Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "evolution" keyword

nsde 0.1.1
Non-dominated Sorting Differential Evolution (NSDE) Algorithm
15 versions - Latest release: about 4 years ago - 1 dependent repositories - 65 downloads last month - 0 stars on GitHub - 1 maintainer
phyddle 0.2.0
Software to fiddle around with deep learning for phylogenetic models
7 versions - Latest release: about 2 months ago - 37 downloads last month - 3 stars on GitHub - 2 maintainers
genepy 1.0.0b1
Simple genetic programming library using tree representation for individuals
1 version - Latest release: almost 7 years ago - 15 downloads last month - 1 stars on GitHub - 1 maintainer
Top 4.1% on pypi.org
pyglove 0.4.4
PyGlove: A library for manipulating Python objects.
642 versions - Latest release: 5 months ago - 7 dependent packages - 6 dependent repositories - 2.73 million downloads last month - 321 stars on GitHub - 1 maintainer
phylosequel 0.0.2
Toolkit and library for BioSQL database interaction and operations.
2 versions - Latest release: about 15 years ago - 1 dependent repositories - 10 downloads last month - 1 maintainer
pioreactor 24.5.13
The core Python app of the Pioreactor. Control your bioreactor through Python.
61 versions - Latest release: 8 days ago - 1 dependent repositories - 341 downloads last month - 87 stars on GitHub - 1 maintainer
Top 1.7% on pypi.org
dendropy 4.6.1
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, proc...
24 versions - Latest release: 12 months ago - 33 dependent packages - 109 dependent repositories - 6.91 thousand downloads last month - 3 maintainers
pglt v0.1-beta
pG-lt: An automated pipeline for phylogeney generation.
1 version - Latest release: about 9 years ago - 2 dependent repositories - 13 downloads last month - 3 stars on GitHub - 1 maintainer
dendropy-calver 2023.330.2
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, proc...
1 version - Latest release: about 1 year ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
visual-selection 0.2.1
A simple illustration of mutation aiding evolution
4 versions - Latest release: 2 months ago - 33 downloads last month - 2 stars on GitHub - 1 maintainer
zol 1.2.1
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e....
2 versions - Latest release: about 1 year ago - 27 downloads last month - 34 stars on GitHub - 1 maintainer
transcriptorthology 3.0.2
Algorithm to address Orthology and Paralogy at the Transcript Level
12 versions - Latest release: 6 months ago - 59 downloads last month - 1 stars on GitHub - 1 maintainer
virusrecom 1.1.5
An information-theory-based method for recombination detection of viral lineages.
12 versions - Latest release: about 1 month ago - 147 downloads last month - 8 stars on GitHub - 1 maintainer
cazomevolve 0.1.7
A bioinforamtic package for investigating the evolution of CAZomes
11 versions - Latest release: 10 months ago - 1 dependent repositories - 79 downloads last month - 4 stars on GitHub - 1 maintainer
evolocity 1.0.1
Evolutionary velocity with protein language models
7 versions - Latest release: over 1 year ago - 1 dependent repositories - 120 downloads last month - 77 stars on GitHub - 1 maintainer
curveball 0.2.16
Predicting competition results from growth curves
4 versions - Latest release: over 2 years ago - 2 dependent repositories - 108 downloads last month - 13 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
cogent3 2024.5.7a1
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems ...
21 versions - Latest release: 15 days ago - 5 dependent packages - 5 dependent repositories - 2.2 thousand downloads last month - 94 stars on GitHub - 1 maintainer
cratermaker 0.0.2rc0
Simulate the evolution of a landscape dominated by impact bombardment.
2 versions - Latest release: 3 months ago - 12 downloads last month - 3 stars on GitHub - 1 maintainer
phylotrackpy 0.2.0
A python phylogeny tracking module
10 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 2.86 thousand downloads last month - 9 stars on GitHub - 2 maintainers
oppoppopinit 2.0.1
PyPI package containing opposition learning operators and population initializers for evolutionar...
9 versions - Latest release: over 1 year ago - 1 dependent repositories - 1.51 thousand downloads last month - 6 stars on GitHub - 1 maintainer
Top 5.2% on pypi.org
evotorch 0.5.1
EvoTorch is an advanced evolutionary computation library built directly on top of PyTorch, create...
