Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "bioinformatics" keyword
seqr-loader 1.2.5
The hail scripts in this repo can be used to pre-process variant callsets and export them to elas...18 versions - Latest release: about 2 years ago - 1 dependent repositories - 109 downloads last month - 0 stars on GitHub - 2 maintainers
wgse-ng 0.0.2a0
Whole Genome Sequencing data manipulation tool1 version - Latest release: 1 day ago - 2 stars on GitHub - 2 maintainers
boink 0.0.0
boink: streaming de Bruijn graph compaction and sketching.2 versions - Latest release: over 4 years ago - 1 dependent repositories - 13 downloads last month - 8 stars on GitHub - 2 maintainers
mssw 0.1.5
Modern Cpp binding for complete-striped-smith-watern-library5 versions - Latest release: over 1 year ago - 45 downloads last month - 3 stars on GitHub - 2 maintainers
dispbind 1.0.2
Disorder protein genomic binding analysis toolkit2 versions - Latest release: over 1 year ago - 15 downloads last month - 2 stars on GitHub - 1 maintainer
sv2 1.4.3
SV2: Support Vector Structural Variation Genotyper10 versions - Latest release: about 6 years ago - 1 dependent repositories - 202 downloads last month - 57 stars on GitHub - 2 maintainers
Top 4.0% on pypi.org
38 versions - Latest release: almost 2 years ago - 2 dependent packages - 14 dependent repositories - 7.11 thousand downloads last month - 346 stars on GitHub - 1 maintainer
pdb-tools 2.5.0
A swiss army knife for PDB files.38 versions - Latest release: almost 2 years ago - 2 dependent packages - 14 dependent repositories - 7.11 thousand downloads last month - 346 stars on GitHub - 1 maintainer
geneflow3 3.0.0a1
A light-weight, extendable workflow engine for scientific computing.1 version - Latest release: over 2 years ago - 1 dependent repositories - 17 downloads last month - 0 stars on GitHub - 2 maintainers
Top 8.9% on pypi.org
38 versions - Latest release: about 2 hours ago - 2 dependent packages - 3 dependent repositories - 495 downloads last month - 25 stars on GitHub - 2 maintainers
seqlogo 5.29.9
Python port of the R Bioconductor `seqlogo` package38 versions - Latest release: about 2 hours ago - 2 dependent packages - 3 dependent repositories - 495 downloads last month - 25 stars on GitHub - 2 maintainers
trailblazer 21.5.6
Trailblazer is a tool to manage and track state of analyses259 versions - Latest release: about 3 hours ago - 1 dependent package - 1 dependent repositories - 2.08 thousand downloads last month - 5 stars on GitHub - 6 maintainers
scoring-matrices 0.1.0
Dependency free, Cython-compatible scoring matrices to use with biological sequences.1 version - Latest release: about 3 hours ago - 0 stars on GitHub - 1 maintainer
gccov 1.0.3
Visualize gc & coverage.5 versions - Latest release: over 3 years ago - 1 dependent repositories - 34 downloads last month - 0 stars on GitHub - 2 maintainers
bioscripts.convert 0.4
Biopython scripts for converting molecular sequences between formats.2 versions - Latest release: over 12 years ago - 2 dependent repositories - 16 downloads last month - 2 maintainers
Top 9.7% on pypi.org
342 versions - Latest release: 18 days ago - 3 dependent repositories - 2.6 thousand downloads last month - 17 stars on GitHub - 5 maintainers
resolwe-bio 55.4.0
Bioinformatics pipelines for the Resolwe platform342 versions - Latest release: 18 days ago - 3 dependent repositories - 2.6 thousand downloads last month - 17 stars on GitHub - 5 maintainers
isoenum 0.4.1
InChI generator.12 versions - Latest release: over 4 years ago - 1 dependent repositories - 22 downloads last month - 3 stars on GitHub - 4 maintainers
moldf 0.7.5
Super lightweight and fast mmCIF/PDB/MOL2 file parser into Pandas DataFrames and backwards writer.6 versions - Latest release: 7 months ago - 83 downloads last month - 7 stars on GitHub - 2 maintainers
setriq 1.6.4
Python package written in C++ for pairwise distance computation for sequences.11 versions - Latest release: over 1 year ago - 1 dependent repositories - 291 downloads last month - 15 stars on GitHub - 2 maintainers
bfscan 0.0.4
bfscan is designed to detect foodborne pathogens using bloom filter and machine learning4 versions - Latest release: about 1 year ago - 18 downloads last month - 1 maintainer
structuremap 0.0.9
