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pypi.org "genetics" keyword

View the packages on the pypi.org package registry that are tagged with the "genetics" keyword.

tcga 0.0.22
Computational biology & bioinformatics utils
20 versions - Latest release: about 4 years ago - 1 dependent repositories - 479 downloads last month - 3 stars on GitHub - 1 maintainer
gwip 1.0.0
An automatic genome-wide imputation pipeline.
1 version - Latest release: almost 10 years ago - 2 dependent repositories - 47 downloads last month - 30 stars on GitHub - 1 maintainer
easyae 0.0.0
easy way for non-linear dimensionality increase or reduction
1 version - Latest release: about 6 years ago - 1 dependent repositories - 49 downloads last month - 0 stars on GitHub - 1 maintainer
bio-aid 0.3.1
Genetic Analysis Tools
22 versions - Latest release: over 1 year ago - 144 downloads last month - 1 maintainer
Top 1.7% on pypi.org
dendropy 5.0.1
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, proc...
28 versions - Latest release: 11 months ago - 33 dependent packages - 109 dependent repositories - 42.8 thousand downloads last month - 202 stars on GitHub - 3 maintainers
seq-pigeon 0.4.3
Pipeline tool for NGS data
17 versions - Latest release: over 4 years ago - 1 dependent repositories - 289 downloads last month - 963 stars on GitHub - 1 maintainer
snipar 0.0.21
Library and command line scripts for inferring identity-by-descent (IBD) segments shared between ...
16 versions - Latest release: about 19 hours ago - 1 dependent repositories - 2.37 thousand downloads last month - 31 stars on GitHub - 1 maintainer
bingenetic 2.6
BinGenetic is a lightweight Python library that enables seamless conversion between binary data a...
8 versions - Latest release: 2 days ago - 1 dependent repositories - 58 downloads last month - 1 stars on GitHub - 1 maintainer
openoligo 0.1.7
An open-source platform for programmatically interacting with and managing Nucleic acid sequences...
8 versions - Latest release: almost 2 years ago - 332 downloads last month - 2 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
lineage 4.4.1
tools for genetic genealogy and the analysis of consumer DNA test results
32 versions - Latest release: 9 months ago - 4 dependent repositories - 2.97 thousand downloads last month - 167 stars on GitHub - 1 maintainer
gepyto 0.10.1
Utilities and tools to interface with genomic databases and to facilitate common bioinformatics t...
3 versions - Latest release: over 9 years ago - 3 dependent repositories - 456 downloads last month - 7 stars on GitHub - 1 maintainer
rrat 0.6
Ribosomal RNA Allele Tree
6 versions - Latest release: about 7 years ago - 1 dependent repositories - 102 downloads last month - 0 stars on GitHub - 1 maintainer
igwas 0.1.0
Add your description here
1 version - Latest release: 6 months ago - 55 downloads last month - 6 stars on GitHub - 1 maintainer
easyae-samuel.revolinski 0.0.0
easy way for non-linear dimensionality increase or reduction
1 version - Latest release: about 6 years ago - 51 downloads last month - 0 stars on GitHub - 1 maintainer
grstools 0.4.0
Tools to manipulate genetic risk scores.
3 versions - Latest release: over 6 years ago - 1 dependent repositories - 138 downloads last month - 4 stars on GitHub - 1 maintainer
jupyter-locuszoom 0.1.1.dev0 💰
Jupyter Widget for LocusZoom
2 versions - Latest release: almost 2 years ago - 66 downloads last month - 5 stars on GitHub - 1 maintainer
warpedlmm 0.21
Warped linear mixed model
7 versions - Latest release: about 10 years ago - 1 dependent repositories - 187 downloads last month - 1 maintainer
geneparse 0.8.2
A suite of parse for genotype formats.
