pypi.org "cwl" keyword
View the packages on the pypi.org package registry that are tagged with the "cwl" keyword.
Top 9.2% on pypi.org
44 versions - Latest release: over 1 year ago - 2 dependent packages - 4 dependent repositories - 1.55 thousand downloads last month - 43 stars on GitHub - 3 maintainers
janis-pipelines 0.13.1
Contains classes and helpers to build a workflow, and provide options to convert to CWL / WDL44 versions - Latest release: over 1 year ago - 2 dependent packages - 4 dependent repositories - 1.55 thousand downloads last month - 43 stars on GitHub - 3 maintainers
cwlkernel 0.0.4
CWL Jupyter Notebook Kernel2 versions - Latest release: over 4 years ago - 1 dependent repositories - 83 downloads last month - 4 stars on GitHub - 1 maintainer
acclimatise 1.2.0
Acclimatise is a Python library and command-line utility for parsing the help output of a command...41 versions - Latest release: over 4 years ago - 2.4 thousand downloads last month - 14 stars on GitHub - 1 maintainer
Top 1.8% on pypi.org
435 versions - Latest release: 3 months ago - 20 dependent packages - 203 dependent repositories - 141 thousand downloads last month - 347 stars on GitHub - 1 maintainer
cwltool 3.1.20250110105449 💰
Common workflow language reference implementation435 versions - Latest release: 3 months ago - 20 dependent packages - 203 dependent repositories - 141 thousand downloads last month - 347 stars on GitHub - 1 maintainer
Top 2.6% on pypi.org
453 versions - Latest release: 2 months ago - 4 dependent packages - 37 dependent repositories - 18.8 thousand downloads last month - 909 stars on GitHub - 4 maintainers
toil 8.0.0
Pipeline management software for clusters.453 versions - Latest release: 2 months ago - 4 dependent packages - 37 dependent repositories - 18.8 thousand downloads last month - 909 stars on GitHub - 4 maintainers
toil-cwl-runner 1.0rc0
Pipeline management software for clusters using CWL.1 version - Latest release: about 4 years ago - 1 dependent repositories - 71 downloads last month - 909 stars on GitHub - 3 maintainers
Top 8.8% on pypi.org
19 versions - Latest release: almost 2 years ago - 4 dependent packages - 3 dependent repositories - 639 downloads last month - 39 stars on GitHub - 3 maintainers
janis-pipelines.unix 0.12.0
Unix tools and data types for Janis19 versions - Latest release: almost 2 years ago - 4 dependent packages - 3 dependent repositories - 639 downloads last month - 39 stars on GitHub - 3 maintainers
sevenbridges-cwl-draft2-upgrader 0.4.0
Seven Bridges CWL sbg:draft2 to v1.0 upgrader.7 versions - Latest release: over 4 years ago - 1 dependent repositories - 128 downloads last month - 6 stars on GitHub - 1 maintainer
sevenbridges-cwl 1.1.4
SBG Python library to create CWL tools and workflows5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 97 downloads last month - 20 stars on GitHub - 1 maintainer
mdps-app-generator 1.1.1
Generates an OGC compliant Unity application package using the Unity app-pack-generator.3 versions - Latest release: 4 days ago - 90 downloads last month - 0 stars on GitHub - 2 maintainers
benchmark-4dn 0.5.27
Benchmark functions that returns total space, mem, cpu given input size and parameters for the CW...26 versions - Latest release: 4 days ago - 2 dependent packages - 5 dependent repositories - 1.47 thousand downloads last month - 0 stars on GitHub - 2 maintainers
Top 5.3% on pypi.org
50 versions - Latest release: about 1 month ago - 2 dependent packages - 69 dependent repositories - 27 thousand downloads last month - 17 stars on GitHub - 4 maintainers
cwltest 2.6.20250314152537 💰
Common Workflow Language testing framework50 versions - Latest release: about 1 month ago - 2 dependent packages - 69 dependent repositories - 27 thousand downloads last month - 17 stars on GitHub - 4 maintainers
app-pack-generator 1.1.0
Generates an OGC application package from a Jupyter Notebook by parsing its it's papermill parame...2 versions - Latest release: 5 days ago - 85 downloads last month - 824 stars on GitHub - 2 maintainers
arvados-pam 2.0.4
Arvados PAM module32 versions - Latest release: over 4 years ago - 822 downloads last month - 402 stars on GitHub - 1 maintainer
arctrl 2.5.1
