Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "sequence" keyword

Top 7.5% on pypi.org
clique 2.0.0
Manage collections with common numerical component
12 versions - Latest release: almost 4 years ago - 2 dependent packages - 27 dependent repositories - 5.58 thousand downloads last month - 10 stars on GitLab.com - 4 maintainers
Top 8.9% on pypi.org
seqlogo 5.29.9
Python port of the R Bioconductor `seqlogo` package
38 versions - Latest release: 9 days ago - 2 dependent packages - 3 dependent repositories - 495 downloads last month - 25 stars on GitHub - 2 maintainers
Top 8.0% on pypi.org
pathpy 2.2.0
An OpenSource python package for the analysis and visualisation of time series data on complex ne...
3 versions - Latest release: over 4 years ago - 3 dependent repositories - 478 downloads last month - 138 stars on GitHub - 1 maintainer
seqfile 0.2.0
Find the next file in a sequence of files in a thread-safe way.
3 versions - Latest release: about 9 years ago - 13 dependent repositories - 157 downloads last month - 7 stars on GitHub - 2 maintainers
Top 6.2% on pypi.org
console 0.9907
Comprehensive, composable utility library for ANSI terminals. Better, stronger, faster. Tch-tch-...
3 versions - Latest release: about 3 years ago - 2 dependent packages - 42 dependent repositories - 20.8 thousand downloads last month - 33 stars on GitHub - 2 maintainers
Top 5.2% on pypi.org
pyhmmer 0.10.12
Cython bindings and Python interface to HMMER3.
59 versions - Latest release: 17 days ago - 12 dependent packages - 6 dependent repositories - 17 thousand downloads last month - 110 stars on GitHub - 1 maintainer
sequence 0.3.4
A Python module for looping over a sequence of commands with a focus on high configurability and ...
5 versions - Latest release: over 10 years ago - 5 dependent repositories - 9.26 thousand downloads last month - 0 stars on GitHub - 2 maintainers
Top 6.1% on pypi.org
pyani 0.2.12
pyani provides a package and script for calculation of genome-scale average nucleotide identity.
18 versions - Latest release: almost 2 years ago - 1 dependent package - 5 dependent repositories - 702 downloads last month - 180 stars on GitHub - 2 maintainers
Top 3.2% on pypi.org
seqio-nightly 0.0.18.dev20240512
SeqIO: Task-based datasets, preprocessing, and evaluation for sequence models.
904 versions - Latest release: about 2 hours ago - 3 dependent packages - 10 dependent repositories - 465 thousand downloads last month - 526 stars on GitHub - 1 maintainer
pybite 1.4.2
Chunk by chunk iteration made easier
10 versions - Latest release: over 4 years ago - 1 dependent repositories - 73 downloads last month - 1 stars on GitHub - 1 maintainer
stridessequencefinder 0.10
finds sequences [3, 4, 5] in NumPy arrays [1, 2, 3, 4, 5, 1, 2, 3, 4, 5] - result: [2 7]
1 version - Latest release: 8 months ago - 21 downloads last month - 0 stars on GitHub - 2 maintainers
seqm 0.1.0
Utilities for calculating sequence metrics.
4 versions - Latest release: about 3 years ago - 1 dependent repositories - 51 downloads last month - 0 stars on GitHub - 2 maintainers
clipstitcher 0.1.0
A python package for quick cutting video sequences
1 version - Latest release: 2 months ago - 14 downloads last month - 2 maintainers
acris 3.0.4
acris is a python library of programming patterns that we use, at acrisel, in Python projects and...
39 versions - Latest release: over 6 years ago - 1 dependent repositories - 135 downloads last month - 3 stars on GitHub - 1 maintainer
usum 0.1.6
USUM: Plotting sequence similarity using USEARCH & UMAP
6 versions - Latest release: about 4 years ago - 1 dependent repositories - 87 downloads last month - 10 stars on GitHub - 2 maintainers
vcfy 0.0.9
Generate VCF file with random variants from reference genome
9 versions - Latest release: about 3 years ago - 1 dependent repositories - 109 downloads last month - 6 stars on GitHub - 1 maintainer
pyhmmer-sepp 0.3.4
Personal use fork of pyhmmer (Cython bindings and Python interface to HMMER3) for implementing SEPP
3 versions - Latest release: about 3 years ago - 1 dependent repositories - 292 downloads last month - 0 stars on GitHub - 2 maintainers
sndg-bio 0.1.73
My bioinformatic scripts
69 versions - Latest release: almost 2 years ago - 1 dependent repositories - 455 downloads last month - 1 stars on GitHub - 2 maintainers
Top 6.7% on pypi.org
color-matcher 0.5.0
Package enabling color transfer across images
23 versions - Latest release: over 2 years ago - 2 dependent repositories - 43.9 thousand downloads last month - 348 stars on GitHub - 1 maintainer
pytrimal 0.7.0
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.
