Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "fasta" keyword
ktio 0.1
A collection of functions for fasta/fastq i/o in Python1 version - Latest release: over 6 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
nnfasta 0.1.36
Lightweight Neural Net efficient FASTA34 versions - Latest release: 5 days ago - 3.79 thousand downloads last month - 0 stars on GitHub - 1 maintainer
kmerdb 0.8.2 💰
Yet another corretion to the 'yet another correction to just a k-mer counter...'37 versions - Latest release: 4 days ago - 1 dependent repositories - 255 downloads last month - 12 stars on GitHub - 1 maintainer
Top 3.6% on pypi.org
67 versions - Latest release: 3 months ago - 18 dependent packages - 28 dependent repositories - 16.7 thousand downloads last month - 235 stars on GitHub - 1 maintainer
pyfastx 2.1.0
pyfastx is a python module for fast random access to sequences from plain and gzipped FASTA/Q file67 versions - Latest release: 3 months ago - 18 dependent packages - 28 dependent repositories - 16.7 thousand downloads last month - 235 stars on GitHub - 1 maintainer
Top 1.9% on pypi.org
88 versions - Latest release: 4 months ago - 76 dependent packages - 268 dependent repositories - 111 thousand downloads last month - 440 stars on GitHub - 1 maintainer
pyfaidx 0.8.1
pyfaidx: efficient pythonic random access to fasta subsequences88 versions - Latest release: 4 months ago - 76 dependent packages - 268 dependent repositories - 111 thousand downloads last month - 440 stars on GitHub - 1 maintainer
Top 3.3% on pypi.org
112 versions - Latest release: over 1 year ago - 7 dependent packages - 15 dependent repositories - 7.41 thousand downloads last month - 155 stars on GitHub - 2 maintainers
pydna 5.2.0
Representing double stranded DNA and functions for simulating cloning and homologous recombinatio...112 versions - Latest release: over 1 year ago - 7 dependent packages - 15 dependent repositories - 7.41 thousand downloads last month - 155 stars on GitHub - 2 maintainers
crops 0.1.1
Cropping and Renumbering Operations for PDB structure and Sequence files2 versions - Latest release: about 3 years ago - 1 dependent repositories - 38 downloads last month - 1 stars on GitHub - 1 maintainer
minifasta 3.0.3
A simple FASTA read and write toolbox for small to medium size projects without dependencies.13 versions - Latest release: 10 months ago - 1 dependent package - 1 dependent repositories - 352 downloads last month - 3 stars on GitHub - 1 maintainer
Top 2.9% on pypi.org
14 versions - Latest release: 12 months ago - 5 dependent packages - 201 dependent repositories - 5.69 thousand downloads last month - 485 stars on GitHub - 1 maintainer
jupyterlab-geojson 3.4.0 💰
GeoJSON renderer for JupyterLab14 versions - Latest release: 12 months ago - 5 dependent packages - 201 dependent repositories - 5.69 thousand downloads last month - 485 stars on GitHub - 1 maintainer
fastaparser 1.1.1 💰
A Python FASTA file Parser and Writer.3 versions - Latest release: over 1 year ago - 2 dependent packages - 8 dependent repositories - 2.74 thousand downloads last month - 17 stars on GitHub - 1 maintainer
bioino 0.0.2
Lightweight IO and conversion for bioinformatics file formats.4 versions - Latest release: 3 months ago - 1 dependent package - 139 downloads last month - 0 stars on GitHub - 1 maintainer
profasta 0.0.5
A Python library for working with protein containing FASTA files.5 versions - Latest release: 28 days ago - 180 downloads last month - 0 stars on GitHub - 1 maintainer
rnaseeker 1.0.0
RNA-seq scripts and libraries1 version - Latest release: 4 months ago - 20 downloads last month - 1 stars on GitHub - 1 maintainer