An open-source Python package of the AlphaPept ecosystem9 versions - Latest release: about 1 year ago - 1 dependent repositories - 169 downloads last month - 25 stars on GitHub - 2 maintainers
cromshell-draft-release 2.0.0
Command Line Interface (CLI) for Cromwell servers1 version - Latest release: about 1 year ago - 22 downloads last month - 53 stars on GitHub - 2 maintainers
pipestat 0.9.1
A pipeline results reporter36 versions - Latest release: 9 days ago - 3 dependent packages - 3 dependent repositories - 18.1 thousand downloads last month - 4 stars on GitHub - 2 maintainers
ngstk 0.0.1rc2
Next-generation sequencing utility functions3 versions - Latest release: almost 5 years ago - 1 dependent repositories - 29 downloads last month - 1 stars on GitHub - 4 maintainers
hmmerclust 0.0.1.dev5
Detection and analysis of gene clusters in bacterial genomes.5 versions - Latest release: almost 9 years ago - 3 dependent repositories - 57 downloads last month - 0 stars on GitHub - 2 maintainers
pyranges1 0.1.1
GenomicRanges for Python.2 versions - Latest release: 2 days ago - 251 downloads last month - 2 stars on GitHub - 2 maintainers
Top 9.0% on pypi.org
119 versions - Latest release: 9 days ago - 1 dependent repositories - 6.77 thousand downloads last month - 3 stars on GitHub - 1 maintainer
gencove 2.16.2
Gencove API and CLI tool119 versions - Latest release: 9 days ago - 1 dependent repositories - 6.77 thousand downloads last month - 3 stars on GitHub - 1 maintainer
pypop-genomics 1.0.2
PyPop: Python for Population Genomics20 versions - Latest release: 2 months ago - 2.38 thousand downloads last month - 19 stars on GitHub - 1 maintainer
contextualized-ml 0.2.7
A statistical machine learning toolbox for estimating models, distributions, and functions with s...9 versions - Latest release: 4 months ago - 103 downloads last month - 59 stars on GitHub - 1 maintainer
yasim 3.2.0
Yet Another SIMulator for Alternative Splicing Events and Realistic Gene Expression Profile2 versions - Latest release: 4 months ago - 1 dependent package - 37 downloads last month - 0 stars on GitHub - 1 maintainer
autopvs1-batch 2.0
A tool for batch run autoPVS11 version - Latest release: over 2 years ago - 1 dependent repositories - 14 downloads last month - 28 stars on GitHub - 2 maintainers
wags-tails 0.1.3
Data acquisition tools for Wagnerds4 versions - Latest release: about 1 month ago - 2 dependent packages - 1.93 thousand downloads last month - 0 stars on GitHub - 2 maintainers
biotdg 0.1.0
Bioinformatics Test Data Generator1 version - Latest release: over 4 years ago - 1 dependent repositories - 23 downloads last month - 1 stars on GitHub - 4 maintainers
cromtool 1.4
Development tool for Cromwell5 versions - Latest release: about 8 years ago - 2 dependent repositories - 26 downloads last month - 960 stars on GitHub - 1 maintainer
cxio 0.3.0
Utility to parse CX JSON streams3 versions - Latest release: over 8 years ago - 2 dependent repositories - 14 downloads last month - 1 stars on GitHub - 2 maintainers
Top 4.7% on pypi.org
27 versions - Latest release: 4 months ago - 10 dependent packages - 37 dependent repositories - 4.65 thousand downloads last month - 78 stars on GitHub - 1 maintainer
vcfpy 0.13.8
Python 3 VCF library with good support for both reading and writing27 versions - Latest release: 4 months ago - 10 dependent packages - 37 dependent repositories - 4.65 thousand downloads last month - 78 stars on GitHub - 1 maintainer
pyopal 0.5.2
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.15 versions - Latest release: 2 months ago - 1 dependent repositories - 2.48 thousand downloads last month - 7 stars on GitHub - 2 maintainers
cirrocumulus 1.1.57
Bring your single-cell data to life143 versions - Latest release: 7 months ago - 1 dependent repositories - 1.36 thousand downloads last month - 64 stars on GitHub - 3 maintainers
plinkliftover 0.5.2
Converts genotype data stored in plink's PED+MAP format from one genome build to another, using l...7 versions - Latest release: 8 months ago - 1 dependent repositories - 64 downloads last month - 4 stars on GitHub - 2 maintainers
bambu-qsar 0.0.18
bambu (bioassays model builder) is CLI tool to build QSAR models based on PubChem BioAssays datasets13 versions - Latest release: 11 months ago - 1 dependent repositories - 67 downloads last month - 3 stars on GitHub - 2 maintainers