Library for management of Annotated Research Contexts (ARCs) using an in-memory representation an...27 versions - Latest release: 23 days ago - 1.19 thousand downloads last month - 17 stars on GitHub - 3 maintainers
Top 5.5% on pypi.org
696 versions - Latest release: 5 days ago - 11 dependent repositories - 24.6 thousand downloads last month - 402 stars on GitHub - 1 maintainer
arvados-python-client 3.1.1
Arvados client library696 versions - Latest release: 5 days ago - 11 dependent repositories - 24.6 thousand downloads last month - 402 stars on GitHub - 1 maintainer
arvados-cluster-activity 3.1.1
Summarize cluster activity from Arvados audit logs and Prometheus metrics3 versions - Latest release: 5 days ago - 197 downloads last month - 402 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
368 versions - Latest release: 5 days ago - 5 dependent repositories - 9.98 thousand downloads last month - 402 stars on GitHub - 1 maintainer
arvados-cwl-runner 3.1.1
Arvados Common Workflow Language runner368 versions - Latest release: 5 days ago - 5 dependent repositories - 9.98 thousand downloads last month - 402 stars on GitHub - 1 maintainer
arvados-user-activity 3.1.1
Summarize user activity from Arvados audit logs3 versions - Latest release: 5 days ago - 177 downloads last month - 402 stars on GitHub - 1 maintainer
crunchstat-summary 3.1.1
Arvados crunchstat-summary reads crunch log files and summarizes resource usage27 versions - Latest release: 5 days ago - 1.09 thousand downloads last month - 365 stars on GitHub - 1 maintainer
Top 6.1% on pypi.org
12 versions - Latest release: almost 5 years ago - 6 dependent packages - 3 dependent repositories - 531 downloads last month - 29 stars on GitHub - 2 maintainers
cwlgen 0.4.2
Generation of CWL programmatically. Available types: Workflow, CommandLineTool and Requirements12 versions - Latest release: almost 5 years ago - 6 dependent packages - 3 dependent repositories - 531 downloads last month - 29 stars on GitHub - 2 maintainers
Top 8.3% on pypi.org
1 version - Latest release: about 5 years ago - 1 dependent package - 25 dependent repositories - 16.4 thousand downloads last month - 5 stars on GitHub - 2 maintainers
galaxy2cwl 0.1.4
Convert a Galaxy workflow to abstract Common Workflow Language (CWL)1 version - Latest release: about 5 years ago - 1 dependent package - 25 dependent repositories - 16.4 thousand downloads last month - 5 stars on GitHub - 2 maintainers
ggr-cwl-ipynb-gen 0.5.1
IPython notebook generator for GGR CWL processing pipelines of genomic data2 versions - Latest release: 5 months ago - 1 dependent repositories - 80 downloads last month - 0 stars on GitHub - 1 maintainer
tooldog 0.3.5
Tool description generator (from https//bio.tools to XML and CWL)8 versions - Latest release: about 7 years ago - 1 dependent repositories - 203 downloads last month - 2 maintainers
Top 4.5% on pypi.org
20 versions - Latest release: 4 months ago - 10 dependent packages - 40 dependent repositories - 69.1 thousand downloads last month - 62 stars on GitHub - 3 maintainers
rocrate 0.13.0
RO-Crate metadata generator/parser20 versions - Latest release: 4 months ago - 10 dependent packages - 40 dependent repositories - 69.1 thousand downloads last month - 62 stars on GitHub - 3 maintainers
rocraters 0.4.7
Lightweight Python library for RO-Crate manipulation implemented in Rust9 versions - Latest release: 18 days ago - 2.43 thousand downloads last month - 62 stars on GitHub - 1 maintainer
nlppln 0.3.3
NLP pipeline software using common workflow language5 versions - Latest release: over 6 years ago - 1 dependent repositories - 121 downloads last month - 34 stars on GitHub - 2 maintainers
biowardrobe-airflow-analysis 1.0.20181214162558
Replaces BioWardrobe's backend with CWL Airflow4 versions - Latest release: over 6 years ago - 90 downloads last month - 5 stars on GitHub - 1 maintainer
scriptcwl 0.8.1
Tool to generate CWL workflows13 versions - Latest release: over 5 years ago - 1 dependent package - 2 dependent repositories - 239 downloads last month - 40 stars on GitHub - 2 maintainers
Top 7.6% on pypi.org
294 versions - Latest release: 5 months ago - 1 dependent package - 4 dependent repositories - 7.06 thousand downloads last month - 68 stars on GitHub - 6 maintainers
tibanna 5.5.0
Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud.294 versions - Latest release: 5 months ago - 1 dependent package - 4 dependent repositories - 7.06 thousand downloads last month - 68 stars on GitHub - 6 maintainers
mycwl 0.0.1
CWL based MySQL Database1 version - Latest release: over 2 years ago - 62 downloads last month - 1 maintainer
illusional.cwlgen 0.0.5 💰
Fork of python-cwlgen | Generation of CWL programmatically. Avaible types: CommandLineTool, Workf...5 versions - Latest release: about 6 years ago - 1 dependent package - 141 downloads last month - 340 stars on GitHub - 1 maintainer
calrissian 0.18.1
CWL runner for Kubernetes21 versions - Latest release: 4 months ago - 1 dependent repositories - 698 downloads last month - 47 stars on GitHub - 4 maintainers
Top 4.1% on pypi.org
1 version - Latest release: almost 9 years ago - 2 dependent packages - 36 dependent repositories - 828 downloads last month - 1,463 stars on GitHub - 2 maintainers
cwlref-runner 1.0 💰
Common workflow language reference implementation1 version - Latest release: almost 9 years ago - 2 dependent packages - 36 dependent repositories - 828 downloads last month - 1,463 stars on GitHub - 2 maintainers
cwltool_service 1.0.1 💰
Common workflow language runner service2 versions - Latest release: over 9 years ago - 2 dependent repositories - 54 downloads last month - 1,463 stars on GitHub - 2 maintainers
cwlgen-kclhi 0.4.0 💰
Generation of CWL programmatically. Available types: Workflow, CommandLineTool and Requirements1 version - Latest release: about 5 years ago - 1 dependent repositories - 68 downloads last month - 1,446 stars on GitHub - 1 maintainer
rabix 0.8.0 💰
Reproducible Analyses for Bioinformatics18 versions - Latest release: over 9 years ago - 3 dependent repositories - 275 downloads last month - 1,446 stars on GitHub - 1 maintainer
cwl_runner 1.0 💰
Common workflow language reference implementation1 version - Latest release: almost 10 years ago - 1 dependent repositories - 935 downloads last month - 1,446 stars on GitHub - 3 maintainers
reana 0.6.1
REANA - Reusable Analyses4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 102 downloads last month - 132 stars on GitHub - 1 maintainer
biowardrobe-cwl-workflows 1.0.20181213214400
Wrapped BioWardrobe's CWL files5 versions - Latest release: over 6 years ago - 1 dependent repositories - 115 downloads last month - 16 stars on GitHub - 1 maintainer
wrabbit 0.3.1
Package that helps convert prepare Nextflow to be run on SevenBridges supported platforms.11 versions - Latest release: about 2 months ago - 396 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.3% on pypi.org
37 versions - Latest release: 2 months ago - 10 dependent packages - 38 dependent repositories - 72.9 thousand downloads last month - 36 stars on GitHub - 3 maintainers
cwl-utils 0.37 💰
Python utilities for CWL37 versions - Latest release: 2 months ago - 10 dependent packages - 38 dependent repositories - 72.9 thousand downloads last month - 36 stars on GitHub - 3 maintainers
Top 9.4% on pypi.org
26 versions - Latest release: 4 months ago - 4 dependent repositories - 741 downloads last month - 8 stars on GitHub - 4 maintainers
sbpack 2024.12.17
Command line tool to upload and download CWL to and from SB powered platforms.26 versions - Latest release: 4 months ago - 4 dependent repositories - 741 downloads last month - 8 stars on GitHub - 4 maintainers
ipython2cwlmosorio 0.0.5
Convert IPython Jupyter Notebooks to CWL tool1 version - Latest release: almost 4 years ago - 1 dependent repositories - 77 downloads last month - 2 stars on GitHub - 1 maintainer
ipython2cwl 0.0.4
Convert IPython Jupyter Notebooks to CWL tool4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 157 downloads last month - 2 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
26 versions - Latest release: 4 months ago - 2 dependent packages - 24 dependent repositories - 64.9 thousand downloads last month - 5 stars on GitHub - 2 maintainers
cwl-upgrader 1.2.12 💰
Upgrade a CWL tool or workflow document from one version to another26 versions - Latest release: 4 months ago - 2 dependent packages - 24 dependent repositories - 64.9 thousand downloads last month - 5 stars on GitHub - 2 maintainers
wdl2cwl 0.2.2
