pypi.org "fasta" keyword
View the packages on the pypi.org package registry that are tagged with the "fasta" keyword.
rnajena-sugar 0.8.0
A Python framework for bioinformatics10 versions - Latest release: 10 days ago - 392 downloads last month - 4 stars on GitHub - 1 maintainer
metaomestats 0.4
Scripts for calculating statistics from FASTA sequences4 versions - Latest release: about 3 years ago - 2 dependent packages - 1 dependent repositories - 151 downloads last month - 2 stars on GitHub - 2 maintainers
clonai 0.0.1 💰
Python bindings for the DNA engineering library poly2 versions - Latest release: 4 months ago - 103 downloads last month - 655 stars on GitHub - 1 maintainer
Top 1.9% on pypi.org
90 versions - Latest release: about 1 year ago - 76 dependent packages - 268 dependent repositories - 334 thousand downloads last month - 468 stars on GitHub - 1 maintainer
pyfaidx 0.8.1
pyfaidx: efficient pythonic random access to fasta subsequences90 versions - Latest release: about 1 year ago - 76 dependent packages - 268 dependent repositories - 334 thousand downloads last month - 468 stars on GitHub - 1 maintainer
dnaskittleutils 1.0.13
Bioinformatics functions that have been useful in multiple projects. Manipulating FASTA files, e...2 versions - Latest release: over 5 years ago - 1 dependent repositories - 104 downloads last month - 0 stars on GitHub - 1 maintainer
codon-optimizer 0.2.0
Substitute codons by those that are the most frequent in a specific organism.1 version - Latest release: about 7 years ago - 30 downloads last month - 1 stars on GitHub - 1 maintainer
mgkit 0.5.8
Metagenomics Framework30 versions - Latest release: over 3 years ago - 2 dependent repositories - 1.09 thousand downloads last month - 17 stars on GitHub - 1 maintainer
ntai 1.0.0
Nucleotide A.I.20 versions - Latest release: over 3 years ago - 1 dependent repositories - 715 downloads last month - 0 stars on gitlab.com - 1 maintainer
genochain 0.0.7
Storing and versioning genomics data on a blockchain2 versions - Latest release: almost 2 years ago - 73 downloads last month - 1 maintainer
bedpy 0.0.5
Making bed files computable5 versions - Latest release: over 5 years ago - 1 dependent repositories - 208 downloads last month - 0 stars on gitlab.com - 1 maintainer
filterx 0.3.6
A command line tool to filter data by using python-like syntax16 versions - Latest release: 2 months ago - 4.13 thousand downloads last month - 22 stars on GitHub - 1 maintainer
fasta-lib 0.0.2
tool to parse fasta files2 versions - Latest release: over 2 years ago - 71 downloads last month - 1 maintainer
rnaseeker 1.0.0
RNA-seq scripts and libraries1 version - Latest release: about 1 year ago - 47 downloads last month - 1 stars on GitHub - 1 maintainer
crops 0.1.1
Cropping and Renumbering Operations for PDB structure and Sequence files2 versions - Latest release: about 4 years ago - 1 dependent repositories - 63 downloads last month - 1 stars on GitHub - 1 maintainer
salmonella_crispr_typing 1.0.1
This tool gets a CRISPR profile by identifying the presence of known spacers and direct repeats (...2 versions - Latest release: over 7 years ago - 42 downloads last month - 1 maintainer
freqgen 0.1.0
Generate DNA sequences with specified amino acid, codon, and k-mer frequencies.1 version - Latest release: over 6 years ago - 1 dependent repositories - 56 downloads last month - 16 stars on GitHub - 1 maintainer
fastaparser 1.1.1 💰
A Python FASTA file Parser and Writer.3 versions - Latest release: over 2 years ago - 2 dependent packages - 8 dependent repositories - 1.02 thousand downloads last month - 17 stars on GitHub - 1 maintainer
Top 3.6% on pypi.org
68 versions - Latest release: 4 months ago - 18 dependent packages - 28 dependent repositories - 37.2 thousand downloads last month - 277 stars on GitHub - 1 maintainer
