pypi.org "RNA" keyword
View the packages on the pypi.org package registry that are tagged with the "RNA" keyword.
entrain-spatial 0.0.1
A single-cell analysis package to elucidate environmental factors controlling cell differentiatio...1 version - Latest release: almost 2 years ago - 59 downloads last month - 1 maintainer
rnajena-sugar 0.8.0
A Python framework for bioinformatics10 versions - Latest release: 10 days ago - 392 downloads last month - 4 stars on GitHub - 1 maintainer
pyfurnace 0.0.1
An integrated design engine for RNA origami1 version - Latest release: 2 days ago - 1 maintainer
multimolecule 0.0.6
Accelerate Molecular Biology Research with Machine Learning12 versions - Latest release: 4 months ago - 2.88 thousand downloads last month - 31 stars on GitHub - 1 maintainer
cellsnake 0.2.0
cellsnake14 versions - Latest release: almost 2 years ago - 367 downloads last month - 34 stars on GitHub - 1 maintainer
smiffer 0.2.0 💰
Compute possible interaction with fields arround protein or RNA.7 versions - Latest release: 3 months ago - 268 downloads last month - 11,422 stars on GitHub - 1 maintainer
promotercalculator 1.2.4
Salis Lab's promoter-calculator (Barrick Lab Fork)5 versions - Latest release: 8 months ago - 1 dependent package - 1 dependent repositories - 198 downloads last month - 1 stars on GitHub - 2 maintainers
pytransform 0.2.3 💰
Applies transformation to structures and writes new pdb file14 versions - Latest release: about 9 years ago - 5 dependent repositories - 860 downloads last month - 45 stars on GitHub - 1 maintainer
rnaglib 3.4.2
RNAglib: Tools for learning on the structure of RNA using 2.5D geometric representations84 versions - Latest release: 4 days ago - 1 dependent repositories - 3.13 thousand downloads last month - 12 stars on GitHub - 2 maintainers
rnabench 0.1.2
RNA benchmarking tools and utilities.2 versions - Latest release: over 1 year ago - 47 downloads last month - 1 maintainer
rnaviewparser 0.1.3
A RNAVIEW parser1 version - Latest release: about 6 years ago - 1 dependent repositories - 45 downloads last month - 1 maintainer
parephase 0.1.0
Detects phasing of 5'PARE data around stop codons1 version - Latest release: almost 8 years ago - 1 dependent repositories - 29 downloads last month - 0 stars on GitHub - 1 maintainer
vica 0.1.5
find highly divergent DNA and RNA viruses in microbiomes3 versions - Latest release: about 7 years ago - 1 dependent repositories - 129 downloads last month - 5 stars on GitHub - 1 maintainer
ipanemap 0.1.6
integrative probing analysis of nucleic acids empowered by multiple accessibility profiles7 versions - Latest release: almost 3 years ago - 1 dependent repositories - 266 downloads last month - 1 maintainer
trxtools 0.3.0
Python tools facilitating bioinformatic analysis of nascent transcripts and transcriptomic data.4 versions - Latest release: 3 months ago - 90 downloads last month - 2 stars on GitHub - 1 maintainer
utrbert 1.0.1
Deciphering 3'UTR mediated gene regulation using interpretable deep representation learning2 versions - Latest release: over 1 year ago - 60 downloads last month - 11 stars on GitHub - 1 maintainer
fuchs 0.3.1
FUll circular RNA CHaracterization from RNA-Seq2 versions - Latest release: about 2 years ago - 1 dependent repositories - 76 downloads last month - 3 stars on GitHub - 1 maintainer
ifpd2q 1.0.4
An iFISH probe design pipeline (II)5 versions - Latest release: about 1 year ago - 2 dependent packages - 204 downloads last month - 0 stars on GitHub - 1 maintainer
taurenmd 0.11.2
A command-line interface for analysis routines in Molecular Dynamics data.40 versions - Latest release: almost 3 years ago - 1 dependent repositories - 638 downloads last month - 8 stars on GitHub - 1 maintainer