17 versions - Latest release: almost 2 years ago - 3 dependent repositories - 575 downloads last month - 5 stars on GitHub - 1 maintainer
cai-pypi 2.0.1
Python implementation of codon adaptation index, updated for PyPI compatibility
1 version - Latest release: 9 months ago - 393 downloads last month - 0 stars on GitHub - 1 maintainer
sigmap 1.1.2
SigmaP: Python package for predicting sigma70 promoter in Escherichia coli K-12
4 versions - Latest release: 3 months ago - 179 downloads last month - 0 stars on GitHub - 1 maintainer
plynk 0.1.2
Easy command over the PLINK software directly from Python
3 versions - Latest release: 10 months ago - 120 downloads last month - 0 stars on gitlab.com - 1 maintainer
genebe 0.1.21
GeneBe Client: A user-friendly system for annotating genetic variants
36 versions - Latest release: 3 days ago - 1.51 thousand downloads last month - 5 stars on GitHub - 1 maintainer
datasnakes 0.1.1a1
This package helps in the analysis of orthologous genes.
2 versions - Latest release: over 7 years ago - 1 dependent repositories - 45 downloads last month - 28 stars on GitHub - 1 maintainer
fwdpy11 0.24.5
Forward-time population genetic simulation in Python
113 versions - Latest release: 18 days ago - 1 dependent repositories - 7.78 thousand downloads last month - 30 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
sgkit 0.10.0
Statistical genetics toolkit
10 versions - Latest release: 12 days ago - 2 dependent packages - 5 dependent repositories - 2.31 thousand downloads last month - 253 stars on GitHub - 1 maintainer
bedms 0.2.0
BEDMess attribute standardizer for metadata attribute standardization
2 versions - Latest release: 5 months ago - 181 downloads last month - 3 stars on GitHub - 2 maintainers
hlmm 1.3.0a1
Functions for fitting heteroskedastic linear (mixed) models to genetic data
2 versions - Latest release: over 6 years ago - 1 dependent repositories - 112 downloads last month - 18 stars on GitHub - 1 maintainer
orthoevol 0.9.0a2
This package aids in the analysis of orthologous genes.
1 version - Latest release: over 7 years ago - 1 dependent repositories - 38 downloads last month - 28 stars on GitHub - 2 maintainers
brioche-enrichment 0.1.2a0
Bayesian tests for set enrichment.
1 version - Latest release: almost 2 years ago - 48 downloads last month - 1 stars on GitHub - 1 maintainer
genegist 0.1.5
Create summararies of groups of genes.
6 versions - Latest release: about 1 year ago - 287 downloads last month - 1 stars on GitHub - 1 maintainer
doublehelix 1.0.0a7
Genomic data manipulation tool
7 versions - Latest release: 6 months ago - 264 downloads last month - 2 stars on GitHub - 1 maintainer
biodumpy 0.1.3
A Comprehensive Biological Data Downloader from authoritative public databases like NCBI, Catalog...
3 versions - Latest release: 7 months ago - 86 downloads last month - 0 stars on GitHub - 1 maintainer
evolution-of-algebraic-terms 2.2.1
EAT is software implementation of the algorithms described in the paper Evolution of Algebraic Te...
16 versions - Latest release: 4 months ago - 535 downloads last month - 1 stars on GitHub - 1 maintainer
locuspocus 1.1.0
Genetic coordinates made easy!
7 versions - Latest release: almost 5 years ago - 4 dependent repositories - 139 downloads last month - 10 stars on GitHub - 1 maintainer
plinkliftover 0.5.2
Converts genotype data stored in plink's PED+MAP format from one genome build to another, using l...
7 versions - Latest release: over 1 year ago - 1 dependent repositories - 278 downloads last month - 5 stars on GitHub - 1 maintainer
scbamtools 0.8.3
High performance Cython + Python tools to process BAM files with tags as they arise in single-cel...
7 versions - Latest release: 5 days ago - 139 downloads last month - 2 stars on GitHub - 1 maintainer
sisrs 0.1.0
Site Identification from Short Read Sequences.
1 version - Latest release: about 7 years ago - 1 dependent repositories - 47 downloads last month - 0 stars on GitHub - 1 maintainer
lzgraphs 1.1.1
An Implementation of LZ76 Based Graphs for Repertoire Representation and Analysis
12 versions - Latest release: about 1 month ago - 268 downloads last month - 4 stars on GitHub - 1 maintainer
autopvs1-batch 2.0
A tool for batch run autoPVS1
1 version - Latest release: over 3 years ago - 1 dependent repositories - 60 downloads last month - 35 stars on GitHub - 1 maintainer
genotations 0.1.7
Genotations - python library to work with genomes and primers
16 versions - Latest release: over 1 year ago - 349 downloads last month - 3 stars on GitHub - 1 maintainer
vcfsynonymous 0.2.0
Detect synonymous genetic variants in VCF
18 versions - Latest release: over 4 years ago - 1 dependent repositories - 372 downloads last month - 1 stars on GitHub - 1 maintainer
Top 4.8% on pypi.org
pandas-plink 2.3.1
Read PLINK files into Pandas data frames
58 versions - Latest release: 10 months ago - 7 dependent packages - 22 dependent repositories - 8.06 thousand downloads last month - 84 stars on GitHub - 1 maintainer
genetest 0.6.0
A package to process and analyze genotypic and phenotypic data.