10 versions - Latest release: 7 months ago - 2 dependent packages - 5 dependent repositories - 901 downloads last month - 971 stars on GitHub - 1 maintainer
cometspy 0.4.20
The Python interface to COMETS
27 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 245 downloads last month - 10 stars on GitHub - 4 maintainers
multi-agent-decision 0.3
Simulates the actions which agents take under multi-agent systems and social networks
3 versions - Latest release: about 1 month ago - 117 downloads last month - 1 stars on GitHub - 1 maintainer
pyploid 1.1.5
Framework for building experiments or educational material regarding evolutionary algorithms and ...
9 versions - Latest release: 3 months ago - 31 downloads last month - 0 stars on GitLab.com - 1 maintainer
doublemanning 1.0.0a0
Stage-discharge relationships: double-Manning approach
1 version - Latest release: 5 months ago - 14 downloads last month - 0 stars on GitHub - 1 maintainer
ervdetective 1.0.1 removed
An efficient pipeline for identification and annotation of endogenous retroviruses (ERVs)
3 versions - Latest release: 5 months ago - 25 downloads last month - 3 stars on GitHub - 1 maintainer
evolve-words 0.2.1
A simple illustration of mutation aiding evolution
4 versions - Latest release: about 1 month ago - 120 downloads last month - 1 stars on GitHub - 1 maintainer
darwinio 0.12.0
An evolution simulator
35 versions - Latest release: 6 months ago - 288 downloads last month - 18 stars on GitHub - 1 maintainer
orthomap 0.0.1
extract orthomap from OrthoFinder output for query species
1 version - Latest release: about 1 year ago - 14 downloads last month - 6 stars on GitHub - 1 maintainer
multi-agent-coordination 0.2
Identification of strategic choices under multi-agent systems, coordination game and social networks
2 versions - Latest release: about 1 month ago - 91 downloads last month - 0 stars on GitHub - 1 maintainer
cafeplotter 0.2.0
A tool for plotting CAFE5 gene family expansion/contraction result
3 versions - Latest release: 8 months ago - 104 downloads last month - 17 stars on GitHub - 1 maintainer
phyplot 0.1.0
PhyloGrpah is a python package for plotting evolutionary trees and data.
1 version - Latest release: about 1 year ago - 18 downloads last month - 1 maintainer
differential-evolution 1.12.0
Differential Evolution Algorithm with OpenMDAO Driver
22 versions - Latest release: over 4 years ago - 1 dependent repositories - 235 downloads last month - 8 stars on GitHub - 1 maintainer
subpair 0.1.1
Fast pairwise cosine distance calculation and numba accelerated evolutionary matrix subset extrac...
1 version - Latest release: over 1 year ago - 1 dependent repositories - 9 downloads last month - 0 stars on GitHub - 1 maintainer
functionalfilet 0.5.2
Evolutionnary Neural Network Model with PyTorch
9 versions - Latest release: over 1 year ago - 51 downloads last month - 0 stars on GitHub - 1 maintainer
game-simulator-test 0.26 removed
Creates simulations of any n*n game specified with payoff matrix
23 versions - Latest release: 8 months ago - 0 downloads last month - 0 stars on GitHub - 1 maintainer
norm-evolution-network 0.3
Simulates which strategy evolves when agents are connected with each others via social network
3 versions - Latest release: almost 2 years ago - 11 downloads last month - 0 stars on GitHub - 1 maintainer
norm-evolution 0.4
Simulates which strategy evolves when agents immitate their neighbors
4 versions - Latest release: almost 2 years ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
parett 1.0.1
Python Automated Retrieval of TimeTree data
1 version - Latest release: almost 2 years ago - 11 downloads last month - 1 stars on GitHub - 1 maintainer
evolvedominion 1.0.3
A CLI for evolving and playing against strategies for Dominion.
4 versions - Latest release: almost 2 years ago - 1 dependent repositories - 35 downloads last month - 0 stars on GitHub - 1 maintainer
populy 0.5.1
Simulate forward time population genetics evolution with Python
6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 39 downloads last month - 0 stars on GitHub - 1 maintainer
ottar 0.5.0
Ode To Transient Ancho de los Rivers: Transient evolution of river-channel width
4 versions - Latest release: 10 months ago - 1 dependent repositories - 22 downloads last month - 5 stars on GitHub - 1 maintainer
vitaoptimum 1.5.8
Global Optimum Search Algorithms Python Interface Package
23 versions - Latest release: over 4 years ago - 1 dependent repositories - 92 downloads last month - 1 maintainer
treesnake 0.1.0
TreeSnake is a python package for inferring evolutionary trees
1 version - Latest release: over 2 years ago - 1 dependent repositories - 16 downloads last month - 1 maintainer
tinyevolver 0.1
A simple, tiny engine for creating genetic algorithms.