open-feishu 0.0.5
Python SDK for Feishu / Lark6 versions - Latest release: 9 months ago - 296 downloads last month - 0 stars on GitHub - 1 maintainer
mirmachine 0.2.13
MirMachine24 versions - Latest release: about 1 year ago - 1 dependent repositories - 380 downloads last month - 4 stars on GitHub - 1 maintainer
rnascrutiny 1.3
Tool for simulating and analyzing single-cell RNA-sequencing data.13 versions - Latest release: about 7 years ago - 1 dependent repositories - 194 downloads last month - 1 maintainer
reditools3 3.3
A new REDItools implementation to speed-up the RNA editing profiling in massive RNAseq data3 versions - Latest release: about 1 month ago - 267 downloads last month - 1 stars on GitHub - 1 maintainer
learna-tools 0.1.0 💰
RNA Design with automated reinforcement learning.1 version - Latest release: about 1 year ago - 60 downloads last month - 5 stars on GitHub - 1 maintainer
pyrna 1.0.0.dev4 💰
View RNA secondary structure and BLAST search it for identification4 versions - Latest release: almost 7 years ago - 2 dependent repositories - 108 downloads last month - 5,193 stars on GitHub - 1 maintainer
bpfold 0.2.4 💰
Deep generalizable prediction of RNA secondary structure via base pair motif energy.3 versions - Latest release: 12 days ago - 4 stars on GitHub - 1 maintainer
cpat 3.0.5
CPAT (Coding Potential Assessment Tool).7 versions - Latest release: about 1 year ago - 426 downloads last month - 11 stars on GitHub - 1 maintainer
ifpd 2.1.1
An iFISH probe design pipeline, with web interface included.21 versions - Latest release: over 3 years ago - 1 dependent repositories - 426 downloads last month - 11 stars on GitHub - 1 maintainer
fish-prode 1.1.0
A FISH probe design web interface.3 versions - Latest release: over 6 years ago - 1 dependent repositories - 119 downloads last month - 11 stars on GitHub - 1 maintainer
vizitig 1.0.3
A python manipulation and visualization of genomic graph data4 versions - Latest release: 3 months ago - 185 downloads last month - 82 stars on GitHub - 2 maintainers
tivar 0.1.1
Translation Initiation Variation2 versions - Latest release: 6 months ago - 49 downloads last month - 0 stars on GitHub - 1 maintainer
umitools 0.3.4
A toolset for handling sequencing data with unique molecular identifiers (UMIs)3 versions - Latest release: almost 7 years ago - 2 dependent repositories - 140 downloads last month - 15 stars on GitHub - 1 maintainer
sccoda 0.1.9
A Dirichlet-Multinomial approach to identify compositional changes in count data.11 versions - Latest release: about 2 years ago - 1 dependent repositories - 870 downloads last month - 157 stars on GitHub - 1 maintainer
arv 0.9.2
A fast 23andMe raw genome file parser11 versions - Latest release: about 8 years ago - 480 downloads last month - 118 stars on GitHub - 1 maintainer
s-rna-tools 0.0.3
Tools for handling Small RNA sequences.3 versions - Latest release: over 2 years ago - 74 downloads last month - 0 stars on GitHub - 1 maintainer
cryptkeeper 1.0.1
Package for predicting functional components of DNA sequences3 versions - Latest release: 8 months ago - 145 downloads last month - 2 stars on GitHub - 2 maintainers
Top 3.0% on pypi.org
34 versions - Latest release: 4 months ago - 28 dependent packages - 34 dependent repositories - 7.62 thousand downloads last month - 431 stars on GitHub - 2 maintainers
scvelo 0.3.3
RNA velocity generalized through dynamical modeling34 versions - Latest release: 4 months ago - 28 dependent packages - 34 dependent repositories - 7.62 thousand downloads last month - 431 stars on GitHub - 2 maintainers
