pypi.org "genetics" keyword
View the packages on the pypi.org package registry that are tagged with the "genetics" keyword.
datasnakes 0.1.1a1
This package helps in the analysis of orthologous genes.2 versions - Latest release: almost 8 years ago - 1 dependent repositories - 13 downloads last month - 28 stars on GitHub - 1 maintainer
genotations 0.1.7
Genotations - python library to work with genomes and primers16 versions - Latest release: about 2 years ago - 28 downloads last month - 3 stars on GitHub - 1 maintainer
cai 1.0.3
Python implementation of codon adaptation index7 versions - Latest release: almost 7 years ago - 1 dependent repositories - 203 downloads last month - 37 stars on GitHub - 1 maintainer
bamnostic 1.1.10
Pure Python, OS-agnostic Binary Alignment Map (BAM) random access and parsing tool55 versions - Latest release: over 2 years ago - 3 dependent packages - 1 dependent repositories - 1.02 thousand downloads last month - 98 stars on GitHub - 1 maintainer
prstools 0.0.12
Convenient and powerfull Polygenic Risk Score creation.8 versions - Latest release: about 1 month ago - 92 downloads last month - 1 maintainer
Top 1.7% on pypi.org
30 versions - Latest release: 3 months ago - 33 dependent packages - 109 dependent repositories - 21.6 thousand downloads last month - 202 stars on GitHub - 3 maintainers
dendropy 5.0.8
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, proc...30 versions - Latest release: 3 months ago - 33 dependent packages - 109 dependent repositories - 21.6 thousand downloads last month - 202 stars on GitHub - 3 maintainers
mitopipeline 1.1.post8
Mitochondrial Genome Pipeline16 versions - Latest release: about 6 years ago - 1 dependent repositories - 28 downloads last month - 4 stars on GitHub - 1 maintainer
easyae-samuel.revolinski 0.0.0
easy way for non-linear dimensionality increase or reduction1 version - Latest release: over 6 years ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
moose-classifier 0.14
Alignment based taxonomic classifier9 versions - Latest release: 11 days ago - 1 dependent repositories - 190 downloads last month - 0 stars on GitHub - 1 maintainer
Top 2.1% on pypi.org
61 versions - Latest release: 4 months ago - 16 dependent packages - 83 dependent repositories - 12.6 thousand downloads last month - 197 stars on GitHub - 2 maintainers
msprime 1.3.4
Simulate genealogical trees and genomic sequence data using population genetic models61 versions - Latest release: 4 months ago - 16 dependent packages - 83 dependent repositories - 12.6 thousand downloads last month - 197 stars on GitHub - 2 maintainers
biodumpy 0.1.6
A Comprehensive Biological Data Downloader.6 versions - Latest release: 3 months ago - 78 downloads last month - 0 stars on GitHub - 1 maintainer
cutevariant 0.4.5 💰
GUI to visualize and process variant data36 versions - Latest release: over 2 years ago - 1 dependent repositories - 79 downloads last month - 107 stars on GitHub - 2 maintainers
gene-normalizer 0.10.3
VICC normalization routines for genes64 versions - Latest release: 16 days ago - 4 dependent packages - 6 dependent repositories - 3.76 thousand downloads last month - 2 stars on GitHub - 3 maintainers
cpg-hail 0.2.90
Scalable library for exploring and analyzing genomic data.6 versions - Latest release: over 3 years ago - 1 dependent repositories - 25 downloads last month - 1,026 stars on GitHub - 1 maintainer
chromax 0.0.4a0
Breeding simulator based on JAX4 versions - Latest release: over 1 year ago - 1 dependent repositories - 21 downloads last month - 8 stars on GitHub - 1 maintainer
grstools 0.4.0
Tools to manipulate genetic risk scores.3 versions - Latest release: almost 7 years ago - 1 dependent repositories - 14 downloads last month - 4 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