Convertion from WDL workflow descriptions to CWL3 versions - Latest release: about 8 years ago - 1 dependent repositories - 112 downloads last month - 28 stars on GitHub - 1 maintainer
cwlprov 0.1.1 💰
cwlprov API for Python1 version - Latest release: over 6 years ago - 1 dependent package - 2 dependent repositories - 2.29 thousand downloads last month - 3 stars on GitHub - 1 maintainer
Top 8.4% on pypi.org
6 versions - Latest release: about 3 years ago - 3 dependent packages - 10 dependent repositories - 2.82 thousand downloads last month - 9 stars on GitHub - 2 maintainers
cwlformat 2022.2.18
A prettifier for CWL code6 versions - Latest release: about 3 years ago - 3 dependent packages - 10 dependent repositories - 2.82 thousand downloads last month - 9 stars on GitHub - 2 maintainers
Top 9.3% on pypi.org
35 versions - Latest release: over 3 years ago - 3 dependent repositories - 537 downloads last month - 186 stars on GitHub - 1 maintainer
cwl-airflow 1.2.11
Python package to extend Airflow functionality with CWL v1.1 support35 versions - Latest release: over 3 years ago - 3 dependent repositories - 537 downloads last month - 186 stars on GitHub - 1 maintainer
Top 7.5% on pypi.org
62 versions - Latest release: over 1 year ago - 5 dependent packages - 9 dependent repositories - 658 downloads last month - 4 stars on GitHub - 3 maintainers
janis-pipelines.core 0.13.1
Workflow language + translation utilities to convert workflows from one language to another62 versions - Latest release: over 1 year ago - 5 dependent packages - 9 dependent repositories - 658 downloads last month - 4 stars on GitHub - 3 maintainers
toil-msk 3.21.1
Pipeline management software for clusters.2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 92 downloads last month - 874 stars on GitHub - 1 maintainer
cwl-tes 0.3.0
Common workflow language reference implementation backended by a GA4GH Task Execution Service7 versions - Latest release: over 5 years ago - 1 dependent repositories - 194 downloads last month - 18 stars on GitHub - 2 maintainers
benten 2021.1.5
CWL language server developed by Seven Bridges15 versions - Latest release: over 4 years ago - 1 dependent repositories - 272 downloads last month - 67 stars on GitHub - 3 maintainers
arvados-fuse 3.0.0
Arvados FUSE driver508 versions - Latest release: 5 months ago - 17.5 thousand downloads last month - 365 stars on GitHub - 1 maintainer
Related Keywords
workflow
27
common-workflow-language
22
python
17
bioinformatics
16
aws
11
commonwl
11
workflows
10
docker
9
containers
9
wdl
9
sciworkflows
8
workflow-engine
7
ruby
7
arvados
7
science
7
go
7
azure
7
genomics
7
gcp
7
cluster
7
cloud
7
bigdata
7
pipeline
6
galaxy
5
kubernetes
5
workflow-description-language
5
ro-crate
4
pipelines
4
language
4
common
4
bridges
4
seven
4
biohackcovid20
3
jupyter-notebook
3
gridengine
3
mesos
3
slurm
3
nextflow
2
researchobject
2
metadata
2
biohackeu20
2
sevenbridges
2
wdl-workflow
2
cwl-workflow
2
biowardrobe
2
unity-sds
2
ogc
2
packaging
2
tibanna
2
common workflow language
2
jupyter
2
chip-seq
1
bioinformatics-pipeline
1
bioinformatics-analysis
1
atac-seq
1
reusable-science
1
aws-step-function
1
research-data
1
reproducible-workflows
1
reproducible-research
1
cwl-workflows
1
conda
1
snakemake
1
snakemake-workflow
1
language-server
1
ide
1
editor
1
cwl-documents
1
translation
1
janis
1
dag
1
cwl-descriptor
1
cwl-airflow
1
code-formatter
1
research-object
1
bagit
1
provenance
1
cwlprov
1
prov
1
velsera
1
rna-seq
1
epigenetics
1
clip-seq
1
aws-lambda
1
fsharp
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fair-data
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fable-libraries
1
multi platform
1
research data
1
isa
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annotated research context
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arc
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cli
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parser
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sbg
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satellites
1
satellite-imagery
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earth-observation-catalogue
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earth-observation
1
4dn
1