Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "phylogeny" keyword
krakenplot 0.1.0
Plot the summary output from Kraken.1 version - Latest release: over 5 years ago - 1 dependent repositories - 11 downloads last month - 2 stars on GitHub - 1 maintainer
phylotreelib 1.27.0
Analyze and manipulate phylogenetic trees71 versions - Latest release: 6 months ago - 3 dependent packages - 1 dependent repositories - 816 downloads last month - 10 stars on GitHub - 1 maintainer
suchtree 1.0
A python library for doing fast, thread-safe computations on phylogenetic trees7 versions - Latest release: almost 2 years ago - 1 dependent repositories - 266 downloads last month - 26 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
21 versions - Latest release: 9 days ago - 5 dependent packages - 5 dependent repositories - 2.2 thousand downloads last month - 94 stars on GitHub - 1 maintainer
cogent3 2024.5.7a1
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems ...21 versions - Latest release: 9 days ago - 5 dependent packages - 5 dependent repositories - 2.2 thousand downloads last month - 94 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
20 versions - Latest release: 2 months ago - 6 dependent packages - 18 dependent repositories - 1.66 thousand downloads last month - 159 stars on GitHub - 1 maintainer
toytree 2.0.5
minimalist tree plotting using toyplot20 versions - Latest release: 2 months ago - 6 dependent packages - 18 dependent repositories - 1.66 thousand downloads last month - 159 stars on GitHub - 1 maintainer
sc-supertree 2024.5.6
Spectral Cluster Supertree3 versions - Latest release: 10 days ago - 1 dependent package - 101 downloads last month - 5 stars on GitHub - 1 maintainer
phylotrackpy 0.2.0
A python phylogeny tracking module10 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 2.86 thousand downloads last month - 9 stars on GitHub - 2 maintainers
taxoniumtools 2.0.115
Generate files for taxonium83 versions - Latest release: 4 months ago - 602 downloads last month - 90 stars on GitHub - 1 maintainer
Top 1.6% on pypi.org
30 versions - Latest release: about 1 year ago - 91 dependent packages - 309 dependent repositories - 43.2 thousand downloads last month - 752 stars on GitHub - 1 maintainer
ete3 3.1.3 💰
A Python Environment for (phylogenetic) Tree Exploration30 versions - Latest release: about 1 year ago - 91 dependent packages - 309 dependent repositories - 43.2 thousand downloads last month - 752 stars on GitHub - 1 maintainer
Top 1.7% on pypi.org
24 versions - Latest release: 11 months ago - 33 dependent packages - 109 dependent repositories - 7.14 thousand downloads last month - 3 maintainers
dendropy 4.6.1
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, proc...24 versions - Latest release: 11 months ago - 33 dependent packages - 109 dependent repositories - 7.14 thousand downloads last month - 3 maintainers
bioconvert 1.1.1
convert between bioinformatics formats32 versions - Latest release: 10 months ago - 1 dependent package - 1 dependent repositories - 231 downloads last month - 350 stars on GitHub - 1 maintainer
alfpy 1.0.6
Alignment-free package to compare DNA/RNA/protein sequences (bioinformatics).4 versions - Latest release: about 6 years ago - 2 dependent packages - 1 dependent repositories - 93 downloads last month - 21 stars on GitHub - 1 maintainer
treetop 2024.5.13.dev1
TreeTOP1 version - Latest release: 3 days ago - 0 stars on GitHub - 1 maintainer
pyfilo 0.0.1
Python library for handling bioinformatics data1 version - Latest release: 9 months ago - 9 downloads last month - 1 maintainer
treeprofiler 1.2.0
TreeProfiler is command-line tool for profiling metadata table into phylogenetic tree with descri...3 versions - Latest release: 8 months ago - 33 downloads last month - 24 stars on GitHub - 1 maintainer
dendropy-calver 2023.330.2
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, proc...1 version - Latest release: about 1 year ago - 12 downloads last month - 0 stars on GitHub - 1 maintainer
treedist 1.0.1
Computes measures of (dis)similarity between phylogenetic trees. Provides summaries of shared and...2 versions - Latest release: over 1 year ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitHub - 1 maintainer
viro-seq-utils 1.3.4
Utilities modules for sequences, alignments and phylogeny from Toulouse virology laboratory.3 versions - Latest release: about 3 years ago - 1 dependent repositories - 6 downloads last month - 1 maintainer
tanos 0.0.1b7
TANOS: TAxon jackknife for NOdal Stability. In phylogenetic trees, calculate how resilient nodes ...2 versions - Latest release: over 3 years ago - 1 dependent repositories - 26 downloads last month - 1 stars on GitHub - 1 maintainer
sonicparanoid 2.0.5
SonicParanoid: fast, accurate, and comprehensive orthology inference with machine learning and la...65 versions - Latest release: about 1 month ago - 1 dependent repositories - 895 downloads last month - 4 stars on GitLab.com - 1 maintainer
sequana-laa 0.10.0
Long read amplicon analysis3 versions - Latest release: 12 months ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 1 maintainer
pylotiger 0.1.0
Python Package for Original and Corrected TIGER Rate Calculation2 versions - Latest release: over 2 years ago - 1 dependent repositories - 31 downloads last month - 1 stars on GitHub - 1 maintainer
pyiwe 0.0.7
