pypi.org "multiple-sequence-alignment" keyword
evodiff 1.1.2
Python package for generation of protein sequences and evolutionary alignments via discrete diffu...17 versions - Latest release: 3 months ago - 299 downloads last month - 666 stars on GitHub - 3 maintainers
sequoya 0.9.0
Solving Multiple Sequence Alignments with Python1 version - Latest release: almost 7 years ago - 1 dependent repositories - 12 downloads last month - 18 stars on GitHub - 1 maintainer
hladownload 0.0.5
Python command line program and module for retrieving HLA alleles, frequencies and eplets.7 versions - Latest release: over 4 years ago - 1 dependent repositories - 24 downloads last month - 4 stars on GitHub - 1 maintainer
sato 0.1.7
Python package that generates consensus sequence from the forward and reverse sequences, performs...9 versions - Latest release: almost 2 years ago - 57 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
17 versions - Latest release: 5 months ago - 3 dependent packages - 4 dependent repositories - 5.67 thousand downloads last month - 21 stars on GitHub - 2 maintainers
pyspoa 0.3.2
Python bindings to spoa17 versions - Latest release: 5 months ago - 3 dependent packages - 4 dependent repositories - 5.67 thousand downloads last month - 21 stars on GitHub - 2 maintainers
pfamserver 0.0.15
A python service to query the PFAM database through a JSON api.15 versions - Latest release: almost 10 years ago - 2 dependent repositories - 3 stars on GitHub
pymsaviz 0.5.0
MSA visualization python package for sequence analysis9 versions - Latest release: over 1 year ago - 2 dependent packages - 9.89 thousand downloads last month - 151 stars on GitHub - 1 maintainer
bioviper 0.2.1
Enhancements to Biopython for working with biological data6 versions - Latest release: about 2 years ago - 42 downloads last month - 5 stars on GitHub - 1 maintainer
babappalign 1.3.5
Embedding-first deep learning multiple sequence alignment engine with affine-gap DP9 versions - Latest release: 16 days ago - 398 downloads last month - 2 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
7 versions - Latest release: about 1 month ago - 1 dependent repositories - 8.32 thousand downloads last month - 2,653 stars on GitHub - 4 maintainers
colabfold 1.6.1
Making protein folding accessible to all. Predict proteins structures both in google colab and on...7 versions - Latest release: about 1 month ago - 1 dependent repositories - 8.32 thousand downloads last month - 2,653 stars on GitHub - 4 maintainers
albion-similog 0.3.7
Compute a consensus dataseries with FAMSA algorithm.12 versions - Latest release: almost 4 years ago - 136 downloads last month - 153 stars on GitHub - 1 maintainer
reveal 0.2.2
Graph based multi genome aligner2 versions - Latest release: over 6 years ago - 2 dependent repositories - 95 downloads last month - 44 stars on GitHub - 1 maintainer
neffy 0.1.1
A Python interface of NEFFy C++ tool: NEFF Calculator and MSA File Converter2 versions - Latest release: about 1 year ago - 48 downloads last month - 11 stars on GitHub - 1 maintainer
dmpfold 2.0
Protein structure prediction with the DMPfold2 method2 versions - Latest release: about 4 years ago - 1 dependent repositories - 23 downloads last month - 43 stars on GitHub - 1 maintainer
pyabpoa 1.5.6
pyabpoa: SIMD-based partial order alignment using adaptive band27 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 3.04 thousand downloads last month - 135 stars on GitHub - 1 maintainer
pyfamsa 0.6.2
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...16 versions - Latest release: 4 months ago - 3 dependent packages - 5.69 thousand downloads last month - 36 stars on GitHub - 1 maintainer
pytrimal 0.8.5
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.23 versions - Latest release: 5 months ago - 1 dependent repositories - 1.18 thousand downloads last month - 27 stars on GitHub - 1 maintainer
appraise 1.2.4
Scripts and functions needed for for APPARISE.6 versions - Latest release: about 3 years ago - 1 dependent repositories - 120 downloads last month - 2,217 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
9
alignment
7
python
4
protein-structure
4
msa
3
genomics
3
structure-prediction
2
protein
2
deep-learning
2
python-library
2
consensus-sequence
2
sequence
2
simd
2
pfam
2
sequence-alignment
2
conversion-tool
1
reveal
1
effective-sequences
1
neff
1
python-interface
1
graph
1
gfa
1
genome
1
assembly
1
sequence-similarity
1
proteomics
1
longest-common-subsequence
1
python-module
1
cython-wrapper
1
alignment-trimming
1
trimming
1
python-bindings
1
cython-library
1
MSA
1
partial-order-alignment
1
long-reads
1
gfa-format
1
consensus-sequences
1
banded-dp
1
alignment-graph
1
partial-order-graph-alignment
1
protein-structure-prediction
1
end-to-end
1
learning
1
deep
1
prediction
1
structure
1
parser
1
mhc
1
hla
1
frequency
1
epitopes
1
epitope
1
download
1
dna
1
command-line
1
alleles
1
allele-frequencies
1
sequence-alignments
1
optimization
1
metaheuristics
1
protein-sequences
1
generative-model
1
discrete-diffusion
1
guide-tree
1
esm
1
protein-alignment
1
biological-data-analysis
1
visualization
1
sequence-analysis
1
matplotlib
1
proteins
1
protein-sequence-analysis
1
pdb
1
poa
1
nanopore
1
sequence-cleaner
1
phylogenetic-analysis
1
mrbayes
1
fasttree
1
phylogenetics
1
consensus
1