genochain 0.0.7
Storing and versioning genomics data on a blockchain2 versions - Latest release: about 1 year ago - 24 downloads last month - 1 maintainer
fastaframes 1.1.0
A very simple fasta file parser.5 versions - Latest release: 8 months ago - 50 downloads last month - 2 stars on GitHub - 1 maintainer
minimizers 0.1.2
A Python package for extracting minimizers from sequence data3 versions - Latest release: about 1 year ago - 15 downloads last month - 0 stars on GitHub - 1 maintainer
conformine 0.0.1b14 removed
ConforMine, a predictor of conformational variability from amino acid sequence4 versions - Latest release: about 1 year ago - 73 downloads last month - 1 maintainer
fasta-lib 0.0.2
tool to parse fasta files2 versions - Latest release: over 1 year ago - 20 downloads last month - 1 maintainer
exoclasma-index 0.9.5
Reference Sequence and Capture Intervals Preparation for ExoClasma Suite2 versions - Latest release: over 1 year ago - 15 downloads last month - 0 stars on GitHub - 2 maintainers
fastafurious 1.2.5
Bundled utilities for manipulating and integrating FASTA files6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 40 downloads last month - 2 stars on GitHub - 1 maintainer
vcfsynonymous 0.2.0
Detect synonymous genetic variants in VCF18 versions - Latest release: over 3 years ago - 1 dependent repositories - 73 downloads last month - 1 stars on GitHub - 1 maintainer
tinyfasta 0.1.0
Tiny FASTA package, without dependencies, for processing biological sequence files.3 versions - Latest release: almost 9 years ago - 3 dependent repositories - 14 downloads last month - 1 stars on GitHub - 1 maintainer
tfasta 0.3.4
Parses fasta files using templates and creates formatted fasta.4 versions - Latest release: about 10 years ago - 2 dependent repositories - 26 downloads last month - 0 stars on GitHub - 1 maintainer
smof 2.22.2
UNIX-style utilities for FASTA file exploration12 versions - Latest release: almost 2 years ago - 2 dependent repositories - 118 downloads last month - 15 stars on GitHub - 1 maintainer
salmonella_crispr_typing 1.0.1
This tool gets a CRISPR profile by identifying the presence of known spacers and direct repeats (...2 versions - Latest release: over 6 years ago - 6 downloads last month - 1 maintainer
pytrapment 1.0.1
pytrapment: create an entrapment database for proteomic mass spectrometry analysis1 version - Latest release: about 3 years ago - 1 dependent repositories - 8 downloads last month - 1 stars on GitHub - 1 maintainer
pymsa 0.8.1
Scoring Multiple Sequence Alignments with Python5 versions - Latest release: over 4 years ago - 1 dependent repositories - 92 downloads last month - 20 stars on GitHub - 1 maintainer
Top 4.1% on pypi.org
27 versions - Latest release: about 10 years ago - 4 dependent packages - 57 dependent repositories - 2.22 thousand downloads last month - 86 stars on GitHub - 1 maintainer
pyfasta 0.5.2 💰
fast, memory-efficient, pythonic (and command-line) access to fasta sequence files27 versions - Latest release: about 10 years ago - 4 dependent packages - 57 dependent repositories - 2.22 thousand downloads last month - 86 stars on GitHub - 1 maintainer
plasflow 1.1.0
PlasFlow - predicting plasmid sequences in metagenomic data4 versions - Latest release: almost 6 years ago - 1 dependent repositories - 42 downloads last month - 88 stars on GitHub - 1 maintainer
phytab_splitter 0.01a
Splits Phytab files into FASTA1 version - Latest release: almost 10 years ago - 2 dependent repositories - 9 downloads last month - 0 stars on GitHub - 1 maintainer
phylopypruner 1.2.6
