Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "multiple-sequence-alignment" keyword
pytrimal 0.7.0
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.16 versions - Latest release: 10 months ago - 1 dependent repositories - 1.81 thousand downloads last month - 16 stars on GitHub - 1 maintainer
pyfamsa 0.4.0
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...8 versions - Latest release: 5 days ago - 2.44 thousand downloads last month - 21 stars on GitHub - 2 maintainers
evodiff 1.1.0
Python package for generation of protein sequences and evolutionary alignments via discrete diffu...15 versions - Latest release: 8 months ago - 208 downloads last month - 402 stars on GitHub - 2 maintainers
sequoya 0.9.0
Solving Multiple Sequence Alignments with Python1 version - Latest release: almost 5 years ago - 1 dependent repositories - 9 downloads last month - 17 stars on GitHub - 2 maintainers
albion-similog 0.3.7
Compute a consensus dataseries with FAMSA algorithm.12 versions - Latest release: almost 2 years ago - 98 downloads last month - 126 stars on GitHub - 1 maintainer
reveal 0.2.2
Graph based multi genome aligner2 versions - Latest release: over 4 years ago - 2 dependent repositories - 46 downloads last month - 43 stars on GitHub - 2 maintainers
hladownload 0.0.5
Python command line program and module for retrieving HLA alleles, frequencies and eplets.7 versions - Latest release: over 2 years ago - 1 dependent repositories - 19 downloads last month - 3 stars on GitHub - 1 maintainer
sato 0.1.7
Python package that generates consensus sequence from the forward and reverse sequences, performs...9 versions - Latest release: 11 days ago - 66 downloads last month - 0 stars on GitHub - 2 maintainers
Top 8.5% on pypi.org
14 versions - Latest release: 7 months ago - 2 dependent packages - 4 dependent repositories - 1.44 thousand downloads last month - 12 stars on GitHub - 4 maintainers
pyspoa 0.2.1
Python bindings to spoa14 versions - Latest release: 7 months ago - 2 dependent packages - 4 dependent repositories - 1.44 thousand downloads last month - 12 stars on GitHub - 4 maintainers
pymsaviz 0.4.2
MSA visualization python package for sequence analysis8 versions - Latest release: 8 months ago - 396 downloads last month - 57 stars on GitHub - 1 maintainer
pyabpoa 1.5.1
pyabpoa: SIMD-based partial order alignment using adaptive band22 versions - Latest release: 4 months ago - 1 dependent repositories - 415 downloads last month - 105 stars on GitHub - 1 maintainer
bioviper 0.2.1
Enhancements to Biopython for working with biological data6 versions - Latest release: 20 days ago - 51 downloads last month - 5 stars on GitHub - 2 maintainers
pfamserver 0.0.15 removed
A python service to query the PFAM database through a JSON api.15 versions - Latest release: about 8 years ago - 2 dependent repositories - 3 stars on GitHub
dmpfold 2.0
Protein structure prediction with the DMPfold2 method2 versions - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 43 stars on GitHub - 2 maintainers
Related Keywords
alignment
7
bioinformatics
6
python
4
genomics
3
protein-structure
2
msa
2
sequence-alignment
2
consensus-sequence
2
protein
2
simd
2
python-library
2
pfam
2
sequence
2
sequence-analysis
1
visualization
1
matplotlib
1
partial-order-graph-alignment
1
poa
1
alignment-graph
1
nanopore
1
sequence-cleaner
1
phylogenetic-analysis
1
mrbayes
1
fasttree
1
phylogenetics
1
consensus
1
python-module
1
parser
1
banded-dp
1
consensus-sequences
1
gfa-format
1
long-reads
1
partial-order-alignment
1
biological-data-analysis
1
pdb
1
protein-sequence-analysis
1
proteins
1
structure
1
prediction
1
deep
1
learning
1
end-to-end
1
deep-learning
1
protein-structure-prediction
1
proteomics
1
longest-common-subsequence
1
guide-tree
1
sequence-alignments
1
optimization
1
metaheuristics
1
protein-sequences
1
generative-model
1
discrete-diffusion
1
python-bindings
1
cython-library
1
MSA
1
python-interface
1
cython-wrapper
1
alignment-trimming
1
trimming
1
mhc
1
hla
1
frequency
1
epitopes
1
epitope
1
download
1
dna
1
command-line
1
alleles
1
allele-frequencies
1
reveal
1
graph
1
gfa
1
genome
1
assembly
1
sequence-similarity
1