Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "dna" keyword

dnacurve 2024.5.10
DNA curvature analysis
11 versions - Latest release: 1 day ago - 1 dependent repositories - 135 downloads last month - 5 stars on GitHub - 2 maintainers
nmm 0.0.14
Hidden Markov models for nucleotide sequences
12 versions - Latest release: almost 4 years ago - 1 dependent repositories - 226 downloads last month - 0 stars on GitHub - 2 maintainers
usum 0.1.6
USUM: Plotting sequence similarity using USEARCH & UMAP
6 versions - Latest release: about 4 years ago - 1 dependent repositories - 87 downloads last month - 10 stars on GitHub - 2 maintainers
dna-analyser-ibp 3.6.0
DNA analyser API wrapper tool for Jupiter notebooks.
33 versions - Latest release: 8 months ago - 1 dependent repositories - 287 downloads last month - 1 stars on GitHub - 2 maintainers
Top 1.9% on pypi.org
pyfaidx 0.8.1
pyfaidx: efficient pythonic random access to fasta subsequences
88 versions - Latest release: 4 months ago - 57 dependent packages - 268 dependent repositories - 111 thousand downloads last month - 440 stars on GitHub - 1 maintainer
dnamd 2.1.0
To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories
13 versions - Latest release: over 5 years ago - 1 dependent repositories - 120 downloads last month - 17 stars on GitHub - 2 maintainers
file2dna 0.4
A script to encode/decode arbitrary computer files into DNA sequences.
4 versions - Latest release: about 9 years ago - 2 dependent repositories - 27 downloads last month - 44 stars on GitHub - 1 maintainer
mutalyzer-mutator 0.2.0
Mutalyzer sequence mutator.
5 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 115 downloads last month - 0 stars on GitHub - 2 maintainers
rnaseeker 1.0.0
RNA-seq scripts and libraries
1 version - Latest release: 3 months ago - 20 downloads last month - 1 stars on GitHub - 2 maintainers
dasi 0.2.1
Automated DNA assembly planner for Python
19 versions - Latest release: about 3 years ago - 2 dependent repositories - 204 downloads last month - 10 stars on GitHub - 2 maintainers
openoligo 0.1.7
An open-source platform for programmatically interacting with and managing Nucleic acid sequences...
8 versions - Latest release: 10 months ago - 54 downloads last month - 1 stars on GitHub - 2 maintainers
Top 5.7% on pypi.org
google-nucleus 0.6.0
A library for reading and writing genomics data.
19 versions - Latest release: over 2 years ago - 1 dependent package - 34 dependent repositories - 192 downloads last month - 776 stars on GitHub - 3 maintainers
prbdes 0.1.2
Probe design originails for FISH by Quentin Verron
3 versions - Latest release: 3 days ago - 249 downloads last month - 2 stars on GitHub - 2 maintainers
Top 3.3% on pypi.org
pydna 5.2.0
Representing double stranded DNA and functions for simulating cloning and homologous recombinatio...
112 versions - Latest release: over 1 year ago - 5 dependent packages - 15 dependent repositories - 7.39 thousand downloads last month - 155 stars on GitHub - 2 maintainers
Top 0.6% on pypi.org
biopython 1.83
Freely available tools for computational molecular biology.
60 versions - Latest release: 4 months ago - 637 dependent packages - 3,405 dependent repositories - 832 thousand downloads last month - 3,908 stars on GitHub - 5 maintainers
mah51-biopython 1.1
Freely available tools for computational molecular biology.
2 versions - Latest release: about 2 years ago - 1 dependent repositories - 28 downloads last month - 3,900 stars on GitHub - 1 maintainer
flounder-score 1.2.0
Flounder score library.
