pypi.org "NGS" keyword
View the packages on the pypi.org package registry that are tagged with the "NGS" keyword.
iridauploader 0.9.5
IRIDA uploader: upload NGS data to IRIDA system19 versions - Latest release: about 1 month ago - 1 dependent repositories - 135 downloads last month - 8 stars on GitHub - 2 maintainers
fdstools 2.1.1
Forensic DNA Sequencing Tools15 versions - Latest release: about 1 year ago - 2 dependent repositories - 594 downloads last month - 5 stars on GitHub - 1 maintainer
sequana-mapper 1.3.1
A multi-sample mapper to map reads onto a reference26 versions - Latest release: 8 months ago - 1 dependent repositories - 61 downloads last month - 5 stars on GitHub - 1 maintainer
vcftoolz 1.2.3
Tools for working with Variant Call Format files.7 versions - Latest release: about 2 years ago - 1 dependent repositories - 30 downloads last month - 12 stars on GitHub - 2 maintainers
Top 2.0% on pypi.org
50 versions - Latest release: 6 months ago - 7 dependent packages - 74 dependent repositories - 14.4 thousand downloads last month - 1,162 stars on GitHub - 1 maintainer
multiqc 1.27.1
Create aggregate bioinformatics analysis reports across many samples and tools50 versions - Latest release: 6 months ago - 7 dependent packages - 74 dependent repositories - 14.4 thousand downloads last month - 1,162 stars on GitHub - 1 maintainer
Top 4.3% on pypi.org
59 versions - Latest release: 21 days ago - 1 dependent package - 4 dependent repositories - 18.2 thousand downloads last month - 263 stars on GitHub - 4 maintainers
nf-core 3.3.2
Helper tools for use with nf-core Nextflow pipelines.59 versions - Latest release: 21 days ago - 1 dependent package - 4 dependent repositories - 18.2 thousand downloads last month - 263 stars on GitHub - 4 maintainers
Top 5.1% on pypi.org
105 versions - Latest release: 1 day ago - 12 dependent packages - 14 dependent repositories - 492 downloads last month - 146 stars on GitHub - 1 maintainer
sequana 0.19.2
A set of standalone application and pipelines dedicated to NGS analysis105 versions - Latest release: 1 day ago - 12 dependent packages - 14 dependent repositories - 492 downloads last month - 146 stars on GitHub - 1 maintainer
relecov-tools 1.6.1
Tools for managing and proccessing relecov network data.17 versions - Latest release: 1 day ago - 2 dependent repositories - 230 downloads last month - 7 stars on GitHub - 3 maintainers
bio-aid 0.3.1
Genetic Analysis Tools22 versions - Latest release: almost 2 years ago - 9 downloads last month - 1 maintainer
solida 0.9.7
NGS pipelines bootstrapper23 versions - Latest release: over 4 years ago - 1 dependent repositories - 32 downloads last month - 6 stars on GitHub - 1 maintainer
custardpy 0.7.6
Hi-C analysis tools by Python355 versions - Latest release: about 1 month ago - 135 downloads last month - 5 stars on GitHub - 1 maintainer
cutseq 0.0.67 💰
Automatically cut adapter / barcode / UMI from NGS data67 versions - Latest release: about 1 month ago - 320 downloads last month - 14 stars on GitHub - 1 maintainer
pycircos 1.0.2
This Tools is Design for NGS Circos Plot with using Python.2 versions - Latest release: over 5 years ago - 1 dependent repositories - 240 downloads last month - 6 stars on GitHub - 1 maintainer
freebarcodes 3.1.0
FREE Divergence Error-Correcting DNA Barcodes7 versions - Latest release: almost 3 years ago - 1 dependent repositories - 27 downloads last month - 27 stars on GitHub - 1 maintainer
samsift 0.2.5
SAMsift - sift your alignments6 versions - Latest release: over 7 years ago - 1 dependent repositories - 37 downloads last month - 21 stars on GitHub - 1 maintainer
seqcluster 1.2.8
Small RNA-seq pipeline39 versions - Latest release: over 4 years ago - 3 dependent repositories - 64 downloads last month - 37 stars on GitHub - 1 maintainer
