Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "dimensionality-reduction" keyword

Top 4.5% on pypi.org
palantir 1.3.3
Palantir for modeling continuous cell state and cell fate choices in single cell data
11 versions - Latest release: about 1 month ago - 2 dependent packages - 7 dependent repositories - 3.49 thousand downloads last month - 195 stars on GitHub - 3 maintainers
Top 9.5% on pypi.org
xeofs 2.3.2
Comprehensive EOF analysis in Python with xarray: A versatile, multidimensional, and scalable too...
30 versions - Latest release: about 2 months ago - 2 dependent packages - 2 dependent repositories - 1.13 thousand downloads last month - 82 stars on GitHub - 1 maintainer
cluster-shapley 0.1.6
Explaining dimensionality reduction using SHAP values
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 80 downloads last month - 47 stars on GitHub - 1 maintainer
lensed-umap 0.1.1
Untangle UMAP with lenses.
2 versions - Latest release: 2 days ago - 108 downloads last month - 1 stars on GitHub - 1 maintainer
scikit-fda-sim 0.7.1
Functional Data Analysis Python package.
1 version - Latest release: over 1 year ago - 24 downloads last month - 272 stars on GitHub - 1 maintainer
Top 2.7% on pypi.org
scikit-fda 0.9.1
Functional Data Analysis Python package.
15 versions - Latest release: 3 months ago - 9 dependent packages - 14 dependent repositories - 57.4 thousand downloads last month - 272 stars on GitHub - 1 maintainer
Top 0.6% on pypi.org
umap-learn 0.5.6
Uniform Manifold Approximation and Projection
40 versions - Latest release: about 1 month ago - 370 dependent packages - 2,209 dependent repositories - 1.22 million downloads last month - 6,930 stars on GitHub - 3 maintainers
tsnex 0.0.1
Minimal t-distributed stochastic neighbor embedding (t-SNE) implementation in JAX.
1 version - Latest release: 2 months ago - 16 downloads last month - 0 stars on GitHub - 1 maintainer
slisemap 1.6.2
SLISEMAP: Combine local explanations with supervised dimensionality reduction
17 versions - Latest release: 16 days ago - 1 dependent package - 1 dependent repositories - 242 downloads last month - 15 stars on GitHub - 1 maintainer
sliced 0.7.0
Toolbox for sufficient dimension reduction (SDR).
6 versions - Latest release: almost 6 years ago - 1 dependent package - 1 dependent repositories - 5.51 thousand downloads last month - 19 stars on GitHub - 1 maintainer
evomap 0.3.1
A Python Toolbox for Mapping Evolving Relationship Data
2 versions - Latest release: 3 days ago - 178 downloads last month - 88 stars on GitHub - 1 maintainer
diffred 0.1.3
Official Implementation of "DiffRed: Dimensionality Reduction guided by stable rank"
3 versions - Latest release: 2 months ago - 44 downloads last month - 9 stars on GitHub - 1 maintainer
Top 5.1% on pypi.org
pymorton 1.0.5
A lightweight morton coder with lat/long support.
