pypi.org "phage" keyword
View the packages on the pypi.org package registry that are tagged with the "phage" keyword.
codoff 1.2.1
Program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, p...5 versions - Latest release: about 2 months ago - 39 downloads last month - 13 stars on GitHub - 1 maintainer
zol 1.2.1
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e....2 versions - Latest release: over 2 years ago - 15 downloads last month - 62 stars on GitHub - 1 maintainer
phanotate 1.6.7
A a tool to annotate phage genomes16 versions - Latest release: 9 months ago - 2 dependent repositories - 207 downloads last month - 78 stars on GitHub - 1 maintainer
phippery 1.3.1
Tools for analyzing PhIP-Seq Data.7 versions - Latest release: 10 months ago - 1 dependent repositories - 32 downloads last month - 12 stars on GitHub - 1 maintainer
sphae 1.5.2
Phage workflow16 versions - Latest release: 3 months ago - 67 downloads last month - 23 stars on GitHub - 1 maintainer
checkamg 0.5.0
Automated identification and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory G...10 versions - Latest release: 3 days ago - 251 downloads last month - 0 stars on GitHub - 1 maintainer
sublyme 1.2.1
A SUBLYME pipeline for Uncovering Bacteriophage Lysins in Metagenomic Datasets3 versions - Latest release: 3 days ago - 221 downloads last month - 1 maintainer
phispy 4.2.21
Prophage finder using multiple metrics31 versions - Latest release: over 3 years ago - 1 dependent repositories - 107 downloads last month - 79 stars on GitHub - 1 maintainer
lysis-curve 1.0.1
Lysis curve package9 versions - Latest release: about 4 years ago - 1 dependent repositories - 22 downloads last month - 0 stars on GitHub - 1 maintainer
phigaro 2.4.0
Phigaro is a scalable command-line tool for predicting phages and prophages.34 versions - Latest release: over 1 year ago - 1 dependent repositories - 149 downloads last month - 52 stars on GitHub - 3 maintainers
pyctv-taxonomy 0.25
Download ICTV Virus Classifications as Python Objects1 version - Latest release: over 2 years ago - 6 downloads last month - 2 stars on GitHub - 1 maintainer
spaed 1.0.5
A module for the segmentation of phage endolysin domains based on the PAE matrix from AlphaFold.6 versions - Latest release: about 2 months ago - 40 downloads last month - 3 stars on GitHub - 1 maintainer
plaque-size-tool 1.0.8
Bacteriophage plaque size measurement tool8 versions - Latest release: over 4 years ago - 1 dependent repositories - 12 downloads last month - 14 stars on GitHub - 1 maintainer
phageboost 0.1.7
a Fast Prophage and Phage Predictor5 versions - Latest release: almost 5 years ago - 1 dependent repositories - 57 downloads last month - 37 stars on GitHub - 1 maintainer
phanatic 2.2.4 removed
Python package to run de novo bacteriophage assembly container.5 versions - Latest release: over 1 year ago - 41 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
10
genomics
7
bacteriophage
5
microbiology
4
bacteria
3
prophage
3
genome
3
metagenomics
3
virus
2
python
2
gene-clusters
2
biosynthetic-gene-clusters
2
mobile-genetic-elements
2
bioinformatics-analysis
1
bioinformatics-pipeline
1
bioinformatics-tool
1
biological-data-analysis
1
genomic-data-analysis
1
genomic-regions
1
phages
1
delineation
1
domain
1
protein
1
segmentation
1
viral
1
plaque
1
size
1
machine learning
1
ngs
1
wgs
1
assembly
1
docker
1
sequence
1
sequence-assembler
1
sequence-assembly
1
evolution
1
detection
1
visualization
1
annotate-phage-genomes
1
annotation
1
phippery
1
phipseq
1
modeling
1
phip
1
phage therapy
1
comparative-genomics
1
bgc
1
viromics
1
AMG
1
cell wall depolymerase
1
endolysin
1
lysin
1
horizontal-gene-transfer
1
growth curve
1
lysis
1
graphing
1
plotly
1
codon-usage
1