35 versions - Latest release: 5 months ago - 5 dependent packages - 5 dependent repositories - 2.91 thousand downloads last month - 393 stars on GitHub - 3 maintainers
cellrank 2.0.7
CellRank: dynamics from multi-view single-cell data35 versions - Latest release: 5 months ago - 5 dependent packages - 5 dependent repositories - 2.91 thousand downloads last month - 393 stars on GitHub - 3 maintainers
j11hail 99.2.58
Scalable library for exploring and analyzing genomic data.4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 16 downloads last month - 1,026 stars on GitHub - 2 maintainers
Top 2.4% on pypi.org
157 versions - Latest release: 2 months ago - 10 dependent packages - 43 dependent repositories - 25.4 thousand downloads last month - 979 stars on GitHub - 2 maintainers
hail 0.2.135
Scalable library for exploring and analyzing genomic data.157 versions - Latest release: 2 months ago - 10 dependent packages - 43 dependent repositories - 25.4 thousand downloads last month - 979 stars on GitHub - 2 maintainers
bingenetic 2.6
BinGenetic is a lightweight Python library that enables seamless conversion between binary data a...8 versions - Latest release: 5 months ago - 1 dependent repositories - 29 downloads last month - 2 stars on GitHub - 1 maintainer
doublehelix-microarray-templates 0.0.1a1
This repository contains the templates for microarray file generator1 version - Latest release: about 1 year ago - 11 downloads last month - 0 stars on GitHub - 1 maintainer
fastlmmclib 0.0.7
Fast GWAS C library11 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 1.22 thousand downloads last month - 0 stars on GitHub - 1 maintainer
gnuhealth-genetics 5.0.0
Core genetics package for the GNU Health HIS30 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 608 downloads last month - 1 maintainer
tcga 0.0.22
Computational biology & bioinformatics utils20 versions - Latest release: over 4 years ago - 1 dependent repositories - 39 downloads last month - 3 stars on GitHub - 1 maintainer
orthoevol 0.9.0a2
This package aids in the analysis of orthologous genes.1 version - Latest release: almost 8 years ago - 1 dependent repositories - 9 downloads last month - 28 stars on GitHub - 2 maintainers
warpedlmm 0.21
Warped linear mixed model7 versions - Latest release: over 10 years ago - 1 dependent repositories - 4 downloads last month - 1 maintainer
checkbed 0.2.8
A class for checking plink bed files6 versions - Latest release: almost 11 years ago - 2 dependent repositories - 19 downloads last month - 1 stars on GitHub - 1 maintainer
genetictabler 2.0.3
A time table scheduler using Genetic algorithm(s).12 versions - Latest release: over 2 years ago - 1 dependent repositories - 29 downloads last month - 3 stars on GitHub - 2 maintainers
stirplate 1.4.0
Stirplate Data Uploader5 versions - Latest release: about 9 years ago - 2 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
biogridpy 0.1.1
Python client for the BioGRID REST API webservice2 versions - Latest release: almost 9 years ago - 1 dependent repositories - 27 downloads last month - 1 stars on GitHub - 1 maintainer
pygenclean 1.8.3
Automated data clean up pipeline for genetic data6 versions - Latest release: over 8 years ago - 1 dependent repositories - 15 downloads last month - 3 stars on GitHub - 1 maintainer
igwas 0.1.0
Add your description here1 version - Latest release: 11 months ago - 17 downloads last month - 6 stars on GitHub - 1 maintainer
pysumstats 0.5.2
Package for working with GWAS summary statistics20 versions - Latest release: over 4 years ago - 1 dependent repositories - 32 downloads last month - 3 stars on GitHub - 1 maintainer
ibdcluster 1.2.9