9 versions - Latest release: about 6 years ago - 5 dependent packages - 12 dependent repositories - 5.75 thousand downloads last month - 100 stars on GitHub - 1 maintainer
Top 3.6% on pypi.org
pymde 0.1.18
Minimum-Distortion Embedding
20 versions - Latest release: over 1 year ago - 6 dependent packages - 12 dependent repositories - 8.63 thousand downloads last month - 516 stars on GitHub - 1 maintainer
Top 3.5% on pypi.org
magic-impute 3.0.0
MAGIC
15 versions - Latest release: about 3 years ago - 13 dependent packages - 22 dependent repositories - 2.41 thousand downloads last month - 318 stars on GitHub - 1 maintainer
Top 2.9% on pypi.org
phate 1.0.11
PHATE
36 versions - Latest release: 11 months ago - 18 dependent packages - 33 dependent repositories - 2.73 thousand downloads last month - 443 stars on GitHub - 1 maintainer
Top 2.3% on pypi.org
opentsne 1.0.1
Extensible, parallel implementations of t-SNE
24 versions - Latest release: 6 months ago - 8 dependent packages - 38 dependent repositories - 28.1 thousand downloads last month - 1,361 stars on GitHub - 1 maintainer
Top 2.1% on pypi.org
minisom 2.3.2
Minimalistic implementation of the Self Organizing Maps (SOM)
4 versions - Latest release: 3 months ago - 12 dependent packages - 19 dependent repositories - 22.5 thousand downloads last month - 1,391 stars on GitHub - 1 maintainer
adnmtf 0.1.165
Non-negative Matrix and Tensor Factorization
33 versions - Latest release: 17 days ago - 1 dependent package - 1 dependent repositories - 242 downloads last month - 2 stars on GitHub - 2 maintainers
gbfs 0.2.1
Graph-Based Feature-Selection Algorithms
4 versions - Latest release: 4 days ago - 155 downloads last month - 7 stars on GitHub - 1 maintainer
tsimcne 0.3.12
Visualization tool for unsupervised image visualization (ICLR 2023)
13 versions - Latest release: about 2 months ago - 119 downloads last month - 97 stars on GitHub - 1 maintainer
knockofforigins 0.1.4
This repository is dedicated to implementing the methodologies from the 2015 paper "False Discove...
5 versions - Latest release: 4 days ago - 1.15 thousand downloads last month - 0 stars on GitHub - 1 maintainer
multi-mst 0.1.2
Minimum spanning tree based manifold approximations.
3 versions - Latest release: about 1 month ago - 242 downloads last month - 1 stars on GitHub - 1 maintainer
cat-scaling 2024.3.1b0
Build Catalysts Adsorption Energy Scaling Relations
2 versions - Latest release: 2 months ago - 20 downloads last month - 0 stars on GitHub - 1 maintainer
torchdr 0
Torch Dimensionality Reduction Library
1 version - Latest release: 3 months ago - 13 downloads last month - 2 stars on GitHub - 1 maintainer
nimble-raccoon 0.1.1
A slim and fast implementation of the RACCOON clustering library.
2 versions - Latest release: 5 months ago - 19 downloads last month - 1 maintainer
msmbuilder2022 3.8.6
MSMBuilder: Statistical models for Biomolecular Dynamics
2 versions - Latest release: 7 months ago - 13 downloads last month - 151 stars on GitHub - 1 maintainer
ccsf 1.0.8
Leveraging cell-cell similarity from gene expression data for high-performance spatial and tempor...
6 versions - Latest release: 9 months ago - 54 downloads last month - 0 stars on GitHub - 1 maintainer
interpretable-tsne 0.0.3
Implementation of the gradient-based t-SNE sttribution method described in our GLBIO oral present...
3 versions - Latest release: 24 days ago - 143 downloads last month - 0 stars on GitHub - 1 maintainer
pcax 0.1.0
Minimal Principal Component Analysis (PCA) implementation using JAX.
1 version - Latest release: 12 months ago - 48 downloads last month - 8 stars on GitHub - 1 maintainer
mafese 0.1.9
MAFESE: Metaheuristic Algorithm for Feature Selection - An Open Source Python Library
10 versions - Latest release: 9 months ago - 242 downloads last month - 44 stars on GitHub - 1 maintainer
zadu 0.1.1
A Python Toolkit for Evaluating the Reliability of Dimensionality Reduction Embeddings
9 versions - Latest release: 7 months ago - 111 downloads last month - 24 stars on GitHub - 1 maintainer
tphate 0.0.5
Temporal PHATE (TPHATE) is a python package for learning robust manifold representations of times...