tree-based orthology inference86 versions - Latest release: about 2 years ago - 1 dependent repositories - 490 downloads last month - 6 stars on GitLab.com - 1 maintainer
ntai 1.0.0
Nucleotide A.I.20 versions - Latest release: over 2 years ago - 1 dependent repositories - 137 downloads last month - 0 stars on GitLab.com - 1 maintainer
nebfa 0.0.2
Fasta file parser.2 versions - Latest release: almost 15 years ago - 2 dependent repositories - 17 downloads last month - 1 maintainer
multisub 1.0
SARS-CoV-2 data converter between Genbank/GISAID/ENA formats1 version - Latest release: almost 3 years ago - 1 dependent repositories - 6 downloads last month - 34 stars on GitHub - 1 maintainer
mgkit 0.5.8
Metagenomics Framework30 versions - Latest release: over 2 years ago - 2 dependent repositories - 147 downloads last month - 12 stars on GitHub - 1 maintainer
metaomestats 0.4
Scripts for calculating statistics from FASTA sequences4 versions - Latest release: about 2 years ago - 2 dependent packages - 1 dependent repositories - 17 downloads last month - 2 stars on GitHub - 2 maintainers
genbank-download 0.5
a small script to download nucleotide sequences from genbank using an accession number.1 version - Latest release: over 14 years ago - 2 dependent repositories - 12 downloads last month - 1 maintainer
galgo 0.0.6
A collection of algorithms and tools for genome analysis18 versions - Latest release: over 8 years ago - 2 dependent repositories - 55 downloads last month - 1 stars on GitHub - 1 maintainer
freqgen 0.1.0
Generate DNA sequences with specified amino acid, codon, and k-mer frequencies.1 version - Latest release: over 5 years ago - 1 dependent repositories - 15 downloads last month - 16 stars on GitHub - 1 maintainer
fluentdna 2.5.3
Visualization tool for bare fasta files. Supports whole genome alignment and multiple sequence a...3 versions - Latest release: over 4 years ago - 1 dependent repositories - 27 downloads last month - 59 stars on GitHub - 1 maintainer
fasta2png 8
nucleic acid or protein sequence to png converter7 versions - Latest release: 8 months ago - 1 dependent repositories - 14 downloads last month - 3 stars on GitHub - 1 maintainer
dnaskittleutils 1.0.13
Bioinformatics functions that have been useful in multiple projects. Manipulating FASTA files, e...2 versions - Latest release: over 4 years ago - 1 dependent repositories - 37 downloads last month - 0 stars on GitHub - 1 maintainer
discere 0.0.4
Protein Feature Extraction package for Machine Learning1 version - Latest release: over 4 years ago - 1 dependent repositories - 20 downloads last month - 16 stars on GitHub - 1 maintainer
dgparse 0.0.1
Parser library for several biological data file formats1 version - Latest release: 9 months ago - 2 dependent repositories - 1 maintainer
demultiplex 1.2.2
Demultiplex any number of FASTA or a FASTQ files based on a list of barcodes9 versions - Latest release: over 2 years ago - 1 dependent repositories - 131 downloads last month - 27 stars on GitHub - 1 maintainer
codon-optimizer 0.2.0
Substitute codons by those that are the most frequent in a specific organism.1 version - Latest release: about 6 years ago - 14 downloads last month - 1 stars on GitHub - 1 maintainer
Top 9.7% on pypi.org
1 version - Latest release: 12 months ago - 1 dependent repositories - 701 downloads last month - 485 stars on GitHub - 1 maintainer
jupyterlab-mathjax2 4.0.0 💰
A MathJax Typesetting provider for JupyterLab 4 and above1 version - Latest release: 12 months ago - 1 dependent repositories - 701 downloads last month - 485 stars on GitHub - 1 maintainer
Top 7.0% on pypi.org