1 version - Latest release: over 2 years ago - 1 dependent repositories - 9 downloads last month - 1 stars on GitHub - 2 maintainers
galaxy-test-api 24.0.2
Galaxy API tests
18 versions - Latest release: 4 days ago - 1 dependent repositories - 186 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-tours 24.0.2
Galaxy tours backend framework
15 versions - Latest release: 4 days ago - 1 dependent package - 362 downloads last month - 1,315 stars on GitHub - 2 maintainers
Top 5.1% on pypi.org
galaxy-web-stack 24.0.2
Galaxy web stack abstraction
18 versions - Latest release: 4 days ago - 3 dependent packages - 10 dependent repositories - 437 downloads last month - 1,315 stars on GitHub - 6 maintainers
Top 5.1% on pypi.org
galaxy-web-framework 24.0.2
Galaxy web framework
19 versions - Latest release: 4 days ago - 4 dependent packages - 10 dependent repositories - 423 downloads last month - 1,315 stars on GitHub - 6 maintainers
Top 4.9% on pypi.org
galaxy-data 24.0.2
Galaxy datatype framework and datatypes
24 versions - Latest release: 4 days ago - 8 dependent packages - 13 dependent repositories - 782 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-selenium 24.0.2
Galaxy Selenium interaction framework
19 versions - Latest release: 4 days ago - 1 dependent repositories - 222 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-apps 24.0.2
Galaxy web apps
15 versions - Latest release: 4 days ago - 1 dependent package - 1 dependent repositories - 233 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.1% on pypi.org
galaxy-job-execution 24.0.2
Galaxy job execution runtime utilities
20 versions - Latest release: 4 days ago - 5 dependent packages - 10 dependent repositories - 430 downloads last month - 1,315 stars on GitHub - 6 maintainers
Top 3.6% on pypi.org
galaxy-objectstore 24.0.2
Galaxy objectstore framework and plugins
25 versions - Latest release: 4 days ago - 5 dependent packages - 13 dependent repositories - 824 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 3.8% on pypi.org
galaxy-job-metrics 24.0.2
Galaxy job metrics
22 versions - Latest release: 4 days ago - 3 dependent packages - 10 dependent repositories - 665 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 5.4% on pypi.org
galaxy-files 24.0.2
Galaxy file source framework and default plugins
16 versions - Latest release: 4 days ago - 4 dependent packages - 6 dependent repositories - 499 downloads last month - 1,315 stars on GitHub - 6 maintainers
Top 6.1% on pypi.org
galaxy-config 24.0.2
Galaxy configuration
16 versions - Latest release: 4 days ago - 3 dependent packages - 3 dependent repositories - 393 downloads last month - 1,315 stars on GitHub - 5 maintainers
Top 5.2% on pypi.org
galaxy-auth 24.0.2
Galaxy auth framework and implementations
19 versions - Latest release: 4 days ago - 2 dependent packages - 10 dependent repositories - 396 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 6.1% on pypi.org
galaxy-test-base 24.0.2
Galaxy testing utilities
18 versions - Latest release: 4 days ago - 2 dependent packages - 9 dependent repositories - 272 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-driver 24.0.2
Galaxy test driver
18 versions - Latest release: 4 days ago - 1 dependent package - 1 dependent repositories - 185 downloads last month - 1,315 stars on GitHub - 6 maintainers
galaxy-navigation 24.0.2
Galaxy client DOM navigation framework
15 versions - Latest release: 4 days ago - 2 dependent packages - 417 downloads last month - 1,315 stars on GitHub - 2 maintainers
Top 1.6% on pypi.org
galaxy-tool-util 24.0.2
Galaxy tool and tool dependency utilities
60 versions - Latest release: 4 days ago - 15 dependent packages - 43 dependent repositories - 17.9 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 1.9% on pypi.org
galaxy-util 24.0.2
Galaxy generic utilities
36 versions - Latest release: 4 days ago - 21 dependent packages - 23 dependent repositories - 16.7 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-tool-shed 24.0.2
Galaxy auth framework and implementations
4 versions - Latest release: 4 days ago - 102 downloads last month - 1,315 stars on GitHub - 2 maintainers
galaxy-schema 24.0.2
Galaxy auth framework and implementations
4 versions - Latest release: 4 days ago - 111 downloads last month - 1,315 stars on GitHub - 2 maintainers
Top 4.4% on pypi.org
galaxy-app 24.0.2
Galaxy application (backend)
19 versions - Latest release: 4 days ago - 4 dependent packages - 13 dependent repositories - 450 downloads last month - 1,315 stars on GitHub - 3 maintainers
bingenetic 2.1
convert binary data (in digital form) to genetic codes and further genetic codes back to binary data
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 20 downloads last month - 1 stars on GitHub - 2 maintainers
Top 6.7% on pypi.org
snps 2.8.1
tools for reading, writing, merging, and remapping SNPs
44 versions - Latest release: 7 days ago - 1 dependent package - 6 dependent repositories - 3.08 thousand downloads last month - 91 stars on GitHub - 1 maintainer
eltetrado 1.5.16
Find and classify tetrads and quadruplexes in DNA/RNA 3D structure
38 versions - Latest release: 6 months ago - 1 dependent repositories - 332 downloads last month - 17 stars on GitHub - 1 maintainer
component-segmentation 1.0.1
Segmenting syntenic blocks of shared sequence.
