bioinformatics 43 biology 26 phylogenetics 26 genomics 24 python 24 simulation 21 phylogeny 16 optimization 14 evolutionary-algorithms 11 statistics 10 genetic 10 evolutionary 10 machine-learning 8 learning 8 science 7 evolutionary-biology 7 genetics 7 deep-learning 7 ecology 7 algorithms 7 artificial-intelligence 7 machine 7 game theory 6 protein 6 norms 6 phylogenomics 6 genetic algorithm 6 evolutionary-computation 6 agent-based-modeling 6 reinforcement-learning 6 ai 6 evolutionary game 5 evolutionary algorithms 5 genetic-algorithms 5 social norms 5 development 5 algorithm 5 comparative-genomics 5 artificial intelligence 5 deep learning 5 gametheory 5 pytorch 5 reinforcement learning 4 neuroevolution 4 computational-biology 4 orthology-inference 4 single-cell 4 multi-agents 4 genetic-algorithm 4 evolutionarygame 4 fast 4 systematics 4 population 4 agent-based-simulation 4 pypi-package 4 easy 4 coalescent 3 generator 3 genetic programming 3 migration 3 single cell 3 schema 3 database 3 orthology 3 quantum 3 landscape 3 social-network 3 multiagent-systems 3 agent-based modeling 3 artificial 3 transport 3 social network 3 differential 3 conservation 3 intelligence 3 genetic-programming 3 neural networks 3 strategy 2 transformers 2 numpy 2 example 2 hypervolume 2 genetic algorithms 2 population genetics 2 illustration 2 inference 2 covariance 2 agent 2 virus 2 Twisted 2 analysis 2 asynchronous 2 network 2 phylogenetic 2 epidemiology 2 evolutionary-algorithm 2 pypi 2 phylodynamics 2 orthology-assignments 2 sqlalchemy 2