bioprot 0.2.0
A package for DNA, RNA and protein sequence manipulation1 version - Latest release: 11 months ago - 55 downloads last month - 1 stars on GitHub - 1 maintainer
topicvelo 0.0.2
TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems2 versions - Latest release: over 1 year ago - 55 downloads last month - 16 stars on GitHub - 1 maintainer
entrain 0.0.79
A single-cell analysis package to elucidate environmental factors controlling cell differentiatio...16 versions - Latest release: over 1 year ago - 658 downloads last month - 1 maintainer
shannonca 0.0.9
Informative Dimensionality Reduction via Shannon Component Analysis9 versions - Latest release: 4 months ago - 1 dependent repositories - 261 downloads last month - 29 stars on GitHub - 1 maintainer
rnadecoder 1.0.4
Use genetic code table as a basis for translating a strand of mRNA.1 version - Latest release: over 2 years ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
pyjellyfish 1.3.1
Python interface to the Jellfish DNA k-mer counter6 versions - Latest release: 9 months ago - 2 dependent packages - 1 dependent repositories - 131 downloads last month - 4 stars on GitHub - 2 maintainers
ifpd2 1.0.1a1
An iFISH probe design pipeline (II)2 versions - Latest release: over 3 years ago - 1 dependent repositories - 79 downloads last month - 2 stars on GitHub - 1 maintainer
congas 0.0.78
Copy Number genotyping from single cell RNA sequencing63 versions - Latest release: over 1 year ago - 1.74 thousand downloads last month - 11 stars on GitHub - 1 maintainer
arnie 0.2.6
A Python utility library to estimate, compare, and reweight RNA energetics across many secondary ...17 versions - Latest release: about 2 months ago - 1 dependent repositories - 1.84 thousand downloads last month - 101 stars on GitHub - 1 maintainer
rrmscorer 1.0.11
RRM-RNA score predictor7 versions - Latest release: 19 days ago - 261 downloads last month - 1 maintainer
metagene 0.0.0.dev54
Metagene Profiling Analysis and Visualization46 versions - Latest release: 11 months ago - 873 downloads last month - 1 maintainer
sshmm 1.0.7
A sequence-structure hidden Markov model for the analysis of RNA-binding protein data.11 versions - Latest release: almost 7 years ago - 1 dependent repositories - 228 downloads last month - 1 maintainer
steprna 1.0.6
Align short RNA seqeuncing reads to determine the length of of overhang.9 versions - Latest release: about 2 years ago - 1 dependent repositories - 283 downloads last month - 4 stars on GitHub - 1 maintainer
farseernmr 2.0.0.dev0
A software suite for automatic treatment, analysis and plotting of large and multivariable datase...1 version - Latest release: about 5 years ago - 1 dependent repositories - 55 downloads last month - 10 stars on GitHub - 1 maintainer
fqutils 0.0.0.dev6
fastq file utils in python5 versions - Latest release: over 7 years ago - 1 dependent repositories - 108 downloads last month - 1 maintainer
pyseacr 0.3
Sparse Enrichment Analysis for CUT&RUN1 version - Latest release: about 1 year ago - 57 downloads last month - 0 stars on GitHub - 1 maintainer
congas-old 0.0.4
Copy Number genotyping from single cell RNA sequencing4 versions - Latest release: over 3 years ago - 121 downloads last month - 11 stars on GitHub - 1 maintainer
unirna 0.0.1
The Large-Scale Pre-Trained Model for RNA1 version - Latest release: almost 2 years ago - 55 downloads last month - 1 maintainer
bpforms 0.0.16
Unambiguous representation of modified DNA, RNA, and proteins12 versions - Latest release: almost 5 years ago - 7 dependent repositories - 265 downloads last month - 6 stars on GitHub - 2 maintainers