grabseqs 0.7.0
Easily download reads from next-gen sequencing repositories like NCBI SRA11 versions - Latest release: over 4 years ago - 1 dependent repositories - 86 downloads last month - 101 stars on GitHub - 1 maintainer
nanorepeat 1.4.1
NanoRepeat: quantification of Short Tandem Repeats (STRs) from long-read sequencing data6 versions - Latest release: 12 months ago - 45 downloads last month - 15 stars on GitHub - 2 maintainers
sars2seq 0.1.0
Python library and scripts for working with SARS-CoV-2 sequences.7 versions - Latest release: about 2 years ago - 1 dependent repositories - 23 downloads last month - 2 stars on GitHub - 1 maintainer
opentargets-checkomatic 0.2.5
This package handles the Open Targets data checking.9 versions - Latest release: over 5 years ago - 1 dependent repositories - 66 downloads last month - 1 stars on GitHub - 2 maintainers
pxblat 1.1.20
A native python binding for blat suite25 versions - Latest release: 3 months ago - 481 downloads last month - 10 stars on GitHub - 2 maintainers
seqann 1.0.0
Sequence Annotation44 versions - Latest release: over 5 years ago - 1 dependent package - 1 dependent repositories - 203 downloads last month - 5 stars on GitHub - 2 maintainers
drep 3.5.0
De-replication of microbial genomes assembled from multiple samples63 versions - Latest release: 2 months ago - 1 dependent repositories - 545 downloads last month - 234 stars on GitHub - 1 maintainer
Top 7.2% on pypi.org
5 versions - Latest release: over 4 years ago - 6 dependent repositories - 251 downloads last month - 557 stars on GitHub - 1 maintainer
grakel-dev 0.1a6
A scikit-learn compatible library for graph kernels5 versions - Latest release: over 4 years ago - 6 dependent repositories - 251 downloads last month - 557 stars on GitHub - 1 maintainer
bio-transformers 0.1.17
Wrapper on top of ESM/Protbert model in order to easily work with protein embedding28 versions - Latest release: about 2 years ago - 1 dependent repositories - 230 downloads last month - 131 stars on GitHub - 2 maintainers
Top 5.8% on pypi.org
33 versions - Latest release: 4 months ago - 25 dependent repositories - 2.5 thousand downloads last month - 612 stars on GitHub - 1 maintainer
plantcv 4.2.1
An image processing package for plant phenotyping.33 versions - Latest release: 4 months ago - 25 dependent repositories - 2.5 thousand downloads last month - 612 stars on GitHub - 1 maintainer
de-toolkit 0.9.12
Suite of tools for working with count data29 versions - Latest release: over 4 years ago - 1 dependent repositories - 169 downloads last month - 2 maintainers
preqc-lr 1.2
Quality control tool for long read sequencing data2 versions - Latest release: over 6 years ago - 1 dependent repositories - 18 downloads last month - 4 stars on GitHub - 2 maintainers
deepinteract 1.0.9
A geometric deep learning pipeline for predicting protein interface contacts.9 versions - Latest release: over 2 years ago - 1 dependent repositories - 41 downloads last month - 52 stars on GitHub - 2 maintainers
Top 6.9% on pypi.org
20 versions - Latest release: 3 months ago - 2 dependent packages - 5 dependent repositories - 1.66 thousand downloads last month - 93 stars on GitHub - 1 maintainer
cogent3 2024.2.5a1
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems ...20 versions - Latest release: 3 months ago - 2 dependent packages - 5 dependent repositories - 1.66 thousand downloads last month - 93 stars on GitHub - 1 maintainer
senseppi 0.7.1
SENSE-PPI: Sequence-based EvolutioNary ScalE Protein-Protein Interaction prediction17 versions - Latest release: 15 days ago - 208 downloads last month - 1,259 stars on GitHub - 1 maintainer
mygfa 0.1
Simple GFA parsing, printing, and pre-processing in Python.1 version - Latest release: about 1 month ago - 34 downloads last month - 24 stars on GitHub - 2 maintainers
pycomplexheatmap 1.7.3 💰
A python package to plot complex heatmap44 versions - Latest release: 7 days ago - 1.7 thousand downloads last month - 232 stars on GitHub - 1 maintainer
dumpling 0.1.3
DUMPLING: command-line app controller1 version - Latest release: almost 8 years ago - 2 dependent repositories - 19 downloads last month - 0 stars on GitHub - 2 maintainers