16 versions - Latest release: 10 months ago - 1 dependent repositories - 1.81 thousand downloads last month - 16 stars on GitHub - 1 maintainer
rrmscorer 1.0.9
RRM-RNA score predictor
5 versions - Latest release: 7 months ago - 26 downloads last month - 2 maintainers
peptides 0.3.2
Physicochemical properties, indices and descriptors for amino-acid sequences.
6 versions - Latest release: about 1 year ago - 1 dependent repositories - 454 downloads last month - 54 stars on GitHub - 2 maintainers
mutalyzer-mutator 0.2.0
Mutalyzer sequence mutator.
5 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 115 downloads last month - 0 stars on GitHub - 2 maintainers
phanatic 2.2.4
Python package to run de novo bacteriophage assembly container.
5 versions - Latest release: 2 days ago - 17 downloads last month - 0 stars on GitHub - 2 maintainers
vireadb 0.0.16
ViReaDB: Viral Read Database
16 versions - Latest release: over 1 year ago - 176 downloads last month - 2 stars on GitHub - 1 maintainer
pytrails 0.0.4
A collection of Bayesian methods for hypothesis comparison on sequential data.
4 versions - Latest release: over 6 years ago - 1 dependent repositories - 8 downloads last month - 1 stars on GitHub - 2 maintainers
protkit 0.3.0
A unified toolkit for structural protein engineering.
8 versions - Latest release: 3 days ago - 189 downloads last month - 28 stars on GitHub - 2 maintainers
pyopal 0.6.0
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.
16 versions - Latest release: 4 days ago - 1 dependent repositories - 3.02 thousand downloads last month - 7 stars on GitHub - 2 maintainers
video-montage 0.1.0
Easily create a video montage (either a sequence or a grid of videos)
4 versions - Latest release: about 1 month ago - 145 downloads last month - 0 stars on GitHub - 2 maintainers
pyfamsa 0.4.0
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
8 versions - Latest release: 6 days ago - 2.44 thousand downloads last month - 21 stars on GitHub - 2 maintainers
pytantan 0.1.0
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and ...
1 version - Latest release: 4 days ago - 0 stars on GitHub - 2 maintainers
scoring-matrices 0.2.0
Dependency free, Cython-compatible scoring matrices to use with biological sequences.
3 versions - Latest release: 6 days ago - 5.6 thousand downloads last month - 2 stars on GitHub - 1 maintainer
fastseq 0.0.3
Efficient implementations of sequence models with fast performance
3 versions - Latest release: over 3 years ago - 1 dependent repositories - 49 downloads last month - 426 stars on GitHub - 1 maintainer
mkdocs-build-plantuml-plugin-ardihikaru 1.9.6
An MkDocs plugin to call plantuml locally or remote (cloned from: https://github.com/christo-ph/m...
6 versions - Latest release: 2 months ago - 50 downloads last month - 4 stars on GitHub - 1 maintainer
bedpy 0.0.5
Making bed files computable
5 versions - Latest release: over 4 years ago - 1 dependent repositories - 57 downloads last month - 0 stars on GitLab.com - 2 maintainers
sshmm 1.0.7
A sequence-structure hidden Markov model for the analysis of RNA-binding protein data.
11 versions - Latest release: almost 6 years ago - 1 dependent repositories - 59 downloads last month - 2 maintainers
gb-io 0.3.3
A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.
9 versions - Latest release: 28 days ago - 1 dependent repositories - 2.08 thousand downloads last month - 12 stars on GitHub - 1 maintainer
lexpr 0.1
A parser for simple logical expressions of identifiers
1 version - Latest release: about 1 year ago - 15 downloads last month - 0 stars on GitHub - 2 maintainers
sequence-model 0.6.0
Python version of the Steckler Sequence model built with landlab
3 versions - Latest release: 5 months ago - 13 downloads last month - 3 stars on GitHub - 2 maintainers
seq-qc 2.0.4
utilities for performing various preprocessing steps on sequencing reads
10 versions - Latest release: over 6 years ago - 2 dependent repositories - 41 downloads last month - 0 stars on GitHub - 2 maintainers
mdiff 0.1.5
Sequence matcher with displacement detection.