2 versions - Latest release: over 3 years ago - 20 downloads last month - 3 stars on GitHub - 1 maintainer
haplodynamics 0.4b1
A python library to develop genomic data simulators
16 versions - Latest release: 9 months ago - 34 downloads last month - 2 stars on GitHub - 1 maintainer
adapt-diagnostics 1.6.0
Tools to design guides for diagnostics
6 versions - Latest release: about 1 year ago - 1 dependent repositories - 103 downloads last month - 24 stars on GitHub - 2 maintainers
open3spn2 0.3.2
An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
7 versions - Latest release: 7 months ago - 1 dependent repositories - 44 downloads last month - 17 stars on GitHub - 2 maintainers
primer3plus 1.0.8
An easy-to-use Python API for Primer3 primer design.
12 versions - Latest release: over 4 years ago - 3 dependent repositories - 112 downloads last month - 11 stars on GitHub - 2 maintainers
aqbt 0.0.2
Aquarium strain builder tools
2 versions - Latest release: about 3 years ago - 1 dependent repositories - 34 downloads last month - 11 stars on GitHub - 1 maintainer
lightdock 0.9.4 💰
A macromolecular docking framework
20 versions - Latest release: 9 months ago - 1 dependent repositories - 527 downloads last month - 259 stars on GitHub - 2 maintainers
biokevlar 0.6.1
Reference-free variant discovery scalable to large eukaryotic genomes
10 versions - Latest release: over 5 years ago - 38 downloads last month - 40 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
lineage 4.4.0
tools for genetic genealogy and the analysis of consumer DNA test results
31 versions - Latest release: about 2 months ago - 4 dependent repositories - 1.91 thousand downloads last month - 139 stars on GitHub - 1 maintainer
dna-parser 0.2.1
A Python module written in rust to encode DNA sequences for machine learning
3 versions - Latest release: 12 months ago - 285 downloads last month - 1 stars on GitHub - 2 maintainers
kman 0.0.1
K-mer management tools
1 version - Latest release: about 6 years ago - 1 dependent repositories - 4 downloads last month - 0 stars on GitHub - 2 maintainers
simulatesv 0.2.0
Simulate structural variations and SNPs with artificial dna sequences
4 versions - Latest release: almost 7 years ago - 1 dependent repositories - 12 downloads last month - 1 stars on GitHub - 1 maintainer
hladownload 0.0.5
Python command line program and module for retrieving HLA alleles, frequencies and eplets.
7 versions - Latest release: over 2 years ago - 1 dependent repositories - 19 downloads last month - 3 stars on GitHub - 1 maintainer
kspider2 2.0.1
kSpider Python interface
2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 45 downloads last month - 7 stars on GitHub - 2 maintainers
bpforms 0.0.16
Unambiguous representation of modified DNA, RNA, and proteins
12 versions - Latest release: almost 4 years ago - 7 dependent repositories - 116 downloads last month - 6 stars on GitHub - 4 maintainers
dna-processing 0.0.3
dna_processing: Module to work with DNA, RNA and Protein sequences. And interact with them.
3 versions - Latest release: about 2 years ago - 1 dependent repositories - 26 downloads last month - 0 stars on GitHub - 1 maintainer
hunana 1.0.7
HUNANA
8 versions - Latest release: about 3 years ago - 1 dependent repositories - 64 downloads last month - 6 stars on GitHub - 4 maintainers
streamlit-seqviz 0.0.5
This library is a streamlit app for chemical or medical use that show DNA sequences effectively
5 versions - Latest release: 12 months ago - 16 downloads last month - 0 stars on GitLab.com - 2 maintainers
broad-genepy 1.2.6 💰
A useful module for any CompBio
11 versions - Latest release: over 1 year ago - 53 downloads last month - 18 stars on GitHub - 2 maintainers
geneant 0.1.0
align dna.
1 version - Latest release: about 4 years ago - 1 dependent repositories - 35 downloads last month - 2 maintainers
methylprep 1.7.1 💰
Python-based Illumina methylation array preprocessing software
54 versions - Latest release: almost 2 years ago - 2 dependent repositories - 902 downloads last month - 32 stars on GitHub - 1 maintainer
kspider 2.3.2
A simple yet powerful sequence clustering tool
10 versions - Latest release: over 1 year ago - 1 dependent repositories - 210 downloads last month - 7 stars on GitHub - 1 maintainer
methylize 1.1.1 💰
EWAS Analysis software for Illumina methylation arrays
12 versions - Latest release: almost 2 years ago - 1 dependent repositories - 220 downloads last month - 12 stars on GitHub - 2 maintainers
dnacol 0.3.2
Display FASTA/FASTQ/SAM/VCF files with colored DNA/RNA bases and quality scores (`dnacol`) or a p...