versionpy 0.4.11
Small utility to track and bump the version of your python tool6 versions - Latest release: almost 4 years ago - 4 dependent repositories - 56 downloads last month - 1 stars on GitHub - 2 maintainers
samcc-turbo 0.0.2
Software for automatic detection and measurement of coiled coils in PDB structures.1 version - Latest release: over 3 years ago - 1 dependent repositories - 13 downloads last month - 3 stars on GitHub - 2 maintainers
mgkit 0.5.8
Metagenomics Framework30 versions - Latest release: over 2 years ago - 2 dependent repositories - 147 downloads last month - 12 stars on GitHub - 2 maintainers
cpg-workflows 1.23.2
CPG workflows for Hail Batch98 versions - Latest release: about 14 hours ago - 1 dependent repositories - 6.14 thousand downloads last month - 0 stars on GitHub - 2 maintainers
checkbed 0.2.8
A class for checking plink bed files6 versions - Latest release: over 9 years ago - 2 dependent repositories - 21 downloads last month - 1 stars on GitHub - 2 maintainers
zfq 1.0.0
FastQ file compressor1 version - Latest release: 3 months ago - 56 downloads last month - 0 stars on GitHub - 2 maintainers
Top 1.4% on pypi.org
25 versions - Latest release: about 1 month ago - 40 dependent packages - 166 dependent repositories - 7.79 thousand downloads last month - 838 stars on GitHub - 7 maintainers
scikit-bio 0.6.0
Data structures, algorithms and educational resources for bioinformatics.25 versions - Latest release: about 1 month ago - 40 dependent packages - 166 dependent repositories - 7.79 thousand downloads last month - 838 stars on GitHub - 7 maintainers
aphylogeo 1.0.0
A phylogenetic and geographic analysis tool7 versions - Latest release: 5 months ago - 56 downloads last month - 9 stars on GitHub - 2 maintainers
autofeather-dash 2.14.2 💰
A Python framework for building reactive web-apps. Developed by Plotly.4 versions - Latest release: 5 months ago - 36 downloads last month - 20,528 stars on GitHub - 2 maintainers
Top 0.3% on pypi.org
177 versions - Latest release: about 2 months ago - 294 dependent packages - 11,467 dependent repositories - 2.81 million downloads last month - 20,528 stars on GitHub - 5 maintainers
dash 2.16.1 💰
A Python framework for building reactive web-apps. Developed by Plotly.177 versions - Latest release: about 2 months ago - 294 dependent packages - 11,467 dependent repositories - 2.81 million downloads last month - 20,528 stars on GitHub - 5 maintainers
aprile 0.1.0
Adverse Polypharmacy Reaction Intelligent Learner and Explainer (APRILE) -- An explainable machin...1 version - Latest release: over 2 years ago - 1 dependent repositories - 29 downloads last month - 7 stars on GitHub - 1 maintainer
cpg-utils 5.0.8
Library of convenience functions specific to the CPG100 versions - Latest release: 1 day ago - 3 dependent repositories - 4.79 thousand downloads last month - 0 stars on GitHub - 2 maintainers
rpbp 3.0.4
Rp-Bp: Ribosome Profiling with Bayesian Predictions5 versions - Latest release: about 2 months ago - 1 dependent package - 119 downloads last month - 7 stars on GitHub - 1 maintainer
sphae 1.31
Assembling pure culture phages from both Illumina and Nanopore sequencing technology4 versions - Latest release: 5 months ago - 23 downloads last month - 13 stars on GitHub - 1 maintainer
metamist 6.10.1
Python API for interacting with the Sample API system23 versions - Latest release: 2 days ago - 1 dependent repositories - 1.38 thousand downloads last month - 0 stars on GitHub - 2 maintainers
oncopipe 1.0.11
Functions for running Snakemake modules11 versions - Latest release: over 3 years ago - 1 dependent repositories - 106 downloads last month - 15 stars on GitHub - 1 maintainer
pdbx2df 0.6.7
Super lightweight and fast mmCIF/PDB/MOL2 file parser into Pandas DataFrames and backwards writer.22 versions - Latest release: 7 months ago - 183 downloads last month - 7 stars on GitHub - 1 maintainer
sam-alignment-reconstructor 0.0.5
SAM Alignment Reconstructor3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 4 maintainers
wbuild 1.8.0
Automatic build tool for R Reports13 versions - Latest release: over 3 years ago - 1 dependent repositories - 47 downloads last month - 4 stars on GitHub - 2 maintainers