4 versions - Latest release: about 1 year ago - 1 dependent repositories - 21 downloads last month - 18 stars on GitHub - 1 maintainer
raccoon-cluster 0.5.1
Scale-adaptive clustering in Python
1 version - Latest release: almost 2 years ago - 23 downloads last month - 3 stars on GitHub - 1 maintainer
sortedness 2.231107.1
Measures of projection quality
16 versions - Latest release: 6 months ago - 1 dependent repositories - 151 downloads last month - 2 stars on GitHub - 1 maintainer
umato 0.1.2
Python Implementation of UMATO (Uniform Manifold Approximation with Two-Phase Optimization)
7 versions - Latest release: about 1 year ago - 1 dependent repositories - 84 downloads last month - 104 stars on GitHub - 1 maintainer
ttra 0.1.1
Implementation of Time-proof Time-series Reduction Algorithm
7 versions - Latest release: almost 2 years ago - 15 downloads last month - 1 stars on GitHub - 1 maintainer
snc 0.2.1
Implementation of Steadiness & Cohesiveness
8 versions - Latest release: about 1 year ago - 1 dependent package - 24 downloads last month - 21 stars on GitHub - 1 maintainer
topometry 0.0.4
A comprehensive dimensional reduction framework to recover latent information from data.
26 versions - Latest release: over 2 years ago - 3 dependent repositories - 184 downloads last month - 87 stars on GitHub - 1 maintainer
timecorr 0.1.7
Compute dynamic correlations, dynamic higher-order correlations, and dynamic graph theoretic meas...
6 versions - Latest release: 5 months ago - 1 dependent repositories - 56 downloads last month - 38 stars on GitHub - 1 maintainer
stad 2.0.1
Dimensionality reduction through Simplified Topological Abstraction of Data
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 21 downloads last month - 4 stars on GitHub - 1 maintainer
Top 10.0% on pypi.org
simpsom 2.0.2
Simple Self-Organizing Maps in Python
12 versions - Latest release: over 1 year ago - 1 dependent repositories - 523 downloads last month - 153 stars on GitHub - 1 maintainer
pymds 0.1.6
Metric multidimensional scaling in python.
7 versions - Latest release: almost 6 years ago - 1 dependent repositories - 49 downloads last month - 4 stars on GitHub - 1 maintainer
pre-ml 1.0.1
pre-ml an optimization tool for machine learning!
1 version - Latest release: over 6 years ago - 1 dependent repositories - 13 downloads last month - 4 stars on GitHub - 1 maintainer
nystrompca 1.0.2
Kernel PCA with the NystrΓΆm method
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 37 downloads last month - 11 stars on GitHub - 1 maintainer
neural-map 1.0.0
NeuralMap is a data analysis tool based on Self-Organizing Maps
8 versions - Latest release: over 3 years ago - 1 dependent repositories - 29 downloads last month - 8 stars on GitHub - 1 maintainer
ncvis 1.5.13
Noise contrastive data visualization
23 versions - Latest release: 6 months ago - 1 dependent repositories - 75 downloads last month - 51 stars on GitHub - 1 maintainer
mycorrhiza 0.0.28
Mycorrhiza population assignment tools.
25 versions - Latest release: almost 5 years ago - 1 dependent repositories - 196 downloads last month - 5 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
msmbuilder 3.8.0
MSMBuilder: Statistical models for Biomolecular Dynamics
15 versions - Latest release: about 7 years ago - 9 dependent repositories - 173 downloads last month - 151 stars on GitHub - 4 maintainers
metrics4mdp 0.1.2
Quantitative metrics of Multidimensional Projections (MDP) in Python
3 versions - Latest release: about 3 years ago - 1 dependent repositories - 13 downloads last month - 25 stars on GitHub - 1 maintainer
humap 0.2.8
Hierarchical Uniform Manifold Approximation and Projection
12 versions - Latest release: 11 months ago - 1 dependent repositories - 56 downloads last month - 209 stars on GitHub - 1 maintainer
flameplot 1.1.0 πŸ’°
flameplot is a python package for the quantification of local similarity across two maps or embed...
7 versions - Latest release: over 1 year ago - 1 dependent repositories - 101 downloads last month - 8 stars on GitHub - 1 maintainer
fastlapmap 0.1.2
Fast Laplacian Eigenmaps for dimensionality reduction.
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 33 downloads last month - 21 stars on GitHub - 1 maintainer
ezancestry 0.1.0
Easily predict and visualize genetic ancestry. Evaluate custom ancestry-informative SNP sets.