5 versions - Latest release: 12 months ago - 2 dependent repositories - 250 downloads last month - 485 stars on GitHub - 1 maintainer
jupyterlab-vega3 3.3.0 💰
JupyterLab - Vega 3 and Vega-Lite 2 Mime Renderer Extension5 versions - Latest release: 12 months ago - 2 dependent repositories - 250 downloads last month - 485 stars on GitHub - 1 maintainer
Top 5.0% on pypi.org
5 versions - Latest release: 12 months ago - 1 dependent package - 3 dependent repositories - 831 downloads last month - 485 stars on GitHub - 1 maintainer
jupyterlab-katex 3.4.0 💰
KaTeX math renderer for JupyterLab5 versions - Latest release: 12 months ago - 1 dependent package - 3 dependent repositories - 831 downloads last month - 485 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
4 versions - Latest release: over 2 years ago - 2 dependent repositories - 60 downloads last month - 485 stars on GitHub - 1 maintainer
jupyterlab-vega2 3.2.0 💰
JupyterLab - Vega 2 and Vega-Lite 1 Mime Renderer Extension4 versions - Latest release: over 2 years ago - 2 dependent repositories - 60 downloads last month - 485 stars on GitHub - 1 maintainer
better-fasta-grep 1.0.4
Grep-like tool for retrieving matching sequence records from a FASTA file5 versions - Latest release: about 1 year ago - 1 dependent repositories - 42 downloads last month - 3 stars on GitHub - 2 maintainers
bedpy 0.0.5
Making bed files computable5 versions - Latest release: almost 5 years ago - 1 dependent repositories - 57 downloads last month - 0 stars on GitLab.com - 1 maintainer
bacant 3.4.0
This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integ...7 versions - Latest release: over 1 year ago - 1 dependent repositories - 18 downloads last month - 16 stars on GitHub - 1 maintainer
b2btools 3.0.7
bio2Byte software suite to predict protein biophysical properties from their amino-acid sequences47 versions - Latest release: 23 days ago - 402 downloads last month - 2 maintainers
py-fasta-validator 0.6
A small, lightweight, fast fasta validator written in C4 versions - Latest release: over 1 year ago - 1 dependent repositories - 821 downloads last month - 6 stars on GitHub - 1 maintainer
Top 5.0% on pypi.org
4 versions - Latest release: over 2 years ago - 1 dependent package - 10 dependent repositories - 1.04 thousand downloads last month - 485 stars on GitHub - 1 maintainer
jupyterlab-mathjax3 4.3.0 💰
MathJax 3 math renderer for JupyterLab4 versions - Latest release: over 2 years ago - 1 dependent package - 10 dependent repositories - 1.04 thousand downloads last month - 485 stars on GitHub - 1 maintainer
apobec 0.6
scripts for mutations counting in deep sequencing data6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 46 downloads last month - 2 stars on GitHub - 1 maintainer
biopython.convert 1.3.3
Interconvert various file formats supported by biopython. Supports querying records with JMESPath.9 versions - Latest release: almost 2 years ago - 39 downloads last month - 3 stars on GitHub - 1 maintainer
component-segmentation 1.0.1
Segmenting syntenic blocks of shared sequence.2 versions - Latest release: over 3 years ago - 20 downloads last month - 3 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
26 versions - Latest release: 6 months ago - 1 dependent repositories - 293 downloads last month - 451 stars on GitHub - 1 maintainer
biocode 0.11.0
Bioinformatics code libraries and scripts26 versions - Latest release: 6 months ago - 1 dependent repositories - 293 downloads last month - 451 stars on GitHub - 1 maintainer
aa2atom 1.25
Change amino-acidic sequence into counts of atoms.8 versions - Latest release: almost 5 years ago - 1 dependent repositories - 63 downloads last month - 2 stars on GitHub - 1 maintainer