Top 2.9% on pypi.org
17 versions - Latest release: about 1 year ago - 5 dependent packages - 29 dependent repositories - 18.1 thousand downloads last month - 684 stars on GitHub - 1 maintainer
dgllife 0.3.2
DGL-based package for Life Science17 versions - Latest release: about 1 year ago - 5 dependent packages - 29 dependent repositories - 18.1 thousand downloads last month - 684 stars on GitHub - 1 maintainer
cutseq 0.0.34 💰
Automatically cut adapter / barcode / UMI from NGS data34 versions - Latest release: 1 day ago - 2.34 thousand downloads last month - 3 stars on GitHub - 2 maintainers
camlhmp 0.1.0
Classification through yAML Heuristic Mapping Protocol2 versions - Latest release: 3 days ago - 270 downloads last month - 1 stars on GitHub - 1 maintainer
Top 9.2% on pypi.org
3 versions - Latest release: almost 2 years ago - 2 dependent packages - 4 dependent repositories - 102 downloads last month - 26 stars on GitHub - 1 maintainer
calour 2019.5.1
CALOUR: exploratory and interactive microbiome analyses based on heatmap3 versions - Latest release: almost 2 years ago - 2 dependent packages - 4 dependent repositories - 102 downloads last month - 26 stars on GitHub - 1 maintainer
Top 4.1% on pypi.org
8 versions - Latest release: over 1 year ago - 15 dependent packages - 16 dependent repositories - 9.71 thousand downloads last month - 175 stars on GitHub - 1 maintainer
harmonypy 0.0.9
A data integration algorithm.8 versions - Latest release: over 1 year ago - 15 dependent packages - 16 dependent repositories - 9.71 thousand downloads last month - 175 stars on GitHub - 1 maintainer
Top 4.9% on pypi.org
2 versions - Latest release: about 9 years ago - 10 dependent packages - 54 dependent repositories - 1.26 thousand downloads last month - 82 stars on GitHub - 2 maintainers
pytabix 0.0.2
Python interface for tabix2 versions - Latest release: about 9 years ago - 10 dependent packages - 54 dependent repositories - 1.26 thousand downloads last month - 82 stars on GitHub - 2 maintainers
rust-sasa-python 0.1.0
An ultra-fast package for computing Solvent Accessible Surface Area (SASA/ASA) for proteins1 version - Latest release: 6 days ago - 1.33 thousand downloads last month - 3 stars on GitHub - 2 maintainers
vcftoolz 1.2.3
Tools for working with Variant Call Format files.7 versions - Latest release: 11 months ago - 1 dependent repositories - 125 downloads last month - 8 stars on GitHub - 4 maintainers
vfind 0.1.0
A simple variant finder for NGS data1 version - Latest release: 18 days ago - 82 downloads last month - 1 stars on GitHub - 2 maintainers
hyphy 0.1.3
HyPhy package interface library2 versions - Latest release: over 7 years ago - 1 dependent repositories - 8 downloads last month - 194 stars on GitHub - 2 maintainers
Top 7.5% on pypi.org
8 versions - Latest release: 12 months ago - 1 dependent package - 2 dependent repositories - 176 downloads last month - 194 stars on GitHub - 3 maintainers
hyphy-python 0.1.11
HyPhy package interface library8 versions - Latest release: 12 months ago - 1 dependent package - 2 dependent repositories - 176 downloads last month - 194 stars on GitHub - 3 maintainers
pegasus-wms.dax 5.0.7
Pegasus Workflow Management System Python API8 versions - Latest release: 2 months ago - 58 downloads last month - 176 stars on GitHub - 2 maintainers
Top 4.1% on pypi.org
8 versions - Latest release: 2 months ago - 1 dependent package - 14 dependent repositories - 15.5 thousand downloads last month - 176 stars on GitHub - 2 maintainers
pegasus-wms.api 5.0.7
Pegasus Workflow Management System Python API8 versions - Latest release: 2 months ago - 1 dependent package - 14 dependent repositories - 15.5 thousand downloads last month - 176 stars on GitHub - 2 maintainers
Top 9.0% on pypi.org
8 versions - Latest release: 2 months ago - 1 dependent package - 11 dependent repositories - 71 downloads last month - 176 stars on GitHub - 3 maintainers
pegasus-wms 5.0.7
Pegasus Workflow Management System Python Codebase8 versions - Latest release: 2 months ago - 1 dependent package - 11 dependent repositories - 71 downloads last month - 176 stars on GitHub - 3 maintainers
Top 5.4% on pypi.org
8 versions - Latest release: 2 months ago - 6 dependent repositories - 15.4 thousand downloads last month - 176 stars on GitHub - 4 maintainers