A CLI tool to help identify ibd sharing within networks across a locus of interest at biobank sca...7 versions - Latest release: over 2 years ago - 16 downloads last month - 0 stars on GitHub - 1 maintainer
snipar 0.0.22
Library and command line scripts for inferring identity-by-descent (IBD) segments shared between ...17 versions - Latest release: 5 months ago - 1 dependent repositories - 666 downloads last month - 34 stars on GitHub - 1 maintainer
genrisk 0.3.2
Comprehensive genetic risk assessment20 versions - Latest release: about 1 year ago - 1 dependent repositories - 46 downloads last month - 8 stars on GitHub - 1 maintainer
vcfio 1.2.0
A simple and efficient VCF manipulation package.13 versions - Latest release: about 1 month ago - 1 dependent repositories - 642 downloads last month - 9 stars on GitHub - 1 maintainer
picus 0.0.5
Pointed Interpretation of Clinical Variant Significance5 versions - Latest release: almost 5 years ago - 1 dependent repositories - 9 downloads last month - 0 stars on GitHub - 1 maintainer
kgwas 0.0.4
KGWAS3 versions - Latest release: 8 months ago - 18 downloads last month - 72 stars on GitHub - 1 maintainer
pydigree 1.0.1
A package for operations on pedigree and genotype data3 versions - Latest release: almost 8 years ago - 1 dependent repositories - 10 downloads last month - 21 stars on GitHub - 1 maintainer
gwip 1.0.0
An automatic genome-wide imputation pipeline.1 version - Latest release: over 10 years ago - 2 dependent repositories - 10 downloads last month - 30 stars on GitHub - 1 maintainer
egrm 0.1
Expected Genetic Relationship Matrix1 version - Latest release: almost 4 years ago - 1 dependent repositories - 11 downloads last month - 8 stars on GitHub - 1 maintainer
brioche-enrichment 0.1.2a0
Bayesian tests for set enrichment.1 version - Latest release: about 2 years ago - 12 downloads last month - 1 stars on GitHub - 1 maintainer
fwdpy11 0.24.5
Forward-time population genetic simulation in Python113 versions - Latest release: 5 months ago - 1 dependent repositories - 581 downloads last month - 31 stars on GitHub - 1 maintainer
hlmm 1.3.0a1
Functions for fitting heteroskedastic linear (mixed) models to genetic data2 versions - Latest release: almost 7 years ago - 1 dependent repositories - 18 downloads last month - 18 stars on GitHub - 1 maintainer
openoligo 0.1.7
An open-source platform for programmatically interacting with and managing Nucleic acid sequences...8 versions - Latest release: about 2 years ago - 15 downloads last month - 2 stars on GitHub - 1 maintainer
plynk 0.1.2
Easy command over the PLINK software directly from Python3 versions - Latest release: about 1 year ago - 18 downloads last month - 0 stars on gitlab.com - 1 maintainer
tnatlas 0.0.4
Find transposon integrations in reads and align them to genomes.2 versions - Latest release: 4 months ago - 12 downloads last month - 1 maintainer
epistasis 0.7.5
A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.17 versions - Latest release: about 4 years ago - 3 dependent repositories - 37 downloads last month - 35 stars on GitHub - 3 maintainers
Top 4.8% on pypi.org
59 versions - Latest release: 4 months ago - 7 dependent packages - 22 dependent repositories - 4.35 thousand downloads last month - 88 stars on GitHub - 1 maintainer
pandas-plink 2.3.2
Read PLINK files into Pandas data frames59 versions - Latest release: 4 months ago - 7 dependent packages - 22 dependent repositories - 4.35 thousand downloads last month - 88 stars on GitHub - 1 maintainer
vcfsynonymous 0.2.0
Detect synonymous genetic variants in VCF18 versions - Latest release: over 4 years ago - 1 dependent repositories - 20 downloads last month - 1 stars on GitHub - 1 maintainer
ponytools 0.2.3