8 versions - Latest release: over 3 years ago - 1 dependent repositories - 295 downloads last month - 3 stars on GitHub - 1 maintainer
moose-classifier 0.11
Alignment based taxonomic classifier
6 versions - Latest release: 9 months ago - 1 dependent repositories - 186 downloads last month - 0 stars on GitHub - 1 maintainer
genoml2 1.0.1
GenoML is an automated machine learning tool that optimizes basic machine learning pipelines for ...
11 versions - Latest release: 5 months ago - 1 dependent repositories - 234 downloads last month - 29 stars on GitHub - 1 maintainer
pydigree 1.0.1
A package for operations on pedigree and genotype data
3 versions - Latest release: over 7 years ago - 1 dependent repositories - 77 downloads last month - 21 stars on GitHub - 1 maintainer
rnacounter 1.5.2
Estimate abundances of genomic features from read densities
14 versions - Latest release: about 10 years ago - 2 dependent repositories - 238 downloads last month - 1 stars on GitHub - 2 maintainers
leapdna 0.1.0
A Python 3.9 implementation of the leapdna toolkit
1 version - Latest release: about 4 years ago - 1 dependent repositories - 49 downloads last month - 0 stars on GitHub - 1 maintainer
seq-dove 0.4.4
Set of tools for downstream vcf analysis
24 versions - Latest release: over 4 years ago - 1 dependent repositories - 310 downloads last month - 1 maintainer
gene-normalizer 0.9.0
VICC normalization routines for genes
60 versions - Latest release: 17 days ago - 4 dependent packages - 6 dependent repositories - 2.79 thousand downloads last month - 2 stars on GitHub - 3 maintainers
j11hail 99.2.58
Scalable library for exploring and analyzing genomic data.
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 189 downloads last month - 999 stars on GitHub - 2 maintainers
cpg-hail 0.2.90
Scalable library for exploring and analyzing genomic data.
6 versions - Latest release: about 3 years ago - 1 dependent repositories - 196 downloads last month - 999 stars on GitHub - 1 maintainer
Top 2.4% on pypi.org
hail 0.2.134
Scalable library for exploring and analyzing genomic data.
156 versions - Latest release: about 1 month ago - 10 dependent packages - 43 dependent repositories - 27.6 thousand downloads last month - 979 stars on GitHub - 2 maintainers
mutalyzer-algebra 1.5.2
A Boolean Algebra for Genetic Variants
21 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 764 downloads last month - 10 stars on GitHub - 2 maintainers
bamnostic 1.1.10
Pure Python, OS-agnostic Binary Alignment Map (BAM) random access and parsing tool
54 versions - Latest release: almost 2 years ago - 3 dependent packages - 1 dependent repositories - 1.45 thousand downloads last month - 97 stars on GitHub - 1 maintainer
cai 1.0.3
Python implementation of codon adaptation index
7 versions - Latest release: over 6 years ago - 1 dependent repositories - 244 downloads last month - 37 stars on GitHub - 1 maintainer
pygenomics 0.1.5
A modern genomics library
4 versions - Latest release: about 8 years ago - 3 dependent repositories - 83 downloads last month - 18 stars on GitHub - 2 maintainers
gene-fetchr 1.0.0b0
Search, retrieve, and scrape biological data from annotated genomes or public databases.
1 version - Latest release: over 2 years ago - 60 downloads last month - 1 maintainer
ponytools 0.2.3
Computational tools that you will ride into the FUTURE.