pegasus-wms.common 5.0.7
Pegasus Workflow Management System Python Commons8 versions - Latest release: 2 months ago - 6 dependent repositories - 15.4 thousand downloads last month - 176 stars on GitHub - 4 maintainers
pegasus-wms.worker 5.0.7
Pegasus Workflow Management System Worker Package Tools8 versions - Latest release: 2 months ago - 2 dependent repositories - 71 downloads last month - 176 stars on GitHub - 2 maintainers
prophyle 0.1.0
ProPhyle metagenomic classifier54 versions - Latest release: about 7 years ago - 1 dependent repositories - 918 downloads last month - 31 stars on GitHub - 2 maintainers
mda-learn 0.1.1
Manifold Discovery and Analysis (MDA) algorithm for deep learning feature space analysis.2 versions - Latest release: 5 months ago - 14 downloads last month - 11 stars on GitHub - 2 maintainers
Top 1.1% on pypi.org
10 versions - Latest release: 3 months ago - 17 dependent packages - 166 dependent repositories - 116 thousand downloads last month - 564 stars on GitHub - 4 maintainers
dash-cytoscape 1.0.0 💰
A Component Library for Dash aimed at facilitating network visualization in Python, wrapped aroun...10 versions - Latest release: 3 months ago - 17 dependent packages - 166 dependent repositories - 116 thousand downloads last month - 564 stars on GitHub - 4 maintainers
disembl 2.0rc0
A refactoring/reimplementation of DisEMBL1 version - Latest release: over 7 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 2 maintainers
Top 3.1% on pypi.org
7 versions - Latest release: 8 months ago - 7 dependent packages - 11 dependent repositories - 3.3 thousand downloads last month - 34 stars on GitHub - 6 maintainers
airr 1.5.0
AIRR Community Data Representation Standard reference library for antibody and TCR sequencing data.7 versions - Latest release: 8 months ago - 7 dependent packages - 11 dependent repositories - 3.3 thousand downloads last month - 34 stars on GitHub - 6 maintainers
gen3-tracker 0.0.2
Commons utilities20 versions - Latest release: 28 days ago - 692 downloads last month - 1 stars on GitHub - 6 maintainers
gen3-util 0.0.16
Commons utilities61 versions - Latest release: 3 months ago - 548 downloads last month - 1 stars on GitHub - 4 maintainers
g3t-etl 0.0.1rc11
Commons utilities11 versions - Latest release: about 1 month ago - 109 downloads last month - 1 stars on GitHub - 4 maintainers
Top 2.1% on pypi.org
29 versions - Latest release: about 1 month ago - 22 dependent packages - 49 dependent repositories - 4.84 thousand downloads last month - 1,689 stars on GitHub - 1 maintainer
mappy 2.28
Minimap2 python binding29 versions - Latest release: about 1 month ago - 22 dependent packages - 49 dependent repositories - 4.84 thousand downloads last month - 1,689 stars on GitHub - 1 maintainer
Related Keywords
python
353
genomics
348
biology
118
ngs
114
sequencing
113
workflow
84
machine-learning
84
pipeline
83
visualization
74
science
73
protein
72
computational-biology
68
dna
66
metagenomics
65
deep-learning
61
genetics
59
sequence
51
analysis
43
hacktoberfest
43
genome
42
python3
42
alignment
41
phylogenetics
40
rna-seq
40
transcriptomics
38
fasta
38
single-cell
36
microbiome
35
bioinformatics-tool
35
data-science
34
NGS
34
workflow-engine
33
proteomics
32
bioinformatics-pipeline
31
usegalaxy
28
evolution
28
machine learning
27
systems-biology
26
transcriptome
26
chemistry
26
microbiology
25
docker
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taxonomy
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protein-structure
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vcf
25
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sequence-alignment
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pandas
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phylogeny
20
data-visualization
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fastq
19
mass-spectrometry
19
proteins
18
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18
microbial
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DNA
18
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18
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microbial-genomics
18
sequence-analysis
17
RNA-Seq
17
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