Computational tools that you will ride into the FUTURE.11 versions - Latest release: over 6 years ago - 3 dependent repositories - 12 downloads last month - 2 stars on GitHub - 1 maintainer
sisrs 0.1.0
Site Identification from Short Read Sequences.1 version - Latest release: over 7 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 1 maintainer
gepyto 0.10.1
Utilities and tools to interface with genomic databases and to facilitate common bioinformatics t...3 versions - Latest release: almost 10 years ago - 3 dependent repositories - 316 downloads last month - 7 stars on GitHub - 1 maintainer
pygenomics 0.1.5
A modern genomics library4 versions - Latest release: over 8 years ago - 3 dependent repositories - 14 downloads last month - 18 stars on GitHub - 2 maintainers
variant-extractor 5.0.0
Deterministic and standard extractor of indels, SNVs and structural variants (SVs) from VCF files.11 versions - Latest release: 5 months ago - 1 dependent package - 153 downloads last month - 7 stars on GitHub - 1 maintainer
drive-ibd 3.0.1
Python CLI using graph theory to identify networks of individuals who share IBD segments overlapp...53 versions - Latest release: 3 months ago - 288 downloads last month - 0 stars on GitHub - 2 maintainers
preko 0.3.1
PreKO: Precise KO system7 versions - Latest release: 3 months ago - 28 downloads last month - 1 maintainer
codons 0.0.10
Translates and transcribes an arbitrary genetic sequence, generates FASTA-formatted files, and in...10 versions - Latest release: over 3 years ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
lzgraphs 1.1.1
An Implementation of LZ76 Based Graphs for Repertoire Representation and Analysis12 versions - Latest release: 6 months ago - 9 downloads last month - 5 stars on GitHub - 1 maintainer
landerslabutils 0.0.3
Landers Lab utilities for ALS compute project3 versions - Latest release: about 1 year ago - 11 downloads last month - 0 stars on GitHub - 2 maintainers
ezancestry 0.1.0
Easily predict and visualize genetic ancestry. Evaluate custom ancestry-informative SNP sets.8 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 120 downloads last month - 65 stars on GitHub - 1 maintainer
gene-fetchr 1.0.0b0
Search, retrieve, and scrape biological data from annotated genomes or public databases.1 version - Latest release: almost 3 years ago - 8 downloads last month - 1 maintainer
bio-aid 0.3.1
Genetic Analysis Tools22 versions - Latest release: almost 2 years ago - 40 downloads last month - 1 maintainer
bedms 0.2.0
BEDMess attribute standardizer for metadata attribute standardization2 versions - Latest release: 9 months ago - 114 downloads last month - 3 stars on GitHub - 2 maintainers
autopvs1-batch 2.0
A tool for batch run autoPVS11 version - Latest release: over 3 years ago - 1 dependent repositories - 22 downloads last month - 35 stars on GitHub - 1 maintainer
sigmap 1.1.2
SigmaP: Python package for predicting sigma70 promoter in Escherichia coli K-124 versions - Latest release: 8 months ago - 19 downloads last month - 0 stars on GitHub - 1 maintainer
locuspocus 1.1.0
Genetic coordinates made easy!7 versions - Latest release: over 5 years ago - 4 dependent repositories - 6 downloads last month - 10 stars on GitHub - 1 maintainer
sbsgenerator 1.0.5
Blazingly fast SBS matrix generator library7 versions - Latest release: over 1 year ago - 277 downloads last month - 0 stars on GitHub - 1 maintainer
mop-bam 0.0.6
Get well-mapped regions from bams13 versions - Latest release: about 4 years ago - 1 dependent repositories - 48 downloads last month - 21 stars on GitHub - 1 maintainer
doublehelix 1.0.0a7
Genomic data manipulation tool7 versions - Latest release: 11 months ago - 28 downloads last month - 2 stars on GitHub - 1 maintainer
genome-to-sqlite 0.1