seqtables 0.11
Package for efficient analysis of next generation sequencing amplicon data using numpy and datafr...2 versions - Latest release: over 5 years ago - 1 dependent repositories - 11 downloads last month - 5 stars on GitHub - 1 maintainer
sequana-pacbio-qc 1.0.1
QC on various type of pacbio data5 versions - Latest release: about 2 years ago - 1 dependent repositories - 9 downloads last month - 146 stars on GitHub - 1 maintainer
pysalsa 0.1.0
convert between bioinformatics formats1 version - Latest release: over 3 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 1 maintainer
ngs-analysis 0.0.6
Analyze deep sequencing of complex libraries6 versions - Latest release: over 1 year ago - 10 downloads last month - 0 stars on GitHub - 1 maintainer
freediv10xcellbcs 0.0a1
FREE divergence-based decoding of 10X cell barcodes1 version - Latest release: almost 3 years ago - 4 downloads last month - 0 stars on GitHub - 1 maintainer
sequana-quality-control 0.10.0
A quality control pipeline for illumina data set. This pipeline removes contaminants (e.g. Phix),...5 versions - Latest release: over 3 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
geo-upload-tool 1.0.8
CLI tool for preparing data submission to Gene Expression Omnibus9 versions - Latest release: about 4 years ago - 1 dependent repositories - 74 downloads last month - 1 maintainer
anacore 3.1.0
Libraries for managing standard file formats and objects from NGS.11 versions - Latest release: over 1 year ago - 1 dependent repositories - 50 downloads last month - 4 stars on GitHub - 1 maintainer
reviewer2 0.9.31
Starts a simple image server that lets you quickly flip through image files from a local director...24 versions - Latest release: almost 4 years ago - 1 dependent repositories - 116 downloads last month - 20 stars on GitHub - 1 maintainer
multiqc-msk 1.11.dev0
Create aggregate bioinformatics analysis reports across many samples and tools1 version - Latest release: about 4 years ago - 1 dependent repositories - 12 downloads last month - 1,328 stars on GitHub - 1 maintainer
flipbook 1.2.2
Starts a simple image server that lets you quickly flip through image files from a local director...22 versions - Latest release: about 1 year ago - 1 dependent repositories - 186 downloads last month - 20 stars on GitHub - 1 maintainer
multiqc-sgr 1.21.4
Create aggregate bioinformatics analysis reports across many samples and tools8 versions - Latest release: about 1 year ago - 72 downloads last month - 0 stars on GitHub - 1 maintainer
bacpage 2024.3.8
An easy-to-use pipeline for the assembly and analysis of bacterial genomes3 versions - Latest release: over 1 year ago - 32 downloads last month - 7 stars on GitHub - 1 maintainer
seqtk-rs 0.2.0
This is a sequence processing tool written in Rust for manipulating FASTA/FASTQ files. Pure rust ...1 version - Latest release: 8 days ago - 3 stars on GitHub - 1 maintainer
massgenotyping 0.2.2
Python package for microsatellite genotyping from amplicon sequencing data5 versions - Latest release: over 1 year ago - 1 dependent repositories - 66 downloads last month - 7 stars on GitHub - 1 maintainer
biosniff 1.0.0
A sniffer for biological data formats5 versions - Latest release: almost 3 years ago - 2 dependent repositories - 114 downloads last month - 3 stars on GitHub - 1 maintainer
mirge-build 0.0.1
miRge-build: Building libraries of small RNA sequencing Data1 version - Latest release: almost 5 years ago - 1 dependent repositories - 15 downloads last month - 2 stars on GitHub - 1 maintainer
sequana-depletion 0.3.0
A pipeline to deplete reads from a given reference3 versions - Latest release: over 1 year ago - 1 dependent repositories - 11 downloads last month - 1 stars on GitHub - 1 maintainer