8 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 172 downloads last month - 56 stars on GitHub - 1 maintainer
enstop 0.2.6
Ensemble topic modelling with pLSA
14 versions - Latest release: over 2 years ago - 3 dependent repositories - 46 downloads last month - 109 stars on GitHub - 3 maintainers
encodermap 2.0.1
python library for dimensionality reduction
12 versions - Latest release: over 4 years ago - 1 dependent repositories - 85 downloads last month - 26 stars on GitHub - 1 maintainer
easyae-samuel.revolinski 0.0.0
easy way for non-linear dimensionality increase or reduction
1 version - Latest release: about 5 years ago - 16 downloads last month - 0 stars on GitHub - 1 maintainer
easyae 0.0.0
easy way for non-linear dimensionality increase or reduction
1 version - Latest release: about 5 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 1 maintainer
drfr 0.9.6
A Small Package for Use of Research
12 versions - Latest release: about 4 years ago - 1 dependent repositories - 30 downloads last month - 6,930 stars on GitHub - 1 maintainer
dpca 1.0.5
Implements Demixed Principal Components Analysis
3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 62 downloads last month - 262 stars on GitHub - 1 maintainer
dimdrop 0.1.0
Providing some dimensionality reduction methods using Machine Learning
1 version - Latest release: almost 5 years ago - 1 dependent repositories - 8 downloads last month - 1 stars on GitHub - 1 maintainer
dbmap 1.2.0
dbMAP: diffusion metrics, graphs and layouts for machine-learning
8 versions - Latest release: about 3 years ago - 1 dependent package - 1 dependent repositories - 100 downloads last month - 44 stars on GitHub - 1 maintainer
cne-learn 0.0.dev0
Contrastive neighbor embeddings (CNE) for dimensionality reduction and clustering
1 version - Latest release: over 2 years ago - 13 downloads last month - 151 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
chemplot 1.2.1
A python library for chemical space visualization.
9 versions - Latest release: over 1 year ago - 2 dependent repositories - 419 downloads last month - 95 stars on GitHub - 1 maintainer
celltometry 0.0.1
Learn single-cell data structure through topological bases, graphs and layouts
1 version - Latest release: about 2 years ago - 24 downloads last month - 1 stars on GitHub - 1 maintainer
ppca-rs 0.5.1
Python+Rust implementation of the Probabilistic Principal Component Analysis model
11 versions - Latest release: 12 months ago - 285 downloads last month - 34 stars on GitHub - 1 maintainer
augmented-pca 0.2.0
Python implementations of supervised and adversarial linear factor models.
1 version - Latest release: over 2 years ago - 1 dependent repositories - 22 downloads last month - 10 stars on GitHub - 1 maintainer
mica 0.2.2
Mutual Information-based Clustering Analysis tool designed for scRNA-seq data
2 versions - Latest release: almost 2 years ago - 1 dependent repositories - 11 downloads last month - 1 stars on GitHub - 1 maintainer
pyldle2 0.1.21
Low Distortion Local Eigenmaps and its variations.
29 versions - Latest release: 9 months ago - 230 downloads last month - 10 stars on GitHub - 1 maintainer
pysef 0.2.10
Package that implements the Similarity Embedding Framework on top of the PyTorch library.
11 versions - Latest release: over 5 years ago - 1 dependent repositories - 77 downloads last month - 25 stars on GitHub - 1 maintainer
heatgeo 0.0.1
Heat geodesic embeddings
1 version - Latest release: 11 months ago - 45 downloads last month - 6 stars on GitHub - 1 maintainer
multiscale-phate 0.0
multiscale_phate
1 version - Latest release: over 3 years ago - 1 dependent repositories - 27 downloads last month - 43 stars on GitHub - 1 maintainer
selfsne 0.0.1
Self-Supervised Noise Embeddings (Self-SNE) for dimensionality reduction and clustering
2 versions - Latest release: about 2 years ago - 1 dependent repositories - 11 downloads last month - 151 stars on GitHub - 1 maintainer
dimae 0.1.4
Dimensionality Autoencoder
2 versions - Latest release: over 3 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 1 maintainer
fabba 1.2.1
An efficient aggregation method for the symbolic representation of temporal data
115 versions - Latest release: 3 months ago - 1 dependent repositories - 406 downloads last month - 27 stars on GitHub - 1 maintainer
dimensionality-reduction-package 1.0.0
Python package for plug and play dimensionality reduction techniques and data visualization in 2D...