oligo-melting 2.0.2
A Python3 package for melting temperature calculation of oligonucleotides hybridization and secon...8 versions - Latest release: about 4 years ago - 1 dependent repositories - 191 downloads last month - 12 stars on GitHub - 1 maintainer
Top 10.0% on pypi.org
8 versions - Latest release: 6 months ago - 7 dependent packages - 3 dependent repositories - 7.37 thousand downloads last month - 295 stars on GitHub - 2 maintainers
viennarna 2.7.0
A library for the prediction and comparison of RNA secondary structures.8 versions - Latest release: 6 months ago - 7 dependent packages - 3 dependent repositories - 7.37 thousand downloads last month - 295 stars on GitHub - 2 maintainers
linearfold-unofficial 0.1
Python interface to LinearFold, a linear-time RNA secondary structure prediction tool1 version - Latest release: over 1 year ago - 1 dependent package - 219 downloads last month - 2 stars on GitHub - 1 maintainer
variant2pubmed 0.0.1
Search for human genetic variants in pubmed using text-mining techniques1 version - Latest release: over 1 year ago - 2 dependent repositories - 1 maintainer
coalispr 0.7.8
Small RNA-Seq analysis starting from bedgraph files4 versions - Latest release: 6 months ago - 63 downloads last month - 1 maintainer
sprint 0.1.7
A toolkit for accurately identifying RNA editing sites without the need to filter SNPs16 versions - Latest release: almost 8 years ago - 1 dependent repositories - 233 downloads last month - 1 maintainer
drtransformer 1.0
Heuristic cotranscriptional folding using the nearest neighbor energy model.1 version - Latest release: about 2 years ago - 68 downloads last month - 5 stars on GitHub - 1 maintainer
intron 0.1.0
Intron retention tool2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 98 downloads last month - 2 stars on GitHub - 1 maintainer
linearpartition-unofficial 0.3
Python interface to LinearPartition, a linear-time RNA secondary structure prediction tool3 versions - Latest release: 9 months ago - 174 downloads last month - 3 stars on GitHub - 1 maintainer
deepprotein 0.0.0
General Framework for Deep Learning on Macro Molecules1 version - Latest release: over 1 year ago - 41 downloads last month - 0 stars on GitHub - 1 maintainer
nuclearacids 0.0.0
Nuclear Acids1 version - Latest release: 9 months ago - 55 downloads last month - 0 stars on GitHub - 1 maintainer
rnabert 0.0.1
RNA BERT1 version - Latest release: about 1 year ago - 55 downloads last month - 1 maintainer
Related Keywords
DNA
24
bioinformatics
17
biology
8
Protein
5
python
5
protein
5
dna
5
single cell
5
cell
5
fluorescence
4
hybridization
4
secondary structure
4
FISH
4
hacktoberfest
4
oligonucleotide
4
rna
4
genome
4
deep-learning
4
velocity
4
sequence
4
tensorflow
3
ViennaRNA
3
transcriptomics
3
structure
3
fish
3
ifish-probe
3
single-cell
3
design
3
scRNA
3
Bioinformatics
3
sequencing
3
machine-learning
3
computational
2
bio
2
stochastic
2
deep
2
rna-seq
2
proteins
2
Proteins
2
Structural Biology
2
Molecular Biology
2
Biochemistry
2
miRNA
2
prediction
2
editing
2
genomics
2
secondary
2
scDNA
2
CNV
2
gui
2
CNA
2
ifish
2
web-interface
2
Cancer
2
Copy-number
2
probe
2
Barrick
2
Bio
2
analysis
2
Biology
2
differentiation
2
ligand
2
receptor
2
RNA structure
2
predictor
1
RRM
1
pysam
1
pyCRAC
1
RNA structure prediction
1
bedgraph
1
bam
1
cotranscriptional folding
1
intron
1
mRNA
1
structural-biology
1
bio2byte
1
metagene
1
sshmm
1
CLIP-Seq
1
RBP
1
RNA-binding
1
motif
1
HMM
1
Dicer
1
pandas
1
matplotlib
1
LVG
1
Genomic
1
snps
1
pipeline
1
NGS
1
next generation sequencing
1
CryptKeeper
1
RBS
1
dynamical
1
genetics
1
chromosomes
1
inheritance
1
heredity
1
topic modeling
1