Import your genome into a SQLite database1 version - Latest release: almost 6 years ago - 1 dependent repositories - 10 downloads last month - 23 stars on GitHub - 1 maintainer
mutalyzer-algebra 1.5.2
A Boolean Algebra for Genetic Variants21 versions - Latest release: 8 months ago - 2 dependent packages - 1 dependent repositories - 767 downloads last month - 11 stars on GitHub - 2 maintainers
epigen 0.3.0
A tool for genetic data under epistatic models1 version - Latest release: over 10 years ago - 2 dependent repositories - 6 downloads last month - 1 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
10 versions - Latest release: 5 months ago - 2 dependent packages - 5 dependent repositories - 611 downloads last month - 263 stars on GitHub - 1 maintainer
sgkit 0.10.0
Statistical genetics toolkit10 versions - Latest release: 5 months ago - 2 dependent packages - 5 dependent repositories - 611 downloads last month - 263 stars on GitHub - 1 maintainer
hchacha 1.0.5
Human CHromosome Accession CHAnge - Convert between different human chromosome naming systems (of...6 versions - Latest release: about 2 years ago - 33 downloads last month - 1 maintainer
genoml2 1.5.4
GenoML is an automated machine learning tool that optimizes basic machine learning pipelines for ...12 versions - Latest release: 3 months ago - 1 dependent repositories - 40 downloads last month - 33 stars on GitHub - 2 maintainers
genegist 0.1.5
Create summararies of groups of genes.6 versions - Latest release: over 1 year ago - 17 downloads last month - 1 stars on GitHub - 1 maintainer
trifusion 1.0.2
Streamlining phylogenomic data gathering, processing and visualization35 versions - Latest release: almost 7 years ago - 1 dependent repositories - 31 downloads last month - 88 stars on GitHub - 1 maintainer
rrat 0.6
Ribosomal RNA Allele Tree6 versions - Latest release: over 7 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
limix-plot 0.1.2
Plotting library for genetics.14 versions - Latest release: over 6 years ago - 1 dependent repositories - 230 downloads last month - 1 stars on GitHub - 1 maintainer
easyae 0.0.0
easy way for non-linear dimensionality increase or reduction1 version - Latest release: over 6 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
seq-pigeon 0.4.3
Pipeline tool for NGS data17 versions - Latest release: almost 5 years ago - 1 dependent repositories - 13 downloads last month - 963 stars on GitHub - 1 maintainer
jupyter-locuszoom 0.1.1.dev0 💰
Jupyter Widget for LocusZoom2 versions - Latest release: about 2 years ago - 27 downloads last month - 5 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
90 versions - Latest release: almost 6 years ago - 6 dependent repositories - 848 downloads last month - 105 stars on GitHub - 2 maintainers
limix 3.0.4
Genetic analysis toolbox using mixed models90 versions - Latest release: almost 6 years ago - 6 dependent repositories - 848 downloads last month - 105 stars on GitHub - 2 maintainers
qtl-power 0.5.0b0
"Power calculations for GWAS study design."2 versions - Latest release: 6 months ago - 12 downloads last month - 1 stars on GitHub - 1 maintainer
geneparse 0.8.2
A suite of parse for genotype formats.17 versions - Latest release: over 2 years ago - 3 dependent repositories - 122 downloads last month - 5 stars on GitHub - 1 maintainer
seq-dove 0.4.4
Set of tools for downstream vcf analysis24 versions - Latest release: almost 5 years ago - 1 dependent repositories - 65 downloads last month - 1 maintainer
rnacounter 1.5.2
Estimate abundances of genomic features from read densities14 versions - Latest release: over 10 years ago - 2 dependent repositories - 6 downloads last month - 1 stars on GitHub - 2 maintainers
cbgen 1.0.6
Python wrapper around a BGEN library14 versions - Latest release: about 1 year ago - 2 dependent packages - 4 dependent repositories - 3.21 thousand downloads last month - 1 stars on GitHub - 1 maintainer