pyfastx 2.2.0
pyfastx is a python module for fast random access to sequences from plain and gzipped FASTA/Q file68 versions - Latest release: 4 months ago - 18 dependent packages - 28 dependent repositories - 37.2 thousand downloads last month - 277 stars on GitHub - 1 maintainer
storf-reporter 1.4.4
StORF-Reporter - A a tool that takes an annotated genome and returns missing CDS genes (Stop-to-S...47 versions - Latest release: about 1 month ago - 1 dependent repositories - 1.21 thousand downloads last month - 16 stars on GitHub - 1 maintainer
aa2atom 1.25
Change amino-acidic sequence into counts of atoms.8 versions - Latest release: almost 6 years ago - 1 dependent repositories - 282 downloads last month - 2 stars on GitHub - 1 maintainer
dnadesign 0.1.8
Python bindings for dnadesign9 versions - Latest release: 7 months ago - 604 downloads last month - 23 stars on GitHub - 1 maintainer
vcfsynonymous 0.2.0
Detect synonymous genetic variants in VCF18 versions - Latest release: over 4 years ago - 1 dependent repositories - 372 downloads last month - 1 stars on GitHub - 1 maintainer
Top 3.3% on pypi.org
115 versions - Latest release: about 1 month ago - 7 dependent packages - 15 dependent repositories - 41.4 thousand downloads last month - 172 stars on GitHub - 2 maintainers
pydna 5.5.0
Representing double stranded DNA and functions for simulating cloning and homologous recombinatio...115 versions - Latest release: about 1 month ago - 7 dependent packages - 15 dependent repositories - 41.4 thousand downloads last month - 172 stars on GitHub - 2 maintainers
smof 2.22.4
UNIX-style utilities for FASTA file exploration14 versions - Latest release: 9 months ago - 2 dependent repositories - 515 downloads last month - 16 stars on GitHub - 1 maintainer
Top 9.7% on pypi.org
1 version - Latest release: almost 2 years ago - 1 dependent repositories - 942 downloads last month - 498 stars on GitHub - 1 maintainer
jupyterlab-mathjax2 4.0.0 💰
A MathJax Typesetting provider for JupyterLab 4 and above1 version - Latest release: almost 2 years ago - 1 dependent repositories - 942 downloads last month - 498 stars on GitHub - 1 maintainer
Top 5.0% on pypi.org
4 versions - Latest release: over 3 years ago - 1 dependent package - 10 dependent repositories - 3.99 thousand downloads last month - 498 stars on GitHub - 1 maintainer
jupyterlab-mathjax3 4.3.0 💰
MathJax 3 math renderer for JupyterLab4 versions - Latest release: over 3 years ago - 1 dependent package - 10 dependent repositories - 3.99 thousand downloads last month - 498 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
4 versions - Latest release: over 3 years ago - 2 dependent repositories - 190 downloads last month - 498 stars on GitHub - 1 maintainer
jupyterlab-vega2 3.2.0 💰
JupyterLab - Vega 2 and Vega-Lite 1 Mime Renderer Extension4 versions - Latest release: over 3 years ago - 2 dependent repositories - 190 downloads last month - 498 stars on GitHub - 1 maintainer
Top 2.9% on pypi.org
14 versions - Latest release: almost 2 years ago - 5 dependent packages - 201 dependent repositories - 7.4 thousand downloads last month - 498 stars on GitHub - 1 maintainer
jupyterlab-geojson 3.4.0 💰
GeoJSON renderer for JupyterLab14 versions - Latest release: almost 2 years ago - 5 dependent packages - 201 dependent repositories - 7.4 thousand downloads last month - 498 stars on GitHub - 1 maintainer
Top 5.0% on pypi.org
5 versions - Latest release: almost 2 years ago - 1 dependent package - 3 dependent repositories - 794 downloads last month - 498 stars on GitHub - 1 maintainer
jupyterlab-katex 3.4.0 💰
KaTeX math renderer for JupyterLab5 versions - Latest release: almost 2 years ago - 1 dependent package - 3 dependent repositories - 794 downloads last month - 498 stars on GitHub - 1 maintainer
Top 3.7% on pypi.org