assnake 0.8.9
System for metagenomics data analysis8 versions - Latest release: over 5 years ago - 1 dependent repositories - 12 downloads last month - 11 stars on GitHub - 1 maintainer
buisciii-tools 2.2.12
Tools for managing and resolution of buisciii services.10 versions - Latest release: 11 days ago - 144 downloads last month - 2 stars on GitHub - 2 maintainers
nanogo-basecaller 0.1.7
A bioinformatics pipeline for basecalling ONT NGS Data.8 versions - Latest release: 3 months ago - 31 downloads last month - 1 maintainer
sequana-sphinxext 1.0.0
A set of sphinx extension for Sequana pipelines, wrappers and rules3 versions - Latest release: over 3 years ago - 1 dependent repositories - 31 downloads last month - 0 stars on GitHub - 1 maintainer
mirge3 0.1.4
Comprehensive analysis of small RNA sequencing Data14 versions - Latest release: over 2 years ago - 1 dependent repositories - 123 downloads last month - 26 stars on GitHub - 1 maintainer
varbscore 1.0.3
A python package to calculate varBscore using vcf input4 versions - Latest release: over 4 years ago - 1 dependent repositories - 3 downloads last month - 0 stars on GitHub - 1 maintainer
megaqc 0.2.0
Collect and visualise data across multiple MultiQC runs2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 27 downloads last month - 97 stars on GitHub - 1 maintainer
sequana-bioconvert 1.1.0
description: convert NGS format from one to another using bioconvert5 versions - Latest release: over 1 year ago - 1 dependent repositories - 20 downloads last month - 1 stars on GitHub - 1 maintainer
s-rna-tools 0.0.3
Tools for handling Small RNA sequences.3 versions - Latest release: over 2 years ago - 6 downloads last month - 0 stars on GitHub - 1 maintainer
spritefridge 1.4.0
A python toolbox for processing SPRITE-seq within the cooler universe18 versions - Latest release: 6 months ago - 99 downloads last month - 0 stars on GitHub - 1 maintainer
telomerehunter 1.1.0
Estimation of Telomere Content from WGS Data6 versions - Latest release: over 6 years ago - 2 dependent repositories - 74 downloads last month - 2 maintainers
sequana-denovo 0.10.0
Multi-sample denovo assembly of FastQ sequences (short read)8 versions - Latest release: over 1 year ago - 1 dependent repositories - 41 downloads last month - 5 stars on GitHub - 1 maintainer
irida-uploader-cl 0.2
IRIDA uploader: upload NGS data to IRIDA system2 versions - Latest release: almost 6 years ago - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 1 maintainer
c3s 1.0.0
Python Modules for XXXXXXXX1 version - Latest release: almost 8 years ago - 14 downloads last month - 1 maintainer
sequana-variant-calling 1.3.0
A multi-sample variant calling pipeline25 versions - Latest release: 5 months ago - 1 dependent repositories - 77 downloads last month - 0 stars on GitHub - 1 maintainer
prophyle 0.1.0
ProPhyle metagenomic classifier54 versions - Latest release: over 8 years ago - 1 dependent repositories - 351 downloads last month - 35 stars on GitHub - 1 maintainer
slamdunk 0.4.3
SLAMdunk suite for analyzing SLAM-seq data12 versions - Latest release: over 5 years ago - 1 dependent repositories - 62 downloads last month - 48 stars on GitHub - 1 maintainer
gmarrayfilter 1.0.3
A python package to filter SNP array data4 versions - Latest release: over 3 years ago - 1 dependent repositories - 13 downloads last month - 1 maintainer
papolarity 1.1.2
Papolarity is a tool to analyze polarity of transcriptomic alignments such as Ribo-seq and RNA-seq.21 versions - Latest release: over 3 years ago - 1 dependent repositories - 119 downloads last month - 1 stars on GitHub - 1 maintainer
mvirs 1.1.1