1 version - Latest release: over 1 year ago - 10 downloads last month - 3 stars on GitHub - 1 maintainer
drcomp 0.0.1a0
Dimensionality Reduction Comparison
1 version - Latest release: over 1 year ago - 14 downloads last month - 1 stars on GitHub - 1 maintainer
adenine 0.1.4
A Data ExploratioN pIpeliNE
6 versions - Latest release: about 7 years ago - 2 dependent repositories - 38 downloads last month - 15 stars on GitHub - 1 maintainer
pmpca 0.1.2
PCA for multivariate statistical process monitoring.
3 versions - Latest release: over 1 year ago - 33 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
ivis 2.0.9
Artificial neural network-driven visualization of high-dimensional data using triplets.
31 versions - Latest release: over 1 year ago - 1 dependent package - 7 dependent repositories - 895 downloads last month - 315 stars on GitHub - 1 maintainer
testmsm 3.8.5
MSMBuilder: Statistical models for Biomolecular Dynamics
6 versions - Latest release: about 2 years ago - 1 dependent repositories - 6 downloads last month - 151 stars on GitHub - 1 maintainer
scbean 0.5.6
integration
15 versions - Latest release: 4 months ago - 2 dependent repositories - 157 downloads last month - 14 stars on GitHub - 1 maintainer
aroughcun 0.5.1 removed
Scale-adaptive clustering in Python
1 version - Latest release: almost 2 years ago - 0 stars on GitHub
bsoid 0.1.3 removed
An open-source machine learning algorithm for parsing spatio-temporal patterns.
1 version - Latest release: almost 4 years ago - 1 dependent repositories - 19 downloads last month - 158 stars on GitHub - 1 maintainer
Related Keywords
machine-learning 37 visualization 21 python 21 clustering 18 pca 11 umap 9 manifold-learning 9 data-visualization 9 unsupervised-learning 8 embedding 7 autoencoder 6 data-science 6 single-cell 5 machine-learning-algorithms 5 molecular-dynamics 4 reduction 4 machine learning 4 dimension-reduction 4 optimization 4 autoencoders 4 feature-extraction 4 big-data 4 analysis 4 computational-biology 4 tica 3 feature-selection 3 t-sne 3 msmbuilder 3 topological-data-analysis 3 dimensionality 3 tsne 3 hierarchical-clustering 3 pytorch 3 multi-scale 3 scale-adaptive 3 hmm 3 metrics 3 markov-model 3 keras 3 self-organizing-map 3 genomics 3 genetics 3 principal-component-analysis 3 gwas 3 classification 3 python3 3 dimensionality reduction 3 embedding-models 2 som 2 self-supervised-learning 2 pca-analysis 2 missing-data 2 graph-embedding 2 auto-encoder 2 neural-network 2 nearest-neighbors 2 denoising 2 contrastive-learning 2 principal component analysis 2 high-dimensional 2 ancestry 2 deep-learning 2 single-cell-rna-seq 2 auto-encoders 2 curves 2 alignment 2 single-cell-analysis 2 time-series 2 explainable-ai 2 unsupervised-machine-learning 2 unsupervised-clustering 2 unsupervised 2 spectral-clustering 2 graph-layout 2 mds 2 single-cell-genomics 2 spectral-analysis 2 scikit-learn 2 population-structure 2 nonlinear 2 nir 2 mutual-information 2 multidimensional-projection 2 ml 2 differential-evolution 2 knn 2 gpu 2 optimal-clusters 2 jax 2 data-analysis 2 statistics 2 smoothing 2 scikits 2 regression 2 registration 2 functions 2 functional-data-analysis 2 topic 1 tensorflow 1 model 1