3 versions - Latest release: almost 7 years ago - 1 dependent repositories - 12 downloads last month - 19 stars on GitHub - 2 maintainers
fish-prode 1.1.0
A FISH probe design web interface.
3 versions - Latest release: over 5 years ago - 1 dependent repositories - 51 downloads last month - 8 stars on GitHub - 2 maintainers
Top 3.6% on pypi.org
pyfastx 2.1.0
pyfastx is a python module for fast random access to sequences from plain and gzipped FASTA/Q file
67 versions - Latest release: 2 months ago - 12 dependent packages - 28 dependent repositories - 16.7 thousand downloads last month - 235 stars on GitHub - 1 maintainer
fractaldna 0.6.1
FractalDNA is a Python package built to generate DNA geometries for simulations
9 versions - Latest release: about 1 year ago - 1 dependent repositories - 76 downloads last month - 9 stars on GitHub - 2 maintainers
varify 0.8.0
Clinical DNA Sequencing Analysis and Data Discovery
7 versions - Latest release: over 9 years ago - 2 dependent repositories - 74 downloads last month - 24 stars on GitHub - 2 maintainers
plasmid-assessor 0.1.0
Plasmid assessment for Golden Gate cloning
1 version - Latest release: over 2 years ago - 1 dependent repositories - 22 downloads last month - 2 maintainers
overhang 0.1.6
Compendium of overhangs
3 versions - Latest release: almost 2 years ago - 1 dependent repositories - 42 downloads last month - 2 maintainers
rcgrep 0.1.0
Search text files for DNA sequences and their reverse complements
3 versions - Latest release: about 7 years ago - 1 dependent repositories - 17 downloads last month - 6 stars on GitHub - 2 maintainers
arv 0.9.2
A fast 23andMe raw genome file parser
11 versions - Latest release: about 7 years ago - 221 downloads last month - 114 stars on GitHub - 1 maintainer
seqtables 0.11
Package for efficient analysis of next generation sequencing amplicon data using numpy and datafr...
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 12 downloads last month - 5 stars on GitHub - 2 maintainers
ypkpathway 3.0.1
Simulation and documentation of metabolic pathway assemblies using the Yeast Pathway Kit.
25 versions - Latest release: almost 5 years ago - 2 dependent repositories - 227 downloads last month - 2 stars on GitHub - 1 maintainer
Top 9.8% on pypi.org
benchlingapi 2.1.12
An unofficial python wrapper for the Benchling API
17 versions - Latest release: about 4 years ago - 2 dependent packages - 2 dependent repositories - 180 downloads last month - 49 stars on GitHub - 1 maintainer
methpype 1.0.6 💰
Python-based Illumina methylation array processing and analysis software composite package
6 versions - Latest release: over 3 years ago - 1 dependent repositories - 65 downloads last month - 32 stars on GitHub - 1 maintainer
orfipy 0.0.4
orfipy
4 versions - Latest release: almost 3 years ago - 1 dependent repositories - 261 downloads last month - 44 stars on GitHub - 2 maintainers
coral 0.5.0
Coral: code-ify your synthetic DNA design workflow.
12 versions - Latest release: about 8 years ago - 3 dependent repositories - 143 downloads last month - 33 stars on GitHub - 2 maintainers
streq 0.0.2
Basic utilities for working with nucleotide sequence strings.
2 versions - Latest release: 11 months ago - 2 dependent packages - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 2 maintainers
ifpd 2.1.1
An iFISH probe design pipeline, with web interface included.
21 versions - Latest release: over 2 years ago - 1 dependent repositories - 82 downloads last month - 8 stars on GitHub - 2 maintainers
buddysuite 1.4.0
BuddySuite is a collection of command line utilities written in Python for working with biologica...
14 versions - Latest release: over 2 years ago - 1 dependent repositories - 83 downloads last month - 121 stars on GitHub - 1 maintainer
stirplate 1.4.0
Stirplate Data Uploader
5 versions - Latest release: over 7 years ago - 2 dependent repositories - 18 downloads last month - 0 stars on GitHub - 2 maintainers
optipyzer 0.4.1
Codon optimize DNA and Protein sequences for multiple species.
8 versions - Latest release: over 1 year ago - 1 dependent repositories - 82 downloads last month - 22 stars on GitHub - 1 maintainer
ifpd2 1.0.1a1
An iFISH probe design pipeline (II)
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 16 downloads last month - 2 stars on GitHub - 1 maintainer
jasper-vh 1.0.3
Just a simple virus's hosts predictor
6 versions - Latest release: over 3 years ago - 1 dependent repositories - 39 downloads last month - 4 stars on GitHub - 2 maintainers
polyply 1.7.0
Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymer...
