Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "biopython" keyword
Top 1.1% on pypi.org
10 versions - Latest release: 4 months ago - 20 dependent packages - 166 dependent repositories - 116 thousand downloads last month - 564 stars on GitHub - 4 maintainers
dash-cytoscape 1.0.0 💰
A Component Library for Dash aimed at facilitating network visualization in Python, wrapped aroun...10 versions - Latest release: 4 months ago - 20 dependent packages - 166 dependent repositories - 116 thousand downloads last month - 564 stars on GitHub - 4 maintainers
neatbio 0.0.2
NeatBio - a simple Yet Another BioInformatics Library for DNA Sequence2 versions - Latest release: about 4 years ago - 5 dependent repositories - 29 downloads last month - 6 stars on GitHub - 1 maintainer
perf-ssr 0.4.8
PERF is an exhaustive repeat finder10 versions - Latest release: almost 2 years ago - 1 dependent repositories - 65 downloads last month - 33 stars on GitHub - 1 maintainer
Top 3.3% on pypi.org
112 versions - Latest release: over 1 year ago - 7 dependent packages - 15 dependent repositories - 7.41 thousand downloads last month - 155 stars on GitHub - 2 maintainers
pydna 5.2.0
Representing double stranded DNA and functions for simulating cloning and homologous recombinatio...112 versions - Latest release: over 1 year ago - 7 dependent packages - 15 dependent repositories - 7.41 thousand downloads last month - 155 stars on GitHub - 2 maintainers
biographs 0.1
A package to work with protein structure networks1 version - Latest release: over 4 years ago - 1 dependent repositories - 59 downloads last month - 14 stars on GitHub - 1 maintainer
python-queen 1.1.0
QUEEN (a Python module to universally program, QUinE, and Edit Nucleotide sequences)3 versions - Latest release: almost 2 years ago - 1 dependent repositories - 28 downloads last month - 35 stars on GitHub - 1 maintainer
metadatamapping 1.2.2
A python library to fetch metadata from NCBI and MetaSRA for a list of NCBI accessions and data e...17 versions - Latest release: 2 months ago - 111 downloads last month - 1 stars on GitHub - 1 maintainer
biobear 0.20.0 💰
A package for working with Bioinformatics data with SQL and Arrow49 versions - Latest release: 27 days ago - 1 dependent package - 2.74 thousand downloads last month - 123 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
19 versions - Latest release: 3 months ago - 2 dependent repositories - 218 downloads last month - 201 stars on GitHub - 1 maintainer
seqlike 1.5.4
Unified biological sequence manipulation in Python19 versions - Latest release: 3 months ago - 2 dependent repositories - 218 downloads last month - 201 stars on GitHub - 1 maintainer
cmdrnafold 0.0.1
Primitive Vienna RNA fold interface via the commandline.1 version - Latest release: 8 months ago - 23 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
21 versions - Latest release: 14 days ago - 5 dependent packages - 5 dependent repositories - 2.2 thousand downloads last month - 94 stars on GitHub - 1 maintainer
cogent3 2024.5.7a1
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems ...21 versions - Latest release: 14 days ago - 5 dependent packages - 5 dependent repositories - 2.2 thousand downloads last month - 94 stars on GitHub - 1 maintainer
Top 0.6% on pypi.org
60 versions - Latest release: 4 months ago - 833 dependent packages - 3,405 dependent repositories - 815 thousand downloads last month - 3,908 stars on GitHub - 5 maintainers
biopython 1.83
Freely available tools for computational molecular biology.60 versions - Latest release: 4 months ago - 833 dependent packages - 3,405 dependent repositories - 815 thousand downloads last month - 3,908 stars on GitHub - 5 maintainers
mah51-biopython 1.1
Freely available tools for computational molecular biology.2 versions - Latest release: about 2 years ago - 1 dependent repositories - 32 downloads last month - 3,900 stars on GitHub - 1 maintainer
phytreeviz 0.2.0
Simple phylogenetic tree visualization python package2 versions - Latest release: 4 months ago - 61 downloads last month - 25 stars on GitHub - 1 maintainer
primerdriver 1.5.0
Automated design of mutagenic PCR primers2 versions - Latest release: about 1 year ago - 20 downloads last month - 8 stars on GitHub - 1 maintainer
vcfsynonymous 0.2.0
Detect synonymous genetic variants in VCF18 versions - Latest release: over 3 years ago - 1 dependent repositories - 73 downloads last month - 1 stars on GitHub - 1 maintainer
pylo3 1.1
creatore di alberi filogenetici1 version - Latest release: almost 3 years ago - 1 dependent repositories - 7 downloads last month - 0 stars on GitHub - 1 maintainer
phylopandas 0.8.0
Pandas for phylogenetics13 versions - Latest release: over 4 years ago - 2 dependent repositories - 128 downloads last month - 69 stars on GitHub - 2 maintainers
pandas-charm 0.3.0
A small Python library for getting character matrices (alignments) into and out of pandas6 versions - Latest release: about 5 years ago - 3 dependent repositories - 135 downloads last month - 0 stars on GitHub - 1 maintainer