protgraph 0.3.10
ProtGraph, a graph generator for proteins.19 versions - Latest release: 4 months ago - 1 dependent repositories - 138 downloads last month - 9 stars on GitHub - 1 maintainer
Top 3.7% on pypi.org
4 versions - Latest release: 12 months ago - 192 dependent repositories - 2.47 thousand downloads last month - 485 stars on GitHub - 1 maintainer
jupyterlab-fasta 3.3.0 💰
Fasta renderer for JupyterLab4 versions - Latest release: 12 months ago - 192 dependent repositories - 2.47 thousand downloads last month - 485 stars on GitHub - 1 maintainer
fuc 0.37.0 💰
Frequently used commands in bioinformatics38 versions - Latest release: 8 months ago - 1 dependent package - 2 dependent repositories - 633 downloads last month - 44 stars on GitHub - 1 maintainer
storf-reporter 1.3.4
StORF-Reporter - A a tool that takes an annotated genome and returns missing CDS genes (Stop-to-S...42 versions - Latest release: 3 months ago - 1 dependent repositories - 224 downloads last month - 15 stars on GitHub - 1 maintainer
fastx-barber 0.1.5
FASTX trimming tools7 versions - Latest release: almost 3 years ago - 1 dependent repositories - 55 downloads last month - 4 stars on GitHub - 1 maintainer
hchacha 1.0.5
Human CHromosome Accession CHAnge - Convert between different human chromosome naming systems (of...6 versions - Latest release: 10 months ago - 35 downloads last month - 1 maintainer
cflib-pomo 1.2.2
Counts file library and conversion scripts.6 versions - Latest release: almost 4 years ago - 51 downloads last month - 6 stars on GitHub - 1 maintainer
bfasta 0.1.1
Simple fasta reader with no dependencies2 versions - Latest release: about 1 year ago - 29 downloads last month - 0 stars on GitHub - 1 maintainer
redundans 0.13a5
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.6 versions - Latest release: over 7 years ago - 1 dependent repositories - 50 downloads last month - 107 stars on GitHub - 1 maintainer
perf-ssr 0.4.8
PERF is an exhaustive repeat finder10 versions - Latest release: almost 2 years ago - 1 dependent repositories - 32 downloads last month - 33 stars on GitHub - 1 maintainer
allfreqs 0.3.0
Calculate allele frequency from a sequence multialignment.3 versions - Latest release: about 4 years ago - 1 dependent repositories - 27 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
38
python
14
genome
10
fastq
9
biology
8
geojson
7
jupyterlab
7
jupyterlab-extension
7
katex
7
plotly
7
vega
7
vega-lite
7
genomics
7
dna
7
sequence
7
genbank
5
gff
5
bed
5
biopython
5
protein
5
bio
3
bioinformatics-tool
3
visualization
3
pypi
3
vcf
3
python3
3
genetics
3
bio-informatics
3
bam
3
sam
3
proteomics
3
gff3
3
mass-spectrometry
2
JupyterLab3
2
tensorflow
2
metagenome
2
protein-sequences
2
parser
2
indexing
2
assembly
2
sequence-alignment
2
JupyterLab
2
msa
2
b2bTools
2
bgzf
2
proteins
2
sequencing
2
Jupyter
2
kmer
2
uniprot
2
contigs
2
metagenome-assembly
2
codon-optimizer
1
ngs
1
demultiplex
1
deskgen
1
codon-usage
1
grep
1
regular-expressions
1
grep-like
1
amr
1
bacteria
1
integron
1
transposon
1
bio2byte
1
protein-folding
1
mutation
1
apobec
1
hbv
1
genetic-algorithm
1
chain
1
alignment
1
species diversity
1
csv
1
chain-alignment
1
ddv
1
fasta-sequences
1
fluent
1
fluentdna
1
liftover
1
allele-frequencies
1
fna
1
faa
1
png
1
feature
1
extraction
1
machine
1
learning
1
deep
1
bioinformatics-analysis
1
bioinformatics-data
1
bioinformatics-pipeline
1
deep-learning
1
extract-features
1
feature-extraction
1
linux
1
machine-learning
1
protein-feature-extraction
1
windows
1
snapgene
1