Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "sequence-alignment" keyword
pyopal 0.6.0
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.16 versions - Latest release: 4 days ago - 1 dependent repositories - 3.02 thousand downloads last month - 7 stars on GitHub - 2 maintainers
polya 1.3.2
PolyA is a sequence annotation adjudicator.9 versions - Latest release: about 1 year ago - 1 dependent repositories - 100 downloads last month - 7 stars on GitHub - 4 maintainers
Top 2.1% on pypi.org
29 versions - Latest release: about 2 months ago - 22 dependent packages - 49 dependent repositories - 4.87 thousand downloads last month - 1,691 stars on GitHub - 1 maintainer
mappy 2.28
Minimap2 python binding29 versions - Latest release: about 2 months ago - 22 dependent packages - 49 dependent repositories - 4.87 thousand downloads last month - 1,691 stars on GitHub - 1 maintainer
pyfamsa 0.4.0
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...8 versions - Latest release: 6 days ago - 2.44 thousand downloads last month - 21 stars on GitHub - 2 maintainers
plotnineseqsuite 1.1.0
A Python package for visualizing sequence data using ggplot2 style5 versions - Latest release: 2 months ago - 1 dependent repositories - 31 downloads last month - 5 stars on GitHub - 2 maintainers
Top 0.6% on pypi.org
60 versions - Latest release: 4 months ago - 637 dependent packages - 3,405 dependent repositories - 832 thousand downloads last month - 3,908 stars on GitHub - 5 maintainers
biopython 1.83
Freely available tools for computational molecular biology.60 versions - Latest release: 4 months ago - 637 dependent packages - 3,405 dependent repositories - 832 thousand downloads last month - 3,908 stars on GitHub - 5 maintainers
mah51-biopython 1.1
Freely available tools for computational molecular biology.2 versions - Latest release: about 2 years ago - 1 dependent repositories - 28 downloads last month - 3,900 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
20 versions - Latest release: 3 months ago - 2 dependent packages - 5 dependent repositories - 1.69 thousand downloads last month - 93 stars on GitHub - 1 maintainer
cogent3 2024.2.5a1
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems ...20 versions - Latest release: 3 months ago - 2 dependent packages - 5 dependent repositories - 1.69 thousand downloads last month - 93 stars on GitHub - 1 maintainer
orthoevol 0.9.0a2
This package aids in the analysis of orthologous genes.1 version - Latest release: over 6 years ago - 1 dependent repositories - 10 downloads last month - 27 stars on GitHub - 4 maintainers
Top 2.0% on pypi.org
18 versions - Latest release: over 2 years ago - 20 dependent packages - 61 dependent repositories - 134 thousand downloads last month - 484 stars on GitHub - 1 maintainer
edlib 1.3.9
Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance.18 versions - Latest release: over 2 years ago - 20 dependent packages - 61 dependent repositories - 134 thousand downloads last month - 484 stars on GitHub - 1 maintainer
sequence-align 0.1.0
Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms in Rust wit...1 version - Latest release: about 1 year ago - 1 dependent package - 1.38 thousand downloads last month - 57 stars on GitHub - 2 maintainers
Top 7.6% on pypi.org
6 versions - Latest release: about 2 years ago - 2 dependent repositories - 2.77 thousand downloads last month - 367 stars on GitHub - 4 maintainers
bistring 0.5.0
Bidirectionally transformed strings6 versions - Latest release: about 2 years ago - 2 dependent repositories - 2.77 thousand downloads last month - 367 stars on GitHub - 4 maintainers
seqanpy 0.2
Fast pairwise sequence alignment using SeqAn1 version - Latest release: almost 7 years ago - 1 dependent repositories - 11 downloads last month - 13 stars on GitHub - 2 maintainers
sigalign 0.2.0
SigAlign's language binding for python2 versions - Latest release: 11 months ago - 51 downloads last month - 10 stars on GitHub - 2 maintainers
datasnakes 0.1.1a1
This package helps in the analysis of orthologous genes.2 versions - Latest release: over 6 years ago - 1 dependent repositories - 11 downloads last month - 27 stars on GitHub - 2 maintainers