1 version - Latest release: over 8 years ago - 2 dependent repositories - 12 downloads last month - 4 stars on GitHub - 1 maintainer
thoipapy 1.2.0
Machine-learning prediction of residues driving homotypic transmembrane interactions.
12 versions - Latest release: over 3 years ago - 1 dependent repositories - 103 downloads last month - 2 stars on GitHub - 1 maintainer
sqlturk 0.9.1
Database schema migration tool that works in SQL
2 versions - Latest release: over 14 years ago - 2 dependent repositories - 22 downloads last month - 1 maintainer
sqlmigrate 1.0.0
Simple raw-SQL database schema migration tool.
1 version - Latest release: almost 9 years ago - 3 dependent repositories - 231 downloads last month - 1 maintainer
sonicparanoid 2.0.5
SonicParanoid: fast, accurate, and comprehensive orthology inference with machine learning and la...
65 versions - Latest release: about 1 month ago - 1 dependent repositories - 895 downloads last month - 4 stars on GitLab.com - 1 maintainer
simplestsimulatedannealing 1.0.2
Flexible implementation of Simulated Annealing algorithm for function minimization
3 versions - Latest release: over 3 years ago - 1 dependent repositories - 55 downloads last month - 1 stars on GitHub - 1 maintainer
seeds 1.0.13
Stochastic Ecological and Evolutionary Dynamics System
14 versions - Latest release: over 12 years ago - 2 dependent repositories - 76 downloads last month - 20 stars on GitHub - 1 maintainer
sci-phy 0.1.0
Sci-Phy is a python package for the statistical analysis and modelling of evolved data using phy...
1 version - Latest release: over 2 years ago - 1 dependent repositories - 24 downloads last month - 1 maintainer
pyneurgen 0.3.1
Python Neural Genetic Hybrids
2 versions - Latest release: about 12 years ago - 3 dependent repositories - 49 downloads last month - 1 maintainer
Top 9.5% on pypi.org
pymultievolve 0.0.2
Artificial Evolution with handling of multicore
2 versions - Latest release: 9 months ago - 3 dependent repositories - 1 maintainer
pyfde 1.3.0
A fast differential evolution module
7 versions - Latest release: over 4 years ago - 1 dependent repositories - 29 downloads last month - 1 maintainer
pyasr 0.6.1
Ancestral sequence reconstruction using Python
5 versions - Latest release: almost 6 years ago - 1 dependent repositories - 55 downloads last month - 11 stars on GitHub - 1 maintainer
prwlr 0.0.4
Annotate genetic interactions networks with phylogenetic profiles and other attributes.
4 versions - Latest release: over 3 years ago - 1 dependent repositories - 25 downloads last month - 2 stars on GitHub - 1 maintainer
plentyofbugs 0.0.92
find your newly sequenced isolate the perfect companion reference genome
12 versions - Latest release: over 4 years ago - 1 dependent repositories - 36 downloads last month - 2 stars on GitHub - 1 maintainer
phylograph 0.1.0 removed
PhyloGraph is a python package for plotting evolutionary trees and data.
1 version - Latest release: over 2 years ago - 10 downloads last month - 1 maintainer
phykit 1.19.4
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
65 versions - Latest release: 18 days ago - 1 dependent repositories - 1.06 thousand downloads last month - 46 stars on GitHub - 1 maintainer
orthosnap 1.3.0
orthosnap, identify orthologous subgroups of genes in large orthologous groups of genes.
8 versions - Latest release: 5 months ago - 1 dependent repositories - 105 downloads last month - 18 stars on GitHub - 1 maintainer
orthofisher 1.1.0
orthofisher
20 versions - Latest release: 7 months ago - 1 dependent repositories - 187 downloads last month - 24 stars on GitHub - 1 maintainer
opqua 1.2.1
An epidemiological modeling framework for population genetics and evolution.
37 versions - Latest release: 4 months ago - 1 dependent repositories - 209 downloads last month - 16 stars on GitHub - 1 maintainer
open-utils 0.0.6
you didn't think you needed it til you did
5 versions - Latest release: almost 5 years ago - 1 dependent repositories - 21 downloads last month - 9 stars on GitHub - 1 maintainer
metevolsim 1.0.0
MetEvolSim (Metabolome Evolution Simulator) Python Package
29 versions - Latest release: 8 months ago - 1 dependent repositories - 204 downloads last month - 4 stars on GitHub - 1 maintainer
mapgl 1.3.1
Prediction of lineage-specific gain and loss of sequence elements using phylogenetic maximum pars...