11 versions - Latest release: about 6 years ago - 3 dependent repositories - 235 downloads last month - 2 stars on GitHub - 1 maintainer
mop-bam 0.0.6
Get well-mapped regions from bams
13 versions - Latest release: over 3 years ago - 1 dependent repositories - 235 downloads last month - 22 stars on GitHub - 1 maintainer
pysumstats 0.5.2
Package for working with GWAS summary statistics
20 versions - Latest release: over 4 years ago - 1 dependent repositories - 435 downloads last month - 2 stars on GitHub - 1 maintainer
qtl-power 0.5.0b0
"Power calculations for GWAS study design."
2 versions - Latest release: about 1 month ago - 123 downloads last month - 1 stars on GitHub - 1 maintainer
epigen 0.3.0
A tool for genetic data under epistatic models
1 version - Latest release: over 10 years ago - 2 dependent repositories - 29 downloads last month - 1 stars on GitHub - 1 maintainer
codons 0.0.10
Translates and transcribes an arbitrary genetic sequence, generates FASTA-formatted files, and in...
10 versions - Latest release: about 3 years ago - 230 downloads last month - 0 stars on GitHub - 1 maintainer
genome-to-sqlite 0.1
Import your genome into a SQLite database
1 version - Latest release: over 5 years ago - 1 dependent repositories - 29 downloads last month - 21 stars on GitHub - 1 maintainer
ibd-dendrogram 0.12.4
module that helps to form a dendrogram
9 versions - Latest release: about 1 year ago - 308 downloads last month - 0 stars on GitHub - 1 maintainer
hchacha 1.0.5
Human CHromosome Accession CHAnge - Convert between different human chromosome naming systems (of...
6 versions - Latest release: over 1 year ago - 209 downloads last month - 1 maintainer
checkbed 0.2.8
A class for checking plink bed files
6 versions - Latest release: over 10 years ago - 2 dependent repositories - 128 downloads last month - 1 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
limix 3.0.4
Genetic analysis toolbox using mixed models
90 versions - Latest release: over 5 years ago - 6 dependent repositories - 1.61 thousand downloads last month - 97 stars on GitHub - 2 maintainers
pyplink 1.3.7
Python module to read binary Plink files.
13 versions - Latest release: about 1 year ago - 2 dependent packages - 5 dependent repositories - 1.9 thousand downloads last month - 16 stars on GitHub - 1 maintainer
pybgen 0.7.1
Python module to read BGEN files.
11 versions - Latest release: about 4 years ago - 1 dependent package - 4 dependent repositories - 495 downloads last month - 5 stars on GitHub - 1 maintainer
Top 8.2% on pypi.org
fastlmm 0.6.12
Fast GWAS
60 versions - Latest release: 6 months ago - 1 dependent package - 7 dependent repositories - 1.77 thousand downloads last month - 50 stars on GitHub - 4 maintainers
mutation-motif 2025.1.28
mutation_motif, software for naalyses of point mutations, see https://www.ncbi.nlm.nih.gov/pubmed...
2 versions - Latest release: 3 months ago - 109 downloads last month - 3 stars on GitHub - 1 maintainer
buddysuite 1.4.0
BuddySuite is a collection of command line utilities written in Python for working with biologica...
14 versions - Latest release: over 3 years ago - 1 dependent repositories - 319 downloads last month - 127 stars on GitHub - 1 maintainer
cbgen 1.0.6
Python wrapper around a BGEN library
14 versions - Latest release: 10 months ago - 2 dependent packages - 4 dependent repositories - 4.09 thousand downloads last month - 1 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
cellrank 2.0.7
CellRank: dynamics from multi-view single-cell data
35 versions - Latest release: 12 days ago - 5 dependent packages - 5 dependent repositories - 3.58 thousand downloads last month - 375 stars on GitHub - 3 maintainers
cutevariant 0.4.5 💰
GUI to visualize and process variant data
36 versions - Latest release: about 2 years ago - 1 dependent repositories - 1.21 thousand downloads last month - 106 stars on GitHub - 2 maintainers
genipe 1.5.0
An automatic genome-wide imputation pipeline.