4 versions - Latest release: almost 2 years ago - 192 dependent repositories - 3.18 thousand downloads last month - 498 stars on GitHub - 1 maintainer
jupyterlab-fasta 3.3.0 💰
Fasta renderer for JupyterLab4 versions - Latest release: almost 2 years ago - 192 dependent repositories - 3.18 thousand downloads last month - 498 stars on GitHub - 1 maintainer
Top 7.0% on pypi.org
5 versions - Latest release: almost 2 years ago - 2 dependent repositories - 293 downloads last month - 498 stars on GitHub - 1 maintainer
jupyterlab-vega3 3.3.0 💰
JupyterLab - Vega 3 and Vega-Lite 2 Mime Renderer Extension5 versions - Latest release: almost 2 years ago - 2 dependent repositories - 293 downloads last month - 498 stars on GitHub - 1 maintainer
discere 0.0.4
Protein Feature Extraction package for Machine Learning1 version - Latest release: over 5 years ago - 1 dependent repositories - 75 downloads last month - 19 stars on GitHub - 1 maintainer
pytrapment 1.0.1
pytrapment: create an entrapment database for proteomic mass spectrometry analysis1 version - Latest release: almost 4 years ago - 1 dependent repositories - 27 downloads last month - 1 stars on GitHub - 1 maintainer
bio-wrangler 0.2
A bioinformatics data wrangling package for FASTA, FASTQ, VCF, and GFF files.2 versions - Latest release: 6 months ago - 86 downloads last month - 1 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
27 versions - Latest release: 6 months ago - 1 dependent repositories - 655 downloads last month - 521 stars on GitHub - 1 maintainer
biocode 0.12.0
Bioinformatics code libraries and scripts27 versions - Latest release: 6 months ago - 1 dependent repositories - 655 downloads last month - 521 stars on GitHub - 1 maintainer
perf-ssr 0.4.8
PERF is an exhaustive repeat finder10 versions - Latest release: almost 3 years ago - 1 dependent repositories - 338 downloads last month - 32 stars on GitHub - 1 maintainer
hchacha 1.0.5
Human CHromosome Accession CHAnge - Convert between different human chromosome naming systems (of...6 versions - Latest release: over 1 year ago - 209 downloads last month - 1 maintainer
py-fasta-validator 0.6
A small, lightweight, fast fasta validator written in C4 versions - Latest release: about 2 years ago - 1 dependent repositories - 428 downloads last month - 7 stars on GitHub - 1 maintainer
bfasta 0.1.1
Simple fasta reader with no dependencies2 versions - Latest release: about 2 years ago - 65 downloads last month - 0 stars on GitHub - 1 maintainer
fasta-manager 1.3.2
Manage your fasta files5 versions - Latest release: 11 months ago - 178 downloads last month - 0 stars on GitHub - 1 maintainer
b2btools 3.0.7
bio2Byte software suite to predict protein biophysical properties from their amino-acid sequences49 versions - Latest release: 12 months ago - 1.37 thousand downloads last month - 3 maintainers
tinyfasta 0.1.0
Tiny FASTA package, without dependencies, for processing biological sequence files.3 versions - Latest release: almost 10 years ago - 3 dependent repositories - 47 downloads last month - 1 stars on GitHub - 1 maintainer
redundans 0.13a5
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.6 versions - Latest release: about 8 years ago - 1 dependent repositories - 169 downloads last month - 107 stars on GitHub - 1 maintainer
bacant 3.4.0
This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integ...7 versions - Latest release: over 2 years ago - 1 dependent repositories - 182 downloads last month - 20 stars on GitHub - 1 maintainer
fuc 0.38.0 💰
Frequently used commands in bioinformatics39 versions - Latest release: 10 months ago - 1 dependent package - 2 dependent repositories - 3.23 thousand downloads last month - 48 stars on GitHub - 1 maintainer
fastaframes 1.1.0
A very simple fasta file parser.5 versions - Latest release: over 1 year ago - 177 downloads last month - 5 stars on GitHub - 1 maintainer