mVIRs: Localisation of inducible prophages using NGS data1 version - Latest release: over 3 years ago - 1 dependent repositories - 6 downloads last month - 13 stars on GitHub - 1 maintainer
de-toolkit 0.9.12
Suite of tools for working with count data29 versions - Latest release: over 5 years ago - 1 dependent repositories - 222 downloads last month - 1 maintainer
multiqc-jupyterlab-helper 1.12.1.dev0
Create aggregate bioinformatics analysis reports across many samples and tools2 versions - Latest release: over 3 years ago - 1 dependent repositories - 6 downloads last month - 1,327 stars on GitHub - 1 maintainer
smallgenomeutilities 0.5.2
A collection of scripts that are useful for dealing with viral RNA NGS data.8 versions - Latest release: 2 months ago - 1 dependent repositories - 43 downloads last month - 11 stars on GitHub - 3 maintainers
jupyterngsplugin 0.0.13a3
Jupyter notebook plugin for Bioinformatics NGS data analysis9 versions - Latest release: over 5 years ago - 2 dependent repositories - 91 downloads last month - 0 stars on gitlab.com - 1 maintainer
sequana-multitax 0.12.2
A multi-sample and multi-databases taxonomic analysis using Kraken13 versions - Latest release: 12 months ago - 1 dependent repositories - 34 downloads last month - 1 maintainer
goenrichment 1.0.3
GO enrichment analysis from a list of gene names using a precomputed database10 versions - Latest release: over 3 years ago - 3 dependent repositories - 93 downloads last month - 0 stars on gitlab.com - 1 maintainer
wonderpeaks-preprocessing 0.2.4
preprocessing functions for ChIP-seq and RNA-seq in Fungi with WonderPeaks14 versions - Latest release: 4 months ago - 35 downloads last month - 0 stars on GitHub - 1 maintainer
pasio 1.1.3
Pasio is a tool for segmentation and denosing DNA coverage profiles coming from high-throughput s...5 versions - Latest release: 7 months ago - 1 dependent repositories - 47 downloads last month - 1 stars on GitHub - 1 maintainer
sequana-fastqc 1.9.0
A multi-sample fastqc pipeline from Sequana project36 versions - Latest release: 9 months ago - 1 dependent repositories - 158 downloads last month - 4 stars on GitHub - 1 maintainer
cirrus-ngs 1.0.0a1
Cloud-optimized primary analysis pipelines for RNA-seq, miRNA-seq, ChIP-seq, and variant calling ...1 version - Latest release: about 7 years ago - 1 dependent repositories - 13 downloads last month - 8 stars on GitHub - 1 maintainer
assnake-core-preprocessing 0.5.2
Reads preprocessing module for assnake2 versions - Latest release: over 5 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
hydra-genetics 3.2.0
Helper tools for use with hydra-genetics pipelines.65 versions - Latest release: 3 months ago - 23 dependent repositories - 3.19 thousand downloads last month - 3 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
2 versions - Latest release: about 6 years ago - 2 dependent repositories - 72 downloads last month - 1 maintainer
sequenza-utils 3.0.0
Analysis of cancer sequencing samples, utilities for the sequenza R package2 versions - Latest release: about 6 years ago - 2 dependent repositories - 72 downloads last month - 1 maintainer
counhto 1.1.0
Python package for generating and demultiplexing hash tag oligo count matrices from cellranger ou...2 versions - Latest release: over 2 years ago - 20 downloads last month - 0 stars on GitHub - 1 maintainer
fastcontext 2022.8.30
A tool for identification of adapters and other sequence patterns in the next generation sequenci...3 versions - Latest release: almost 3 years ago - 16 downloads last month - 2 stars on GitHub - 1 maintainer
pymasc 0.3.2
Python implementation to calc mappability-sensitive cross-correlation for fragment length estimat...12 versions - Latest release: over 5 years ago - 1 dependent repositories - 45 downloads last month - 2 stars on GitHub - 1 maintainer