orthoani 0.5.0
An implementation of the OrthoANI algorithm for nucleotide identity measurement.9 versions - Latest release: almost 3 years ago - 1 dependent repositories - 81 downloads last month - 13 stars on GitHub - 1 maintainer
moclo-ytk 0.4.0
Yeast ToolKit implementation for the base moclo library.6 versions - Latest release: almost 6 years ago - 2 dependent repositories - 36 downloads last month - 12 stars on GitHub - 1 maintainer
moclo-ecoflex 0.3.1
EcoFlex implementation for the base moclo library.5 versions - Latest release: over 5 years ago - 1 dependent repositories - 45 downloads last month - 12 stars on GitHub - 1 maintainer
gbkviz 1.2.0
Simple web application to visualize and compare genomes in Genbank files12 versions - Latest release: about 2 years ago - 1 dependent repositories - 125 downloads last month - 19 stars on GitHub - 1 maintainer
dnadrive 0.1
This Package contains utility wrappers for dnadrive1 version - Latest release: over 7 years ago - 1 dependent repositories - 10 downloads last month - 1 maintainer
discere 0.0.4
Protein Feature Extraction package for Machine Learning1 version - Latest release: over 4 years ago - 1 dependent repositories - 20 downloads last month - 16 stars on GitHub - 1 maintainer
cpt-gffparser 1.2.2
A Biopython extension package for I/O of GFF files12 versions - Latest release: about 2 years ago - 48 downloads last month - 4 stars on GitHub - 1 maintainer
bioprov 0.1.24
BioProv - Provenance capture for bioinformatics workflows26 versions - Latest release: over 2 years ago - 1 dependent repositories - 138 downloads last month - 13 stars on GitHub - 1 maintainer
bio_eutils 1.65
Standalone version of the Biopython Eutils modules2 versions - Latest release: almost 9 years ago - 16 downloads last month - 6 stars on GitHub - 1 maintainer
Top 8.0% on pypi.org
3 versions - Latest release: about 2 years ago - 3 dependent packages - 1 dependent repositories - 1.99 thousand downloads last month - 307 stars on GitHub - 1 maintainer
python-circos 0.3.0 💰
circosplot for matplotlib3 versions - Latest release: about 2 years ago - 3 dependent packages - 1 dependent repositories - 1.99 thousand downloads last month - 307 stars on GitHub - 1 maintainer
msa-cigars 0.0.1
To return CIGAR strings of a multiple sequences alignment1 version - Latest release: almost 6 years ago - 1 dependent repositories - 7 downloads last month - 2 stars on GitHub - 1 maintainer
genopy 0.0.2 removed
Analyses genetiques et phylogenetiques1 version - Latest release: almost 5 years ago - 1 dependent repositories - 9 downloads last month - 1 stars on GitHub - 1 maintainer
biopython.convert 1.3.3
Interconvert various file formats supported by biopython. Supports querying records with JMESPath.9 versions - Latest release: almost 2 years ago - 39 downloads last month - 3 stars on GitHub - 1 maintainer
gbgb 0.1.0
Goodbye, GenBank is a package for use with Biopython that gives feature annotations from GenBank ...2 versions - Latest release: about 8 years ago - 3 dependent repositories - 9 downloads last month - 14 stars on GitHub - 2 maintainers
moclo-cidar 0.4.0
CIDAR implementation for the base moclo library.5 versions - Latest release: almost 6 years ago - 1 dependent repositories - 37 downloads last month - 12 stars on GitHub - 1 maintainer
arv 0.9.2
A fast 23andMe raw genome file parser11 versions - Latest release: about 7 years ago - 221 downloads last month - 114 stars on GitHub - 1 maintainer
moclo 0.4.7
A Python implementation of the MoClo system logic.14 versions - Latest release: over 2 years ago - 2 dependent repositories - 112 downloads last month - 12 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
21
python
15
genomics
6
plasmids
5
fasta
5
phylogenetics
5
modular-cloning
4
moclo
4
modular cloning
4
synthetic biology
4
biology
4
protein
4
dna
4
system-biology
4
genbank
4
gff3
3
sequence-alignment
3
visualization
3
phylogenetic-trees
3
genome
3
protein-structure
3
pandas
3
sequence
3
matplotlib
2
jupyter-notebooks
2
gff
2
machine-learning
2
alignment
2
data-science
2
bioinformatics-analysis
1
deep
1
computational-biology
1
learning
1
machine
1
extraction
1
feature
1
DendroPy
1
dnadrive
1
webapp
1
microbial-genomics
1
genomics-visualization
1
aligned-sequences
1
comparative-genomics
1
character-matrix
1
streamlit
1
dendropy
1
ani
1
average
1
gbkviz
1
nucleotide
1
identity
1
genomic
1
taxonomy
1
average-nucleotide-identity
1
orthoani
1
python-module
1
yeast
1
bioinformatics-data
1
lycee
1
numpy
1
phylogenie
1
svt
1
convert
1
embl
1
filter
1
fastq
1
sequence-ontology
1
23andMe
1
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1
disease
1
DNA
1
gene
1
health
1
RNA
1
RSID
1
SNP
1
23andme
1
snpedia
1
snps
1
bioinformatics-pipeline
1
deep-learning
1
extract-features
1
feature-extraction
1
linux
1
protein-feature-extraction
1
protein-sequences
1
windows
1
w3c-prov
1
biological-data
1
provenance
1
prov
1
Entrez
1
Eutils
1
Medline
1
NCBI
1
circos
1
circos-plot
1
cigars
1
msa
1
genetique
1