galgo 0.0.6
A collection of algorithms and tools for genome analysis18 versions - Latest release: about 9 years ago - 2 dependent repositories - 389 downloads last month - 1 stars on GitHub - 1 maintainer
genbank-download 0.5
a small script to download nucleotide sequences from genbank using an accession number.1 version - Latest release: over 15 years ago - 2 dependent repositories - 34 downloads last month - 1 maintainer
profasta 0.0.5
A Python library for working with protein containing FASTA files.5 versions - Latest release: about 1 year ago - 206 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.1% on pypi.org
27 versions - Latest release: about 11 years ago - 4 dependent packages - 57 dependent repositories - 1.74 thousand downloads last month - 87 stars on GitHub - 1 maintainer
pyfasta 0.5.2 💰
fast, memory-efficient, pythonic (and command-line) access to fasta sequence files27 versions - Latest release: about 11 years ago - 4 dependent packages - 57 dependent repositories - 1.74 thousand downloads last month - 87 stars on GitHub - 1 maintainer
plasflow 1.1.0
PlasFlow - predicting plasmid sequences in metagenomic data4 versions - Latest release: almost 7 years ago - 1 dependent repositories - 172 downloads last month - 99 stars on GitHub - 1 maintainer
alphafoldfetch 0.0.1
A tool for downloading AlphaFold structures using UniProt IDs or FASTA files1 version - Latest release: 6 months ago - 79 downloads last month - 1 stars on GitHub - 1 maintainer
fasta2png 9
PNG visualization of nucleic acid or protein sequences8 versions - Latest release: 16 days ago - 1 dependent repositories - 164 downloads last month - 3 stars on GitHub - 1 maintainer
bioino 0.0.2
Lightweight IO and conversion for bioinformatics file formats.4 versions - Latest release: about 1 year ago - 1 dependent package - 209 downloads last month - 0 stars on GitHub - 1 maintainer
dgparse 0.0.1
Parser library for several biological data file formats1 version - Latest release: over 1 year ago - 2 dependent repositories - 1 maintainer
varpepdb 1.0.3
Generate reference database of variant peptides for peptide spectrum matching2 versions - Latest release: 7 months ago - 100 downloads last month - 0 stars on GitHub - 1 maintainer
cflib-pomo 1.2.2
Counts file library and conversion scripts.6 versions - Latest release: over 4 years ago - 182 downloads last month - 10 stars on GitHub - 1 maintainer
allfreqs 0.3.0
Calculate allele frequency from a sequence multialignment.3 versions - Latest release: about 5 years ago - 1 dependent repositories - 114 downloads last month - 2 stars on GitHub - 1 maintainer
biopython.convert 1.3.3
Interconvert various file formats supported by biopython. Supports querying records with JMESPath.9 versions - Latest release: almost 3 years ago - 139 downloads last month - 4 stars on GitHub - 1 maintainer
kmerdb 0.8.15 💰
Yet another correction to the 'yet another correction to just a k-mer counter...'50 versions - Latest release: 27 days ago - 1 dependent repositories - 662 downloads last month - 12 stars on GitHub - 1 maintainer
nebfa 0.0.2
Fasta file parser.2 versions - Latest release: over 15 years ago - 2 dependent repositories - 46 downloads last month - 1 maintainer
apobec 0.6
scripts for mutations counting in deep sequencing data6 versions - Latest release: almost 3 years ago - 1 dependent repositories - 152 downloads last month - 2 stars on GitHub - 1 maintainer
fluentdna 2.5.3
Visualization tool for bare fasta files. Supports whole genome alignment and multiple sequence a...3 versions - Latest release: over 5 years ago - 1 dependent repositories - 167 downloads last month - 59 stars on GitHub - 1 maintainer
fastx-barber 0.1.5
