pypi.org "sequence-alignment" keyword
Top 8.2% on pypi.org
5 versions - Latest release: almost 2 years ago - 1 dependent package - 5 dependent repositories - 821 downloads last month - 0 stars on gitlab.ub.uni-bielefeld.de - 1 maintainer
edist 1.2.2
Edit distance implementations in cython5 versions - Latest release: almost 2 years ago - 1 dependent package - 5 dependent repositories - 821 downloads last month - 0 stars on gitlab.ub.uni-bielefeld.de - 1 maintainer
Top 2.0% on pypi.org
19 versions - Latest release: over 4 years ago - 28 dependent packages - 61 dependent repositories - 109 thousand downloads last month - 484 stars on GitHub - 1 maintainer
edlib 1.3.9
Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance.19 versions - Latest release: over 4 years ago - 28 dependent packages - 61 dependent repositories - 109 thousand downloads last month - 484 stars on GitHub - 1 maintainer
Top 7.6% on pypi.org
6 versions - Latest release: almost 4 years ago - 1 dependent package - 2 dependent repositories - 1.11 thousand downloads last month - 369 stars on GitHub - 2 maintainers
bistring 0.5.0
Bidirectionally transformed strings6 versions - Latest release: almost 4 years ago - 1 dependent package - 2 dependent repositories - 1.11 thousand downloads last month - 369 stars on GitHub - 2 maintainers
Top 0.6% on pypi.org
63 versions - Latest release: 4 months ago - 833 dependent packages - 3,405 dependent repositories - 7.16 million downloads last month - 4,919 stars on GitHub - 5 maintainers
biopython 1.86
Freely available tools for computational molecular biology.63 versions - Latest release: 4 months ago - 833 dependent packages - 3,405 dependent repositories - 7.16 million downloads last month - 4,919 stars on GitHub - 5 maintainers
pydownsampler 1.0
A Python package for downsampling sequence alignment files1 version - Latest release: over 5 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 1 maintainer
g2papi 1.0.4
A python client and CLI for easy access to G2P portal APIs5 versions - Latest release: almost 2 years ago - 34 downloads last month - 12 stars on GitHub - 1 maintainer
sequence-align 0.3.0
Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms in Rust wit...5 versions - Latest release: about 1 year ago - 1 dependent package - 3.47 thousand downloads last month - 73 stars on GitHub - 2 maintainers
goombay 0.24.10
Python implementation of several local, global, and multiple sequence alignment algorithms intend...13 versions - Latest release: 3 months ago - 61 downloads last month - 12 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
75 versions - Latest release: 11 days ago - 5 dependent packages - 5 dependent repositories - 8.67 thousand downloads last month - 133 stars on GitHub - 3 maintainers
cogent3 2026.2.28a1
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems ...75 versions - Latest release: 11 days ago - 5 dependent packages - 5 dependent repositories - 8.67 thousand downloads last month - 133 stars on GitHub - 3 maintainers
kalign-python 3.5.1
Python wrapper for the Kalign multiple sequence alignment engine4 versions - Latest release: 12 days ago - 1.06 thousand downloads last month - 154 stars on GitHub - 1 maintainer
whiscy 1.2.0
WHISCY is a software that predicts protein-protein interfaces using conservation and structural i...1 version - Latest release: almost 2 years ago - 7 downloads last month - 4 stars on GitHub - 1 maintainer
affine-gaps 0.2.4
JIT-compiled string edit-distances including Needleman-Wunsch, Smith-Waterman, Wagner-Fisher, and...5 versions - Latest release: 4 months ago - 244 downloads last month - 9 stars on GitHub - 1 maintainer
pyfamsa 0.6.2
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...16 versions - Latest release: 2 months ago - 3 dependent packages - 5.13 thousand downloads last month - 36 stars on GitHub - 1 maintainer
uta-align 0.3.0
C-based sequence alignment for Python21 versions - Latest release: almost 2 years ago - 3 dependent repositories - 529 downloads last month - 6 stars on GitHub - 3 maintainers
polya 1.3.2
PolyA is a sequence annotation adjudicator.9 versions - Latest release: almost 3 years ago - 1 dependent repositories - 110 downloads last month - 8 stars on GitHub - 2 maintainers
seqanpy 0.2
Fast pairwise sequence alignment using SeqAn1 version - Latest release: over 8 years ago - 1 dependent repositories - 14 downloads last month - 13 stars on GitHub - 1 maintainer
ramplot 1.0.4
A brief description of your package.5 versions - Latest release: over 1 year ago - 104 downloads last month - 4,286 stars on GitHub - 1 maintainer
datasnakes 0.1.1a1
This package helps in the analysis of orthologous genes.2 versions - Latest release: over 8 years ago - 1 dependent repositories - 38 downloads last month - 28 stars on GitHub - 1 maintainer
sigalign 0.3.1
SigAlign's language binding for python4 versions - Latest release: over 1 year ago - 84 downloads last month - 27 stars on GitHub - 1 maintainer
Top 2.1% on pypi.org
31 versions - Latest release: 9 months ago - 27 dependent packages - 49 dependent repositories - 9.58 thousand downloads last month - 2,042 stars on GitHub - 1 maintainer
mappy 2.30
Minimap2 python binding31 versions - Latest release: 9 months ago - 27 dependent packages - 49 dependent repositories - 9.58 thousand downloads last month - 2,042 stars on GitHub - 1 maintainer