11 versions - Latest release: about 2 years ago - 1 dependent repositories - 42 downloads last month - 31 stars on GitHub - 2 maintainers
zignal 0.7.0
Audio signal processing library
7 versions - Latest release: 10 days ago - 2 dependent repositories - 195 downloads last month - 22 stars on GitHub - 2 maintainers
secuenciaalfanumerica 2022.5.28
Convierte de un número o números a un grupo de caracteres y viceversa
6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 21 downloads last month - 0 stars on GitHub - 2 maintainers
fastapy 1.0.3
A lightweight Python module to read and write FASTA sequence records
3 versions - Latest release: about 1 year ago - 69 downloads last month - 3 stars on GitHub - 2 maintainers
sequdas-qc 1.0.1
Sequence Upload and Data Archiving System
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 7 downloads last month - 0 stars on GitHub - 2 maintainers
skidmarks 0.0.6 💰
find runs (non-randomness) in sequences
6 versions - Latest release: over 8 years ago - 2 dependent repositories - 65 downloads last month - 7 stars on GitHub - 2 maintainers
Top 8.7% on pypi.org
pyopa 0.8.4
PyOPA - optimal pairwise sequence alignments
5 versions - Latest release: 10 months ago - 2 dependent packages - 4 dependent repositories - 116 downloads last month - 2 maintainers
eval-jsonpath-elam 0.0.1
Given a json value, this method will generate an eval jsonPath string for Python or dot notation ...
1 version - Latest release: 8 months ago - 3 downloads last month - 1 maintainer
meningotype 0.8.5
In silico serotyping and finetyping (porA and fetA) of Neisseria meningitidis
3 versions - Latest release: almost 3 years ago - 1 dependent repositories - 29 downloads last month - 9 stars on GitHub - 2 maintainers
py100 1.0
VT100 escape sequences wrapper
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 52 downloads last month - 0 stars on GitHub - 2 maintainers
Top 10.0% on pypi.org
pathpy2 2.2.0
An OpenSource python package for the analysis and visualisation of time series data on complex ne...
3 versions - Latest release: over 4 years ago - 1 dependent package - 5 dependent repositories - 89 downloads last month - 138 stars on GitHub - 2 maintainers
gotoh 0.1.4
Sequence Alignment with different penalties for opening gaps and extending them.
3 versions - Latest release: 10 months ago - 5 dependent repositories - 33 downloads last month - 0 stars on GitHub - 2 maintainers
binderspace 1.0.2
a library for finding the space for binding sequences
4 versions - Latest release: about 1 year ago - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 1 maintainer
nlp-toolkit 1.3.2
NLP Toolkit with easy model training and applications
22 versions - Latest release: almost 5 years ago - 1 dependent repositories - 96 downloads last month - 37 stars on GitHub - 2 maintainers
augmentedtree 0.2a0
Easy navigation within nested data of mappings (dict, ...) and sequences (list, ...). Easy access...
8 versions - Latest release: almost 4 years ago - 1 dependent repositories - 39 downloads last month - 1 stars on GitLab.com - 1 maintainer
stream2 0.0.3
A sequence of elements supporting sequential operations.
3 versions - Latest release: about 1 year ago - 36 downloads last month - 0 stars on GitHub - 2 maintainers
Top 10.0% on pypi.org
valerius 0.2.0
Biological sequence analysis tools.
2 versions - Latest release: over 5 years ago - 4 dependent repositories - 454 downloads last month - 2 maintainers
django-generate-series 0.5.0
Use Postgres' generate_series to create sequences with Django's ORM
11 versions - Latest release: over 1 year ago - 1 dependent repositories - 2.7 thousand downloads last month - 20 stars on GitHub - 2 maintainers
predictioner 1.0.0
The module of the program "Predictioner"
1 version - Latest release: about 2 years ago - 1 dependent repositories - 16 downloads last month - 1 maintainer
pyfileseq 1.0.1
File sequence management
1 version - Latest release: over 12 years ago - 2 dependent repositories - 12 downloads last month - 7 stars on GitHub - 2 maintainers
ultrasequence 1.0.4
An extremely fast file sequencing tool.
1 version - Latest release: about 6 years ago - 1 dependent repositories - 17 downloads last month - 14 stars on GitHub - 2 maintainers
mrsd 1.0.0
MR sequence diagram toolkit
4 versions - Latest release: about 1 year ago - 1 dependent repositories - 42 downloads last month - 11 stars on GitHub - 2 maintainers
imagesource 1.1
Image sequence abstraction for OpenCV.