FASTX trimming tools7 versions - Latest release: almost 4 years ago - 1 dependent repositories - 168 downloads last month - 4 stars on GitHub - 1 maintainer
better-fasta-grep 1.0.4
Grep-like tool for retrieving matching sequence records from a FASTA file5 versions - Latest release: about 2 years ago - 1 dependent repositories - 185 downloads last month - 3 stars on GitHub - 2 maintainers
fastools 1.1.5
FASTA/FASTQ analysis and manipulation toolkit.26 versions - Latest release: over 2 years ago - 2 dependent repositories - 450 downloads last month - 0 stars on GitHub - 1 maintainer
fastafurious 1.2.5
Bundled utilities for manipulating and integrating FASTA files6 versions - Latest release: almost 3 years ago - 1 dependent repositories - 188 downloads last month - 2 stars on GitHub - 1 maintainer
phytab_splitter 0.01a
Splits Phytab files into FASTA1 version - Latest release: almost 11 years ago - 2 dependent repositories - 27 downloads last month - 0 stars on GitHub - 1 maintainer
minimizers 0.1.2
A Python package for extracting minimizers from sequence data3 versions - Latest release: almost 2 years ago - 89 downloads last month - 0 stars on GitHub - 1 maintainer
tfasta 0.3.4
Parses fasta files using templates and creates formatted fasta.4 versions - Latest release: about 11 years ago - 2 dependent repositories - 46 downloads last month - 0 stars on GitHub - 1 maintainer
nnfasta 0.1.36
Lightweight Neural Net efficient FASTA34 versions - Latest release: 11 months ago - 365 downloads last month - 0 stars on GitHub - 1 maintainer
bigwig-loader 0.1.4
Machine Learning Data Loader for Collections of BigWig Files5 versions - Latest release: 7 months ago - 102 downloads last month - 26 stars on GitHub - 1 maintainer
multisub 1.0
SARS-CoV-2 data converter between Genbank/GISAID/ENA formats1 version - Latest release: almost 4 years ago - 1 dependent repositories - 29 downloads last month - 34 stars on GitHub - 1 maintainer
protgraph 0.3.11
ProtGraph, a graph generator for proteins.20 versions - Latest release: 7 months ago - 1 dependent repositories - 434 downloads last month - 12 stars on GitHub - 1 maintainer
demultiplex 1.2.2
Demultiplex any number of FASTA or a FASTQ files based on a list of barcodes9 versions - Latest release: over 3 years ago - 1 dependent repositories - 256 downloads last month - 33 stars on GitHub - 1 maintainer
pymsa 0.8.1
Scoring Multiple Sequence Alignments with Python5 versions - Latest release: about 5 years ago - 1 dependent repositories - 331 downloads last month - 22 stars on GitHub - 1 maintainer
component-segmentation 1.0.1
Segmenting syntenic blocks of shared sequence.2 versions - Latest release: over 4 years ago - 52 downloads last month - 3 stars on GitHub - 1 maintainer
exoclasma-index 0.9.5
Reference Sequence and Capture Intervals Preparation for ExoClasma Suite2 versions - Latest release: over 2 years ago - 76 downloads last month - 0 stars on GitHub - 1 maintainer
minifasta 3.0.3
A simple FASTA read and write toolbox for small to medium size projects without dependencies.13 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 2.49 thousand downloads last month - 4 stars on GitHub - 1 maintainer
phylopypruner 1.2.6
tree-based orthology inference86 versions - Latest release: almost 3 years ago - 1 dependent repositories - 2.93 thousand downloads last month - 6 stars on gitlab.com - 1 maintainer
ktio 0.1
A collection of functions for fasta/fastq i/o in Python1 version - Latest release: over 7 years ago - 1 dependent repositories - 35 downloads last month - 0 stars on GitHub - 1 maintainer
conformine 0.0.1b14 removed
ConforMine, a predictor of conformational variability from amino acid sequence4 versions - Latest release: about 2 years ago - 73 downloads last month - 1 maintainer
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python
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