metatrim 1.0.4
Trim reads from metabarcoding libraries5 versions - Latest release: about 3 years ago - 90 downloads last month - 1 maintainer
strnaming 1.2.0
STRNaming STR Sequence Nomenclature8 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 83 downloads last month - 1 stars on GitHub - 1 maintainer
vfind 0.4.0
Simple variant finding utilities for NGS data6 versions - Latest release: 29 days ago - 263 downloads last month - 1 stars on GitHub - 1 maintainer
crispr-cas9 0.3.4
script for indels counting in sequencing data6 versions - Latest release: about 4 years ago - 1 dependent repositories - 30 downloads last month - 4 stars on GitHub - 1 maintainer
bedspec 0.7.0
An HTS-specs compliant BED toolkit.7 versions - Latest release: 3 months ago - 119 downloads last month - 0 stars on GitHub - 1 maintainer
wonderpeaks 0.1.14
functions for peakcalling enriched peaks in ChIP-seq and untranslateed regions in 3'RNA-seq in Fungi15 versions - Latest release: 6 months ago - 51 downloads last month - 0 stars on GitHub - 1 maintainer
microflex 0.1.0
Cross-platform Python toolkit for microbiome analysis using multiple sequencing technologies1 version - Latest release: 2 months ago - 134 downloads last month - 1 maintainer
amulety 1.1
Python package to create embeddings of BCR amino acid sequences.2 versions - Latest release: 3 months ago - 31 downloads last month - 2 maintainers
gostrat 0.0.8
Tool to stratify GO terms based on first significant parent8 versions - Latest release: about 5 years ago - 1 dependent repositories - 30 downloads last month - 1 maintainer
sequana-revcomp 1.1.0
reverse complement a set of FastQ files8 versions - Latest release: over 1 year ago - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 1 maintainer
sequana-downsampling 0.9.0
downsample NGS data sets5 versions - Latest release: almost 3 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
bioconvert 1.1.1
convert between bioinformatics formats32 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 156 downloads last month - 378 stars on GitHub - 1 maintainer
sequdas-qc 1.0.1
Sequence Upload and Data Archiving System2 versions - Latest release: almost 6 years ago - 1 dependent repositories - 97 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
40
sequencing
24
snakemake
16
sequana
11
next generation sequencing
11
biology
11
ngs
9
python
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pipeline
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analysis
6
pypi
5
quality control
5
quality-control
4
alignment
4
RNA-seq
4
bwa
4
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4
rna-seq
4
coverage
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taxonomy
3
vizualisation
3
seqera
3
reporting
3
workflow
3
multiqc
3
data-visualization
3
bioconda
3
minimap2
3
metagenomics
3
bio
3
genomics
3
sequence
3
Yeast
2
Reseq
2
SNP
2
nanopore
2
Fungi
2
dynamic UTR
2
UTR
2
peak calling
2
SAM
2
barcodes
2
WonderPeaks
2
ChIP-seq
2
Python
2
ngs-analysis
2
HTS
2
DATA
2
denovo
2
assembly
2
METAGENOMIC
2
ILLUMINA
2
curation
2
STRs
2
REviewer
2
read visualization
2
machine learning
2
bacteria
2
fastq
2
bioinformatics tools
2
small RNA analysis
2
phylogeny
2
de-novo
2
pacbio
2
STR
2
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2
variant-calling
2
forensics
2
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2
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2
IRIDA
2
3D genome
2
read
2
barcode
2
Jupyter
2
cellranger
1
slamseq
1
quant-seq
1
transcription
1
docker-image
1
computational-biology
1
SLAMSeq
1
adapters
1
QuantSeq
1
structure
1
ChIP-Seq
1
sanger
1
kraken
1
SARS-CoV-2
1
HIV-1
1
CRAM
1
BAM
1
prophages
1
oprs
1
Prophages
1
OPRs
1
segmentation
1
denoise
1
pipelines
1