4 versions - Latest release: over 3 years ago - 1 dependent repositories - 38 downloads last month - 1 stars on GitHub - 2 maintainers
somos 0.0.0
A somos sequence generator for Python!
2 versions - Latest release: about 1 year ago - 18 downloads last month - 2 maintainers
Top 2.0% on pypi.org
edlib 1.3.9
Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance.
18 versions - Latest release: over 2 years ago - 20 dependent packages - 61 dependent repositories - 134 thousand downloads last month - 484 stars on GitHub - 1 maintainer
overloaded-iterables 0.7.34
Overloaded version of the built-in python classes: list and set, to include some extra functional...
22 versions - Latest release: about 1 year ago - 1 dependent repositories - 34 downloads last month - 1 stars on GitHub - 2 maintainers
seqp 0.1
Sequence persistence library
1 version - Latest release: almost 4 years ago - 2 dependent repositories - 13 downloads last month - 3 stars on GitHub - 2 maintainers
ccc-calculator 0.1.0
command-line combinatorial calculator
1 version - Latest release: over 4 years ago - 20 downloads last month - 2 stars on GitHub - 2 maintainers
bpsproxy 0.2.1
Blender Power Sequencer proxy generator tool
8 versions - Latest release: about 4 years ago - 35 downloads last month - 26 stars on GitHub - 2 maintainers
pyloadbar 0.2.0
Customizeable loading sequence/progress bar generator, enabling users to customize start/finish m...
17 versions - Latest release: almost 2 years ago - 1 dependent repositories - 236 downloads last month - 1 stars on GitHub - 2 maintainers
kman 0.0.1
K-mer management tools
1 version - Latest release: about 6 years ago - 1 dependent repositories - 4 downloads last month - 0 stars on GitHub - 2 maintainers
seq-conv 1.0.2
Graph convolutional operator that uses a LSTM as a filter
3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 13 downloads last month - 8 stars on GitHub - 2 maintainers
simpleaudioindexer 1.0.0
Indexes audio files and searches for words/phrases or matches regex patterns within them.
2 versions - Latest release: about 7 years ago - 1 dependent repositories - 49 downloads last month - 101 stars on GitHub - 2 maintainers
abcluster 1.1.0
antibody sequence analysis including translation, numbering and clustering
2 versions - Latest release: about 3 years ago - 50 downloads last month - 2 maintainers
hadoop-protoseq 0.0.1
Python library for Hadoop Streaming with support of protobuf sequences
1 version - Latest release: almost 3 years ago - 1 dependent repositories - 17 downloads last month - 1 stars on GitHub - 2 maintainers
sars2seq 0.1.0
Python library and scripts for working with SARS-CoV-2 sequences.
7 versions - Latest release: about 2 years ago - 1 dependent repositories - 23 downloads last month - 2 stars on GitHub - 1 maintainer
group-by-continuous-sequence 0.10
Groups lists/NumPy arrays by continuous sequence
1 version - Latest release: over 1 year ago - 9 downloads last month - 0 stars on GitHub - 1 maintainer
disembl 2.0rc0
A refactoring/reimplementation of DisEMBL
1 version - Latest release: over 7 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 2 maintainers
skipgrammar 0.1.3
A framework for representing sequences as embeddings.
3 versions - Latest release: almost 2 years ago - 30 downloads last month - 0 stars on GitHub - 2 maintainers
discere 0.0.4
Protein Feature Extraction package for Machine Learning
1 version - Latest release: over 4 years ago - 1 dependent repositories - 20 downloads last month - 16 stars on GitHub - 2 maintainers
splearn 0.1a1 💰
splearn: package for signal processing and machine learning with Python.
1 version - Latest release: over 3 years ago - 1 dependent repositories - 30 downloads last month - 53 stars on GitHub - 2 maintainers
alfpy 1.0.6
Alignment-free package to compare DNA/RNA/protein sequences (bioinformatics).
4 versions - Latest release: about 6 years ago - 1 dependent repositories - 93 downloads last month - 21 stars on GitHub - 1 maintainer
crfst 0.2
A multi-purpose sequential tagger wrapped around CRFSuite
1 version - Latest release: over 7 years ago - 10 downloads last month - 2 maintainers
orange3-timeseries 0.6.3 💰
Orange3 add-on for exploring time series and sequential data.
32 versions - Latest release: about 2 months ago - 1 dependent repositories - 3.13 thousand downloads last month - 61 stars on GitHub - 8 maintainers
orange3-timeseries-zh 0.3.4 💰
Orange3 add-on for exploring time series and sequential data.
