge frames.
2 versions - Latest release: over 7 years ago - 5 stars on GitHub
Top 5.6% on proxy.golang.org
github.com/weisongzhao/palette.ui v0.5.3
v0.5.4, Multi-color imaging tool to merge frames.
2 versions - Latest release: over 7 years ago - 5 stars on GitHub
Top 5.6% on proxy.golang.org
github.com/WeisongZhao/Sparse-SIM v1.0.3
Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3
1 version - Latest release: almost 5 years ago - 101 stars on GitHub
Top 5.6% on proxy.golang.org
github.com/weisongzhao/sparse-sim v1.0.3
Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3
1 version - Latest release: almost 5 years ago - 101 stars on GitHub
Top 4.7% on proxy.golang.org
github.com/pycroscopy/pycroscopy v0.63.3
Scientific analysis of nanoscale materials imaging data
6 versions - Latest release: over 2 years ago - 280 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/elisabethkugler/zfvascularquantification v2.0.1+incompatible
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
2 versions - Latest release: almost 5 years ago - 11 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/ElisabethKugler/ZFVascularQuantification v2.0.1+incompatible
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
2 versions - Latest release: almost 5 years ago - 11 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/cytomining/cytominer-database v0.3.5
[DEPRECATED] A package for storing morphological profiling data.
9 versions - Latest release: about 2 years ago - 10 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/ziatdinovmax/gpim v0.3.9
Gaussian processes and Bayesian optimization for images and hyperspectral data
16 versions - Latest release: over 5 years ago - 57 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/jhsmit/colicoords v0.1.2
Single-cell fluorescence microscopy data analysis
3 versions - Latest release: almost 8 years ago - 26 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/allencellmodeling/aicsimageio v4.14.0+incompatible
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
56 versions - Latest release: about 3 years ago - 221 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/Jhsmit/ColiCoords v0.1.2
Single-cell fluorescence microscopy data analysis
3 versions - Latest release: almost 8 years ago - 26 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/brainglobe/bg-atlasapi v3.0.1+incompatible
A Python interface to access neuroanatomical atlases
29 versions - Latest release: 3 months ago - 187 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/ziatdinovmax/GPim v0.3.9
Gaussian processes and Bayesian optimization for images and hyperspectral data
16 versions - Latest release: over 5 years ago - 57 stars on GitHub
Top 6.7% on proxy.golang.org
github.com/imswitch/imswitch v2.0.0+incompatible
ImSwitch is a software solution in Python that aims at generalizing microscope control by providi...
5 versions - Latest release: almost 4 years ago - 88 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/lens-biophotonics/zetastitcher v0.7.0
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light...
10 versions - Latest release: over 4 years ago - 46 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/lens-biophotonics/ZetaStitcher v0.7.0
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light...
10 versions - Latest release: over 4 years ago - 46 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/AllenCellModeling/aicsimageio v4.14.0+incompatible
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
56 versions - Latest release: about 3 years ago - 221 stars on GitHub
Top 9.6% on proxy.golang.org
github.com/david-hoffman/pyotf v0.0.3
python functions for simulating optical transfer functions
2 versions - Latest release: about 4 years ago - 86 stars on GitHub
Related Keywords
image-processing 14 deep-learning 12 pytorch 9 python 9 fluorescence-microscopy-imaging 8 segmentation 8 imaging 7 image-analysis 7 machine-learning 7 super-resolution 6 digital-pathology 5 microscopy-images 5 electron-microscopy 4 napari 4 histopathology 4 biomedical-image-processing 4 neuroscience 4 imageio 4 pathology 4 registration 4 matlab-gui 4 medical-imaging 3 smlm 3 cell-segmentation 3 jpeg2000 2 golang 2 dicom 2 deepzoom 2 aperio 2 localization-microscopy 2 high-density 2 ndpi 2 openslide 2 svs 2 tiff 2 whole-slide-imaging 2 wsi 2 lattice-models 2 hyperspectral-images 2 gaussian-processes 2 colab-notebook 2 nuclei-segmentation 2 deconvolution 2 image-restoration 2 synthetic-dataset-generation 2 synthetic-data 2 synthetic-biology 2 biology 2 matlab 2 traction-force-microscopy 2 tfm 2 orientation 2 mechanobiology 2 fibrosis 2 fibers 2 ecm 2 contractility 2 collagen 2 cell-mechanics 2 fluorescence 2 multi-color 2 cell-detection 2 gpu 2 zebrafish 2 profiling 2 light-sheet 2 connectomics 2 spatial-transcriptomics 2 research 2 pathml 2 computational-pathology 2 water 2 science 2 raspberry-pi-camera 2 raspberry-pi-4 2 planktoscope 2 plankton 2 oceanography 2 ocean 2 microscope-platform 2 microscope 2 citizen-science 2 citizen 2 brain 2 atlases 2 bayesian-optimization 2 bio-formats 2 cellpose 2 bioimage-analysis 2 dask 2 image-metadata 2 scientific-computing 2 scientific-formats 2 xarray 2 stitching 2 volumetric-images 2 fiji 2 fiji-macro-language 2 lightsheet 2 microscopy-data 2