Python wrapper for TNT (Tree analysis using New Technology) implied weighting with clades support7 versions - Latest release: over 2 years ago - 1 dependent repositories - 23 downloads last month - 2 stars on GitHub - 1 maintainer
protparcon 3.1
ProtParCon - A framework for framework for processing molecular data and identifying parallel and...4 versions - Latest release: about 5 years ago - 1 dependent repositories - 30 downloads last month - 4 stars on GitHub - 1 maintainer
prophyle 0.1.0
ProPhyle metagenomic classifier54 versions - Latest release: about 7 years ago - 1 dependent repositories - 918 downloads last month - 31 stars on GitHub - 1 maintainer
plottree 0.0.2
plottree - A command tool for quickly visualizing phylogenetic tree via a single command in termi...2 versions - Latest release: about 5 years ago - 1 dependent repositories - 83 downloads last month - 4 stars on GitHub - 1 maintainer
phylodeep 0.3.1
Phylodynamic paramater and model inference using pretrained deep neural networks.74 versions - Latest release: over 1 year ago - 1 dependent repositories - 317 downloads last month - 17 stars on GitHub - 2 maintainers
pastml 1.9.43
Ancestral character reconstruction and visualisation for rooted phylogenetic trees.106 versions - Latest release: 3 months ago - 2 dependent repositories - 573 downloads last month - 24 stars on GitHub - 1 maintainer
ncbitaxonomy 3.1.2
The basic NCBI taxonomy functionality from ETE34 versions - Latest release: about 3 years ago - 1 dependent repositories - 46 downloads last month - 1 maintainer
empress 1.2.0
Fast and scalable phylogenetic tree viewer for multi-omic data analysis5 versions - Latest release: almost 3 years ago - 1 dependent repositories - 200 downloads last month - 44 stars on GitHub - 2 maintainers
Top 6.9% on pypi.org
12 versions - Latest release: over 11 years ago - 24 dependent repositories - 197 downloads last month - 86 stars on GitHub - 4 maintainers
cogent 1.5.3
COmparative GENomics Toolkit12 versions - Latest release: over 11 years ago - 24 dependent repositories - 197 downloads last month - 86 stars on GitHub - 4 maintainers
codon 0.0.1
Non-Stationary Codon Model Fitting1 version - Latest release: almost 8 years ago - 2 dependent repositories - 78 downloads last month - 1 maintainer
baltic 0.2.2
Lightweight package for analyzing, manipulating and visualizing annotated phylogenetic trees12 versions - Latest release: 10 months ago - 1 dependent package - 329 downloads last month - 85 stars on GitHub - 2 maintainers
azulejo 0.10.1
tile phylogenetic space with subtrees26 versions - Latest release: over 3 years ago - 1 dependent repositories - 237 downloads last month - 0 stars on GitHub - 1 maintainer
ipyrad 0.1.32 removed
Interactive assembly and analysis of RADseq data sets5 versions - Latest release: over 8 years ago - 2 dependent repositories - 59 stars on GitHub
Top 9.9% on pypi.org
31 versions - Latest release: 12 months ago - 3 dependent repositories - 158 downloads last month - 42 stars on GitHub - 1 maintainer
paleomix 1.3.8
Bioinformatics pipelines for HTS data31 versions - Latest release: 12 months ago - 3 dependent repositories - 158 downloads last month - 42 stars on GitHub - 1 maintainer
alphabetsoup 0.5.3
tile phylogenetic space with subtrees7 versions - Latest release: almost 4 years ago - 43 downloads last month - 0 stars on GitHub - 1 maintainer
phylogeny 0.1.1
An exploration of algorithms for phylogeny reconstruction.10 versions - Latest release: over 5 years ago - 1 dependent repositories - 110 downloads last month - 2 stars on GitHub - 1 maintainer
sumt 3.8.3
Computes consensus trees and other phylogenetic tree summaries52 versions - Latest release: 23 days ago - 1 dependent repositories - 130 downloads last month - 0 stars on GitHub - 1 maintainer
transcriptorthology 3.0.2
Algorithm to address Orthology and Paralogy at the Transcript Level12 versions - Latest release: 6 months ago - 18 downloads last month - 1 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
21
phylogenetics
12
biology
11
tree
9
evolution
9
python
8
genomics
6
visualization
4
tree visualization
3
phylogenomics
3
systematics
3
sequence
3
statistics
3
protein
3
phylogeography
3
population
2
science
2
coalescent
2
data science
2
sequences
2
tree reconstruction
2
FASTA
2
genetics
2
computational-biology
2
supertree
2
phyloinformatics
2
NGS
2
alignment
2
phylogenetic-trees
2
tree comparison
2
visualisation
2
maximum-likelihood
2
evolutionary
2
phylogenies
2
orthology-inference
2
classification
2
taxonomy
2
prophyle
1
simplitigs
1
viruses
1
dendrogram
1
plot
1
phylodynamics
1
molecular epidemiology
1
model selection
1
alternative-splicing
1
evolutionary biology
1
orthology inference
1
Snakemake
1
Sequana
1
Amplicon
1
Variant calling
1
clade-support
1
implied-weighting
1
tnt
1
simulation
1
metagenomics
1
bacteria
1
burrows-wheeler-transform
1
bwt
1
k-mers
1
metagenomic-classification
1
phylogenetic-compression
1
transcripts
1
algorithm
1
isoorthology
1
orthology-paralogy inference
1
alternative splicing
1
clustering
1
inference
1
reconstruction
1
bam
1
hts
1
pipeline
1
rad-seq
1
assembly
1
GFF
1
tree-plot
1
qiime2
1
qiime
1
ordination
1
microbiome
1
biplot
1
parsimony
1
ancestral-character-reconstruction
1
ancestral character reconstruction
1
PASTML
1
deep-learning
1
convolutional networks
1
deep learning
1
phylodeep
1
paramdeep
1
bam2cram
1
conversion
1
bam2sam
1
fastq2fasta
1
bam2bed
1
treeview
1
tree-structure
1
phylogenomic
1