12 versions - Latest release: almost 4 years ago - 1 dependent repositories - 71 downloads last month - 3 stars on GitHub - 1 maintainer
korbinian 0.3.4
Bioinformatic sequence analysis of membrane proteins.
2 versions - Latest release: almost 6 years ago - 1 dependent repositories - 22 downloads last month - 2 stars on GitHub - 1 maintainer
jlsteenwyk-biokit 1.1.1
a versatile toolkit for processing and analyzing diverse types of sequence data
15 versions - Latest release: 5 months ago - 1 dependent repositories - 126 downloads last month - 20 stars on GitHub - 1 maintainer
Top 7.5% on pypi.org
hyphy-python 0.1.11
HyPhy package interface library
8 versions - Latest release: about 1 year ago - 1 dependent package - 2 dependent repositories - 195 downloads last month - 195 stars on GitHub - 2 maintainers
hyphy 0.1.3
HyPhy package interface library
2 versions - Latest release: over 7 years ago - 1 dependent repositories - 6 downloads last month - 194 stars on GitHub - 1 maintainer
holland 0.0.2
Genetic Algorithm Library
2 versions - Latest release: over 5 years ago - 1 dependent repositories - 33 downloads last month - 1 stars on GitHub - 1 maintainer
happie 0.3.1
happie: horizontally acquired partial pangenome of inserted elements
1 version - Latest release: over 4 years ago - 1 dependent repositories - 16 downloads last month - 6 stars on GitHub - 1 maintainer
hankshaw 2.0.0
Model for The Evolution of Cooperation by the Hankshaw Effect
3 versions - Latest release: over 8 years ago - 2 dependent repositories - 12 downloads last month - 1 stars on GitHub - 1 maintainer
grlp 1.8.0
Evolves gravel-bed river long profiles
10 versions - Latest release: 11 months ago - 1 dependent repositories - 81 downloads last month - 4 stars on GitHub - 1 maintainer
gpseer 0.3.3
Python API to infer missing data in sparsely sampled genotype-phenotype maps.
6 versions - Latest release: about 4 years ago - 1 dependent repositories - 30 downloads last month - 5 stars on GitHub - 3 maintainers
gpmap 0.7.0
A Python API for managing genotype-phenotype map data
15 versions - Latest release: almost 4 years ago - 7 dependent repositories - 137 downloads last month - 11 stars on GitHub - 3 maintainers
galcem 0.0.2b0
Galactic Chemical Evolution
3 versions - Latest release: about 2 years ago - 1 dependent repositories - 10 downloads last month - 9 stars on GitHub - 2 maintainers
fastsr 0.1.0
Fast symbolic regression powered by genetic programming.
1 version - Latest release: over 6 years ago - 2 dependent repositories - 26 downloads last month - 11 stars on GitHub - 1 maintainer
fastgp 0.1.0
Fast genetic programming.
1 version - Latest release: over 6 years ago - 3 dependent repositories - 27 downloads last month - 11 stars on GitHub - 1 maintainer
evostra 2.5.2 💰
Evolution Strategy Solver in Python
5 versions - Latest release: almost 6 years ago - 9 dependent repositories - 46 downloads last month - 265 stars on GitHub - 1 maintainer
evoalgos 0.4.1
Modular evolutionary algorithms
12 versions - Latest release: about 8 years ago - 3 dependent repositories - 50 downloads last month - 1 maintainer
ercs 1.0.1
Coalescent simulations in continuous space
2 versions - Latest release: over 11 years ago - 5 dependent repositories - 11 downloads last month - 2 stars on GitHub - 1 maintainer
epistasis 0.7.5
A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
17 versions - Latest release: over 2 years ago - 3 dependent repositories - 112 downloads last month - 32 stars on GitHub - 3 maintainers
edo 0.3.6
Generating artificial datasets through evolution.
15 versions - Latest release: over 3 years ago - 2 dependent repositories - 81 downloads last month - 13 stars on GitHub - 1 maintainer
eao 0.8
Evolutionary Optimization
8 versions - Latest release: about 3 years ago - 1 dependent repositories - 67 downloads last month - 5 stars on GitHub - 1 maintainer
deepevolution 0.0.4
A genetic algorithm to evolve tensorflow keras neural networks.
4 versions - Latest release: over 3 years ago - 1 dependent repositories - 27 downloads last month - 6 stars on GitHub - 1 maintainer
darwinpy 0.0.2
A evolutionary computation module
2 versions - Latest release: about 1 year ago - 1 dependent repositories - 22 downloads last month - 1 maintainer
crianza 0.1.8
Simple Forth-like VM and genetic programming framework.
