python 46 json 19 pdf 19 split 17 diff 12 cli 11 git 11 csv 11 yaml 11 pandas 8 join 8 data 8 convert 7 python3 6 configuration 6 config 6 dictionary 5 extract 5 filter 5 command-line 5 library 5 tool 5 pickle 5 generator 5 html 4 deep-learning 4 arff 4 gct 4 report 4 watermark 4 update 4 sql 4 image 4 xlsx 4 machine-learning 4 schema 4 generate 4 validate 4 validation 4 dict 4 tsv 4 transforming-files 4 DataFrame 4 import 4 transcription 4 tabular-data 4 stata 4 salmon 4 parquet 4 msgpack 4 kallisto 4 hdf5 4 gene-expression 4 graphics 3 PDF 3 concat 3 upsert 3 xls 3 dataframe 3 automation 3 requirements 3 pytorch 3 database 3 office 3 json-schema 3 jsonschema 3 object 3 files 3 builder 3 draft 7 3 command-line-tool 3 linux 3 macos 3 patch 3 toml 3 xml 3 windows 3 text 3 sort 3 docx 3 rna-seq 3 combine 3 remove 3 export 3 search 3 video 3 query 2 quick 2 insertion 2 basic 2 array 2 bubble 2 heap 2 annotation 2 annotations 2 rebase 2 series 2 tools 2 microarray-data 2 biology 2