13 versions - Latest release: 14 days ago - 1 dependent repositories - 147 downloads last month - 109 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
galaxy-containers 22.1.1
Galaxy Container Modeling and Interaction Abstractions
6 versions - Latest release: over 1 year ago - 4 dependent packages - 13 dependent repositories - 2.96 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
fluentdna 2.5.3
Visualization tool for bare fasta files. Supports whole genome alignment and multiple sequence a...
3 versions - Latest release: over 4 years ago - 1 dependent repositories - 27 downloads last month - 59 stars on GitHub - 2 maintainers
dima-cli 4.1.3
A command-line tool that analyses the diversity and motifs of biological sequences
48 versions - Latest release: over 1 year ago - 1 dependent repositories - 1.52 thousand downloads last month - 0 stars on GitHub - 2 maintainers
pycontact 1.0.4
PyContact
2 versions - Latest release: over 3 years ago - 1 dependent repositories - 43 downloads last month - 42 stars on GitHub - 2 maintainers
galaxy-authnz 19.9.0.dev0
Galaxy AuthNZ
1 version - Latest release: over 2 years ago - 1 dependent repositories - 23 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-selenium 22.1.1
Galaxy Selenium Tests
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 30 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-tools 19.9.0.dev2
Galaxy Test Tools`
1 version - Latest release: over 2 years ago - 1 dependent repositories - 13 downloads last month - 1,315 stars on GitHub - 5 maintainers
galaxy-model-tools 19.9.0.dev2
Galaxy Model Tools`
1 version - Latest release: over 2 years ago - 1 dependent repositories - 9 downloads last month - 1,315 stars on GitHub - 3 maintainers
moose-classifier 0.9
Alignment based taxonomic classifier
4 versions - Latest release: over 2 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 1 maintainer
dnaskittleutils 1.0.13
Bioinformatics functions that have been useful in multiple projects. Manipulating FASTA files, e...
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 37 downloads last month - 0 stars on GitHub - 2 maintainers
primers 0.5.10
Create PCR primers with optimal lengths, tms, gc%s and free energies
28 versions - Latest release: 17 days ago - 2 dependent repositories - 696 downloads last month - 22 stars on GitHub - 3 maintainers
swv-anypeakfinder 1.9.0
GUI application for resolving peak heights in square-wave voltammetry datafiles.
7 versions - Latest release: over 1 year ago - 1 dependent repositories - 39 downloads last month - 6 stars on GitHub - 2 maintainers
methylsuite 1.4.0 💰
Python-based Illumina methylation array processing and analysis software composite package
6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 102 downloads last month - 31 stars on GitHub - 2 maintainers
Related Keywords
bioinformatics 66 genomics 39 sequencing 33 hacktoberfest 32 python 30 science 30 ngs 28 workflow 27 workflow-engine 26 usegalaxy 26 pipeline 26 Galaxy 21 protein 21 biology 18 rna 15 DNA 11 sequence 10 genetics 9 genome 7 fasta 7 molecular-biology 7 oligonucleotide 6 methylation 6 illumina 6 epigenetics 6 data 6 galaxy 5 alignment 5 processing 5 blast 5 RNA 5 fish 4 biopython 4 fluorescence 4 ifish-probe 4 synthetic-biology 4 simulation 4 dna-sequences 4 search 4 python3 4 design 3 bioinformatics-tool 3 hybridization 3 FISH 3 snps 3 cell 3 virus 3 visualization 3 vcf 3 chemistry 3 phylogenetics 3 protein-structure 3 sanger 2 pandas 2 gibson-assembly 2 rna-seq 2 dynamics 2 primers 2 biochemistry 2 data-science 2 allele-frequencies 2 dna-assembly 2 sequence-alignment 2 command-line 2 hmm 2 profile 2 overhang 2 assembly 2 web-interface 2 probe 2 ifish 2 gui 2 proteomics 2 inverted-repeats 2 palindrome 2 terminal 2 clustering 2 encoding 2 molecular-structures 2 probe-design 2 fish-probe 2 analysis 2 chromosomes 2 rust 2 biocad 2 biodesign 2 gene 2 bio 2 fastq 2 rnaseq 2 embeddings 2 fast 2 skipmers 2 react 1 gbs 1 optimization 1 codon 1 upload 1 ngs-analysis 1 species diversity 1