13 versions - Latest release: about 4 years ago - 3 dependent repositories - 306 downloads last month - 31 stars on GitHub - 1 maintainer
gpmap 0.7.0
A Python API for managing genotype-phenotype map data
15 versions - Latest release: over 4 years ago - 7 dependent repositories - 468 downloads last month - 11 stars on GitHub - 3 maintainers
bioprot 0.2.0
A package for DNA, RNA and protein sequence manipulation
1 version - Latest release: 11 months ago - 55 downloads last month - 1 stars on GitHub - 1 maintainer
genrisk 0.3.2
Comprehensive genetic risk assessment
20 versions - Latest release: 8 months ago - 1 dependent repositories - 700 downloads last month - 8 stars on GitHub - 1 maintainer
funpipe 0.1.0
A pipeline for analyzing fungal genomic data
1 version - Latest release: about 6 years ago - 1 dependent repositories - 68 downloads last month - 6 stars on GitHub - 1 maintainer
page-enrichment 0.1.4
Parametric Analysis of Gene Set Enrichment (PAGE).
2 versions - Latest release: almost 4 years ago - 1 dependent repositories - 97 downloads last month - 0 stars on GitHub - 1 maintainer
genbank-download 0.5
a small script to download nucleotide sequences from genbank using an accession number.
1 version - Latest release: over 15 years ago - 2 dependent repositories - 34 downloads last month - 1 maintainer
dendropy-calver 2023.330.2
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, proc...
1 version - Latest release: about 2 years ago - 61 downloads last month - 0 stars on GitHub - 1 maintainer
simulatesv 0.2.0
Simulate structural variations and SNPs with artificial dna sequences
4 versions - Latest release: over 7 years ago - 1 dependent repositories - 78 downloads last month - 1 stars on GitHub - 1 maintainer
kgwas 0.0.4
KGWAS
3 versions - Latest release: 3 months ago - 94 downloads last month - 55 stars on GitHub - 1 maintainer
scarv 0.5
Selective Constraint Against Rare Variants
1 version - Latest release: about 3 years ago - 1 dependent repositories - 25 downloads last month - 0 stars on GitHub - 1 maintainer
biogridpy 0.1.1
Python client for the BioGRID REST API webservice
2 versions - Latest release: over 8 years ago - 1 dependent repositories - 54 downloads last month - 1 stars on GitHub - 1 maintainer
vencode 1.2.0
Package to get VEnCodes as in Macedo and Gontijo, 2019
18 versions - Latest release: over 4 years ago - 1 dependent repositories - 464 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
elucidatacmappy 3.3.4
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute...
1 version - Latest release: over 2 years ago - 1 dependent package - 166 downloads last month - 130 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
cmappy 4.0.1
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute...
36 versions - Latest release: about 6 years ago - 2 dependent packages - 1 dependent repositories - 2.98 thousand downloads last month - 130 stars on GitHub - 2 maintainers
mitopipeline 1.1.post8
Mitochondrial Genome Pipeline
16 versions - Latest release: almost 6 years ago - 1 dependent repositories - 346 downloads last month - 4 stars on GitHub - 1 maintainer
ezancestry 0.1.0
Easily predict and visualize genetic ancestry. Evaluate custom ancestry-informative SNP sets.
8 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 478 downloads last month - 65 stars on GitHub - 1 maintainer
al-dente-fasta 0.1.0
Tool to analyze quality control of fastq files
1 version - Latest release: 19 days ago
pytoxo 1.2
A Python tool to calculate penetrance tables for high-order epistasis models
3 versions - Latest release: about 3 years ago - 1 dependent repositories - 116 downloads last month - 2 stars on GitHub - 1 maintainer
geonomics 1.4.7
A package for landscape genomic simulation
74 versions - Latest release: about 2 months ago - 7 dependent repositories - 1.83 thousand downloads last month - 9 stars on GitHub - 1 maintainer
pyflagstats 0.1.4
Efficient subroutines for computing summary statistics for the SAM FLAG field
5 versions - Latest release: over 5 years ago - 1 dependent repositories - 98 downloads last month - 15 stars on GitHub - 1 maintainer
breedgym 0.0.2a0
Suite of Gymnasium environments for optimizing breeding programs
2 versions - Latest release: 11 months ago - 81 downloads last month - 1 stars on GitHub - 1 maintainer
variant-extractor 5.0.0
Deterministic and standard extractor of indels, SNVs and structural variants (SVs) from VCF files.
11 versions - Latest release: 24 days ago - 1 dependent package - 251 downloads last month - 7 stars on GitHub - 1 maintainer