8 versions - Latest release: about 9 years ago - 2 dependent repositories - 43 downloads last month - 47 stars on GitHub - 1 maintainer
cost2fitness 2.0.7
PyPI package for 1) conversion cost values (less is better) to fitness values (more is better) an...
10 versions - Latest release: over 3 years ago - 1 dependent repositories - 83 downloads last month - 1 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
cogent 1.5.3
COmparative GENomics Toolkit
12 versions - Latest release: over 11 years ago - 24 dependent repositories - 197 downloads last month - 86 stars on GitHub - 4 maintainers
codon 0.0.1
Non-Stationary Codon Model Fitting
1 version - Latest release: almost 8 years ago - 2 dependent repositories - 78 downloads last month - 1 maintainer
clermontpcr 0.3.4
clermontpcr: phylotype your strains, in silico
4 versions - Latest release: about 6 years ago - 24 downloads last month - 9 stars on GitHub - 1 maintainer
heist-hemiplasy 0.3.1
Hemiplasy Inference Simulation Tool. For characterising hemiplasy given traits mapped onto a spec...
1 version - Latest release: about 4 years ago - 1 dependent repositories - 23 downloads last month - 5 stars on GitHub - 1 maintainer
orphhca 0.5
Combined Pfam and HCA ananlysis to improve domain annotation
1 version - Latest release: about 9 years ago - 1 dependent repositories - 8 downloads last month - 1 maintainer
clipkit 2.3.0
Alignment trimming software for phylogenetics.
44 versions - Latest release: 22 days ago - 1 dependent repositories - 728 downloads last month - 52 stars on GitHub - 1 maintainer
asyncluster 0.3
Asynchronous cluster management based on the Twisted framework, with evolutionary computing tools...
1 version - Latest release: about 16 years ago - 12 downloads last month - 1 maintainer
transmutator 0.1
General purpose migration framework (upgrades, downgrades).
1 version - Latest release: almost 9 years ago - 2 dependent repositories - 8 downloads last month - 1 stars on GitHub - 1 maintainer
ezclermont 0.7.0
ezclermont: phylotype your E. coli strains, in silico
10 versions - Latest release: over 2 years ago - 1 dependent repositories - 53 downloads last month - 9 stars on GitHub - 1 maintainer
deap-er 2.0.0
Distributed Evolutionary Algorithms in Python - Entirely Reworked
3 versions - Latest release: almost 2 years ago - 20 downloads last month - 11 stars on GitHub - 1 maintainer
ecotrajectory 0.1.0
A package for simulating simple ecological communities.
1 version - Latest release: almost 5 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics 28 python 23 phylogenetics 23 simulation 17 genomics 15 biology 13 optimization 13 evolutionary 10 evolutionary-algorithms 9 genetic 9 phylogeny 9 machine 7 learning 7 algorithms 7 evolutionary game 6 social norms 6 game theory 6 agent-based-modeling 6 evolutionary-computation 6 protein 6 norms 6 genetics 6 ecology 5 science 5 development 5 algorithm 5 evolutionary-biology 5 machine-learning 5 gametheory 5 phylogenomics 5 landscape 5 evolutionary algorithms 5 orthology-inference 4 evolutionarygame 4 multi-agents 4 statistics 4 comparative-genomics 4 agent-based-simulation 4 transport 4 fast 4 population 4 easy 4 genetic algorithm 4 deep-learning 4 social-network 3 conservation 3 ai 3 database 3 computational-biology 3 orthology 3 single-cell 3 coalescent 3 systematics 3 differential 3 generator 3 genetic programming 3 sediment 3 geomorphology 3 pypi-package 3 artificial-intelligence 3 migration 3 intelligence 3 fluvial 3 multiagent-systems 3 pytorch 3 social network 3 phylogenetic-trees 2 optimization-algorithms 2 parallel 2 covariance 2 molecular-evolution 2 agent-based modeling 2 computation 2 artificial intelligence 2 computational-economics 2 genetic-programming 2 tumor phylogeny 2 single cell 2 neural-networks 2 distributed 2 reinforcement learning 2 black-box 2 reinforcement-learning 2 neuroevolution 2 metabolism 2 pareto-efficiency 2 normal-form-games 2 genetic-algorithms 2 data science 2 nash-equilibrium 2 analysis 2 artificial-life 2 sequence 2 evolve 2 nash-equilibria 2 epidemiology 2 multi-agent systems 2 computational economics 2 phylodynamics 2 pypi 2