1 version - Latest release: about 4 years ago - 1 dependent repositories - 20 downloads last month - 61 stars on GitHub - 2 maintainers
bluewhale3-timeseries 0.3.13 💰
用于探索时间序列和顺序数据的蓝鲸插件。
7 versions - Latest release: over 2 years ago - 1 dependent repositories - 81 downloads last month - 61 stars on GitHub - 1 maintainer
korbinian 0.3.4
Bioinformatic sequence analysis of membrane proteins.
2 versions - Latest release: almost 6 years ago - 1 dependent repositories - 22 downloads last month - 2 stars on GitHub - 2 maintainers
sequifier 2.1.0
Train a transformer model with the command line
24 versions - Latest release: 11 days ago - 232 downloads last month - 5 stars on GitHub - 1 maintainer
cbg 0.1.5
Coloured Bloom Graphs - Low memory multicolour de Bruijn graphs for indexing large collections of...
7 versions - Latest release: almost 7 years ago - 58 downloads last month - 122 stars on GitHub - 2 maintainers
fibonacci-omar 0.0.2
Plays around with Fibonacci sequences.
9 versions - Latest release: over 2 years ago - 1 dependent repositories - 21 downloads last month - 2 maintainers
bigsi 0.3.1
BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WG...
3 versions - Latest release: over 5 years ago - 20 downloads last month - 122 stars on GitHub - 2 maintainers
Top 3.6% on pypi.org
pyfastx 2.1.0
pyfastx is a python module for fast random access to sequences from plain and gzipped FASTA/Q file
67 versions - Latest release: 2 months ago - 12 dependent packages - 28 dependent repositories - 16.7 thousand downloads last month - 235 stars on GitHub - 1 maintainer
lazyseq 0.1.1
a lazily evaluated sequence type for Python
2 versions - Latest release: about 10 years ago - 2 dependent repositories - 3 downloads last month - 6 stars on GitHub - 2 maintainers
lpbio 0.1.0a0
lpbio provides scripts and modules for computational biology
1 version - Latest release: over 5 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 2 maintainers
numpatt-sequence 0.0.11
Number patterns in a sequence
7 versions - Latest release: almost 2 years ago - 1 dependent repositories - 58 downloads last month - 2 maintainers
varify 0.8.0
Clinical DNA Sequencing Analysis and Data Discovery
7 versions - Latest release: over 9 years ago - 2 dependent repositories - 74 downloads last month - 24 stars on GitHub - 2 maintainers
cythonsequencefinder 0.10
Module for finding sequences in arrays using Cython and NumPy.
1 version - Latest release: 6 months ago - 63 downloads last month - 1 stars on GitHub - 2 maintainers
seq-experiment 0.1.2
3 versions - Latest release: over 6 years ago - 1 dependent repositories - 13 downloads last month - 2 maintainers
seqanpy 0.2
Fast pairwise sequence alignment using SeqAn
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 11 downloads last month - 13 stars on GitHub - 2 maintainers
arbow 0.6.0
Cultivate your MSA to get better trees
15 versions - Latest release: about 4 years ago - 1 dependent repositories - 150 downloads last month - 1 maintainer
Related Keywords
bioinformatics 52 python 35 alignment 17 protein 14 genomics 13 DNA 11 dna 10 genome 10 list 9 numpy 8 python-library 7 file 7 fasta 7 search 7 analysis 7 terminal 7 biology 7 color 6 escape 6 sequence-analysis 6 machine-learning 6 image 6 pytorch 6 string 5 prediction 5 console 5 ansi 5 nlp 5 graph 5 cython-library 5 time 5 number 5 colour 4 learning 4 HMM 4 python-bindings 4 sequence-alignment 4 assembly 4 array 4 dict 4 generator 4 text 4 sequence analysis 4 data 4 time-series 4 sequencing 4 video 4 design 3 set 3 math 3 ngs 3 utilities 3 vcf 3 format 3 frames 3 matplotlib 3 diagram 3 command-line 3 thread 3 pypi 3 animation 3 record 3 logger 3 library 3 synthetic-biology 3 parser 3 seq 3 motif 3 tuple 3 binary 3 biopython 3 protein-sequences 3 visualization 3 phylogeny 3 timeseries 3 orange 3 modeling 3 forecasting 3 autoregressive 3 time series 3 orange3 add-on 3 ARIMA 3 logo 3 VAR model 3 collection 3 forecast 3 arima 3 histogram 3 batch 3 preprocessing 3 deep 3 matrix 3 patterns 3 dictionary 3 needleman-wunsch 3 fibonacci 3 pfam 3 profile 3 sequences 3 cursor 3