samsum 0.1.4
A light-weight python package for summarizing sequence coverage from SAM and BAM files6 versions - Latest release: over 3 years ago - 1 dependent repositories - 202 downloads last month - 4 stars on GitHub - 2 maintainers
pyprot 0.1-alpha
Python Proteins1 version - Latest release: almost 7 years ago - 1 dependent repositories - 9 downloads last month - 8 stars on GitHub - 2 maintainers
filtersam 0.0.11
('Tools to filter sam o bam files by percent identity or percent of matched sequence',)11 versions - Latest release: over 1 year ago - 1 dependent repositories - 73 downloads last month - 2 stars on GitHub - 1 maintainer
pymsaviz 0.4.2
MSA visualization python package for sequence analysis8 versions - Latest release: 8 months ago - 396 downloads last month - 57 stars on GitHub - 1 maintainer
miga 1.0.0
Python package to optimize mutual information between two multiple sequence alignment.1 version - Latest release: over 5 years ago - 1 dependent repositories - 10 downloads last month - 5 stars on GitHub - 2 maintainers
trviz 1.2.0
A python library for decomposing and visualizing tandem repeat sequences9 versions - Latest release: 6 months ago - 75 downloads last month - 6 stars on GitHub - 2 maintainers
uta-align 0.3.0
C-based sequence alignment for Python21 versions - Latest release: about 2 months ago - 3 dependent repositories - 302 downloads last month - 5 stars on GitHub - 4 maintainers
Top 8.2% on pypi.org
5 versions - Latest release: about 2 months ago - 1 dependent package - 5 dependent repositories - 260 downloads last month - 2 maintainers
edist 1.2.2
Edit distance implementations in cython5 versions - Latest release: about 2 months ago - 1 dependent package - 5 dependent repositories - 260 downloads last month - 2 maintainers
minimappers2 0.1.3
A Python wrapper for minimap2-rs4 versions - Latest release: over 1 year ago - 8 downloads last month - 47 stars on GitHub - 1 maintainer
pytransaln 0.2.1
Translation-guided nucleotide alignment for coding sequences3 versions - Latest release: 7 months ago - 9 downloads last month - 0 stars on GitHub - 2 maintainers
pydownsampler 1.0
A Python package for downsampling sequence alignment files1 version - Latest release: almost 4 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 2 maintainers
pymsa 0.8.1
Scoring Multiple Sequence Alignments with Python5 versions - Latest release: over 4 years ago - 1 dependent repositories - 100 downloads last month - 19 stars on GitHub - 2 maintainers
apobec 0.6
scripts for mutations counting in deep sequencing data6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 14 downloads last month - 2 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
20
python
12
genomics
10
alignment
6
phylogenetics
5
sequence
4
biology
4
protein
4
visualization
3
biopython
3
data-science
3
fasta
2
protein-structure
2
bash
2
biosql
2
blast
2
ftp
2
genetics
2
ncbi
2
orthologs
2
orthologues
2
orthology
2
orthology-inference
2
pbs
2
qsub
2
sge
2
shell
2
c-plus-plus
2
msa
2
rust
2
python-library
2
python-bindings
2
spliced-alignment
2
multiple-sequence-alignment
2
needleman-wunsch
2
cython-library
2
pairwise
2
dna
2
next-generation-sequencing
1
mutual-information
1
gpgpu
1
cython
1
ngs
1
genetic algorithm
1
proteins
1
GPU
1
amino-acids
1
cuda
1
sequence alignment
1
mutual information
1
opal
1
sequence-analysis
1
profiling
1
matplotlib
1
score-matrix
1
samtools
1
computational-biology
1
substitutions
1
structure-prediction
1
virology
1
python3
1
ngs-analysis
1
hbv-mutations
1
hbv
1
apobec
1
mutation
1
sumofpairs
1
score
1
gaps
1
entropy
1
longread
1
ffi
1
mapping
1
minimap2
1
algebraic-dynamic-programming
1
tree-edit-distance
1
sequence-edit-distance
1
dynamic-time-warping
1
levenshtein-distance
1
sequences
1
vntr
1
tandem-repeats
1
str
1
algorithm
1
competing-annotations
1
confidence-calculations
1
MSA
1
ggplot2
1
plotnine
1
Bioinformatics tool
1
Sequence logo
1
Sequence alignment
1
signal-processing
1
pycogent
1
phylogenetic-trees
1
parallel
1
non-stationary
1
molecular-evolution
1
maximum-likelihood
1
markov-chain
1