minimappers2 0.1.7
A Python wrapper for minimap2-rs5 versions - Latest release: about 1 year ago - 58 downloads last month - 101 stars on GitHub - 1 maintainer
pyprot 0.1-alpha
Python Proteins1 version - Latest release: almost 9 years ago - 1 dependent repositories - 10 downloads last month - 9 stars on GitHub - 1 maintainer
biopython-mcp 0.1.8
Model Context Protocol server providing BioPython library capabilities for biological sequence an...6 versions - Latest release: 2 months ago - 244 downloads last month - 1 maintainer
samsum 0.1.4
A light-weight python package for summarizing sequence coverage from SAM and BAM files6 versions - Latest release: about 5 years ago - 1 dependent repositories - 196 downloads last month - 7 stars on GitHub - 1 maintainer
trviz 1.2.0
A python library for decomposing and visualizing tandem repeat sequences9 versions - Latest release: over 2 years ago - 438 downloads last month - 10 stars on GitHub - 1 maintainer
gasal2-py 1.0.1
Python bindings for GASAL2 (GPU-accelerated pairwise alignment).2 versions - Latest release: 5 months ago - 3 downloads last month - 0 stars on GitHub - 1 maintainer
apobec 0.6
scripts for mutations counting in deep sequencing data6 versions - Latest release: almost 4 years ago - 1 dependent repositories - 87 downloads last month - 2 stars on GitHub - 1 maintainer
pymsa 0.8.1
Scoring Multiple Sequence Alignments with Python5 versions - Latest release: about 6 years ago - 1 dependent repositories - 151 downloads last month - 23 stars on GitHub - 1 maintainer
plotnineseqsuite 1.2.1
A Python package for visualizing sequence data using ggplot2 style10 versions - Latest release: 3 months ago - 1 dependent repositories - 76 downloads last month - 16 stars on GitHub - 1 maintainer
pymsaviz 0.5.0
MSA visualization python package for sequence analysis9 versions - Latest release: over 1 year ago - 2 dependent packages - 7.08 thousand downloads last month - 151 stars on GitHub - 1 maintainer
pyopal 0.7.3
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.21 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 5.05 thousand downloads last month - 10 stars on GitHub - 1 maintainer
plastburstalign 0.9.1
A Python tool to extract and align genes, introns, and intergenic spacers across hundreds of plas...1 version - Latest release: over 1 year ago - 14 downloads last month - 0 stars on GitHub - 1 maintainer
filtersam 0.0.11
('Tools to filter sam o bam files by percent identity or percent of matched sequence',)11 versions - Latest release: over 3 years ago - 1 dependent repositories - 52 downloads last month - 6 stars on GitHub - 1 maintainer
pytransaln 0.2.2
Translation-guided nucleotide alignment for coding sequences4 versions - Latest release: 4 months ago - 37 downloads last month - 0 stars on GitHub - 1 maintainer
pairwise-sequence-alignment 1.0.3
Global and local pairwise alignments between nucleotide/protein sequences.4 versions - Latest release: about 1 year ago - 76 downloads last month - 14 stars on GitHub - 1 maintainer
mah51-biopython 1.1
Freely available tools for computational molecular biology.2 versions - Latest release: almost 4 years ago - 1 dependent repositories - 9 downloads last month - 4,305 stars on GitHub - 1 maintainer
orthoevol 1.0.0b2
This package aids in the analysis of orthologous genes.2 versions - Latest release: 3 months ago - 1 dependent repositories - 140 downloads last month - 28 stars on GitHub - 2 maintainers
miga 1.0.0
Python package to optimize mutual information between two multiple sequence alignment.1 version - Latest release: over 7 years ago - 1 dependent repositories - 14 downloads last month - 8 stars on GitHub - 1 maintainer
ont-mappy 2.28
Minimap2 python binding1 version - Latest release: over 1 year ago - 1.78 thousand downloads last month - 2,042 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
29
python
16
genomics
15
alignment
9
phylogenetics
7
protein
7
biopython
6
needleman-wunsch
6
protein-structure
5
smith-waterman
5
sequence
4
biology
4
sequence alignment
4
spliced-alignment
3
data-science
3
dna
3
visualization
3
levenshtein-distance
3
rust
2
distance
2
ngs
2
pairwise-alignment
2
pairwise
2
python3
2
python-library
2
python-bindings
2
multiple-sequence-alignment
2
cython-library
2
evolution
2
msa
2
MSA
2
sequence-analysis
2
fasta
2
GPU
2
cuda
2
c-plus-plus
2
blast
2
biosql
2
orthology-inference
2
pbs
2
qsub
2
ftp
2
genetics
2
proteins
2
ncbi
2
sge
2
orthology
2
hirschberg
2
orthologues
2
shell
2
bash
2
orthologs
2
vntr
1
tandem-repeats
1
Bioinformatics researchers
1
CUDA
1
str
1
protein-analysis
1
model-context-protocol
1
mcp
1
substitutions
1
structure-prediction
1
score-matrix
1
Structural biologists
1
profiling
1
Computational biology tools
1
Protein data visualization
1
amino-acids
1
longread
1
ffi
1
mapping
1
minimap2
1
Molecular modeling software
1
algorithm
1
next-generation-sequencing
1
flatfile
1
MAFFT
1
genome-analysis
1
genome-annotation
1
organelle-assembly
1
plastid
1
computational-biology
1
samtools
1
nucleotide
1
pairwise alignment
1
needle
1
water
1
emboss
1
global-alignment
1
local-alignment
1
nucleotide-sequence
1
protein-sequence
1
science
1
psychiatry
1
mutual information
1
genetic algorithm
1
cython
1
gpgpu
1
mutual-information
1
gasal2
1