gpmap 0.7.0
A Python API for managing genotype-phenotype map data15 versions - Latest release: about 5 years ago - 7 dependent repositories - 222 downloads last month - 11 stars on GitHub - 3 maintainers
gnomad-db 0.1.4
This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. ...13 versions - Latest release: almost 2 years ago - 1 dependent repositories - 109 downloads last month - 47 stars on GitHub - 1 maintainer
pybgen 0.7.1
Python module to read BGEN files.11 versions - Latest release: over 4 years ago - 1 dependent package - 4 dependent repositories - 195 downloads last month - 5 stars on GitHub - 1 maintainer
ibd-dendrogram 0.12.4
module that helps to form a dendrogram9 versions - Latest release: over 1 year ago - 21 downloads last month - 0 stars on GitHub - 1 maintainer
scarv 0.5
Selective Constraint Against Rare Variants1 version - Latest release: over 3 years ago - 1 dependent repositories - 7 downloads last month - 0 stars on GitHub - 1 maintainer
scbamtools 0.8.3
High performance Cython + Python tools to process BAM files with tags as they arise in single-cel...7 versions - Latest release: 5 months ago - 16 downloads last month - 2 stars on GitHub - 1 maintainer
Top 8.2% on pypi.org
60 versions - Latest release: 10 months ago - 1 dependent package - 7 dependent repositories - 1.48 thousand downloads last month - 52 stars on GitHub - 4 maintainers
fastlmm 0.6.12
Fast GWAS60 versions - Latest release: 10 months ago - 1 dependent package - 7 dependent repositories - 1.48 thousand downloads last month - 52 stars on GitHub - 4 maintainers
Top 8.8% on pypi.org
36 versions - Latest release: over 6 years ago - 2 dependent packages - 1 dependent repositories - 1.91 thousand downloads last month - 130 stars on GitHub - 2 maintainers
cmappy 4.0.1
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute...36 versions - Latest release: over 6 years ago - 2 dependent packages - 1 dependent repositories - 1.91 thousand downloads last month - 130 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
1 version - Latest release: almost 3 years ago - 1 dependent package - 108 downloads last month - 130 stars on GitHub - 1 maintainer
elucidatacmappy 3.3.4
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute...1 version - Latest release: almost 3 years ago - 1 dependent package - 108 downloads last month - 130 stars on GitHub - 1 maintainer
leapdna 0.1.0
A Python 3.9 implementation of the leapdna toolkit1 version - Latest release: over 4 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
76
genomics
43
python
31
biology
17
gwas
15
vcf
12
dna
9
variant
9
genome
7
statistics
7
evolution
7
plink
6
sequencing
6
phylogenetics
6
machine-learning
6
analysis
6
pipeline
4
data
4
gene
4
hail
4
blast
4
data-science
4
genotype
4
ncbi
4
science
4
coalescent
3
software
3
chromosomes
3
python3
3
genetic
3
health
3
dimensionality-reduction
3
format
3
sequence
3
nonlinear
3
linear
3
simulation
3
rna
3
microarray
3
population genetics
3
wgs
3
pandas
3
DNA
3
ai
3
generation
3
next
3
population-genetics
3
orthologues
3
fasta
3
relatedness
3
genes
3
alignment
3
protein
3
biothings
2
Connectivity
2
file-manipulation
2
gctx
2
gct
2
VCF
2
variant-prioritization
2
model
2
snps
2
ancestry
2
binary
2
open-source
2
reader
2
gnomad
2
project
2
risk
2
neural-networks
2
metadata
2
genotype-phenotype-maps
2
genomic-intervals
2
Breeding
2
bioinformatics-pipeline
2
epistasis
2
genome-editing
2
genetic-analysis
2
CRISPR
2
multi-trait-analysis
2
IBD
2
grp
2
Institute
2
variant-analysis
2
snv
2
Broad
2
GWAS
2
CMap
2
indel
2
Map
2
human
2
computational
2
gnuhealth
2
eHealth
2
HIS
2
varfish
2
variant-filtration
2
mixed
2
population-genomics
2
MLMs
2