Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "taxonomy" keyword
metaerg 2.5.6
Annotation of genomes and contigs71 versions - Latest release: about 1 month ago - 835 downloads last month - 2 stars on GitHub - 1 maintainer
funid 0.3.20
FunID is now FunVIP41 versions - Latest release: about 17 hours ago - 536 downloads last month - 5 stars on GitHub - 1 maintainer
genmine 1.0.13
GenBank data miner for fungal taxonomists21 versions - Latest release: 2 days ago - 360 downloads last month - 7 stars on GitHub - 1 maintainer
taxpasta 0.6.1
TAXonomic Profile Aggregation and STAndardisation12 versions - Latest release: 8 months ago - 137 downloads last month - 27 stars on GitHub - 3 maintainers
Top 3.4% on pypi.org
27 versions - Latest release: over 1 year ago - 9 dependent packages - 20 dependent repositories - 1.18 thousand downloads last month - 18 stars on GitHub - 7 maintainers
collective.taxonomy 3.0.1
Create, edit and use hierarchical taxonomies in Plone!27 versions - Latest release: over 1 year ago - 9 dependent packages - 20 dependent repositories - 1.18 thousand downloads last month - 18 stars on GitHub - 7 maintainers
Top 6.1% on pypi.org
18 versions - Latest release: almost 2 years ago - 1 dependent package - 5 dependent repositories - 880 downloads last month - 180 stars on GitHub - 1 maintainer
pyani 0.2.12
pyani provides a package and script for calculation of genome-scale average nucleotide identity.18 versions - Latest release: almost 2 years ago - 1 dependent package - 5 dependent repositories - 880 downloads last month - 180 stars on GitHub - 1 maintainer
krakenplot 0.1.0
Plot the summary output from Kraken.1 version - Latest release: over 5 years ago - 1 dependent repositories - 11 downloads last month - 2 stars on GitHub - 1 maintainer
mritaxonomy 1.0.0
MRIGlobal's taxonomy related operators4 versions - Latest release: 2 months ago - 36 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
9 versions - Latest release: over 1 year ago - 1 dependent package - 20 dependent repositories - 1.08 thousand downloads last month - 12 stars on GitHub - 1 maintainer
tdtax 0.1.6
Taxonomy for Time-Domain Astronomy Classes9 versions - Latest release: over 1 year ago - 1 dependent package - 20 dependent repositories - 1.08 thousand downloads last month - 12 stars on GitHub - 1 maintainer
Top 4.9% on pypi.org
13 versions - Latest release: 2 months ago - 3 dependent packages - 24 dependent repositories - 6.24 thousand downloads last month - 101 stars on GitHub - 2 maintainers
pygbif 0.6.4
Python client for GBIF13 versions - Latest release: 2 months ago - 3 dependent packages - 24 dependent repositories - 6.24 thousand downloads last month - 101 stars on GitHub - 2 maintainers
localcosmos-app-kit-taxonomy 0.1.3
Local Cosmos Taxonomy django app3 versions - Latest release: 8 days ago - 1 dependent package - 299 downloads last month - 0 stars on GitHub - 1 maintainer
littletree 0.8.0
Tree library15 versions - Latest release: 2 months ago - 1 dependent package - 55 downloads last month - 1 stars on GitHub - 1 maintainer
senseppi 0.7.1
SENSE-PPI: Sequence-based EvolutioNary ScalE Protein-Protein Interaction prediction17 versions - Latest release: 30 days ago - 183 downloads last month - 1,268 stars on GitHub - 1 maintainer
taxidtools 2.3.0
A Python Toolkit for Taxonomy9 versions - Latest release: 5 days ago - 1 dependent repositories - 218 downloads last month - 0 stars on GitHub - 1 maintainer
abstracttree 0.0.5
Abstract base classes for tree data structures6 versions - Latest release: about 2 months ago - 1 dependent package - 60 downloads last month - 1 stars on GitHub - 1 maintainer
pygnparser 0.0.1
Python client for GNparser1 version - Latest release: about 2 months ago - 38 downloads last month - 0 stars on GitHub - 1 maintainer
gottcha2 2.1.8.55
Genomic Origin Through Taxonomic CHAllenge (GOTTCHA) v21 version - Latest release: 3 months ago - 8 downloads last month - 7 stars on GitHub - 1 maintainer
taxref 0.0.10
A simple taxref toolbox.6 versions - Latest release: 24 days ago - 251 downloads last month - 0 stars on GitHub - 1 maintainer
flattaxdb 0.1.0
Yet another Python library to work with taxonomy databases1 version - Latest release: 11 months ago - 13 downloads last month - 1 maintainer
phylomatcher 0.3.2
A tool for parsing and extracting taxon synonyms.3 versions - Latest release: about 1 year ago - 22 downloads last month - 2 stars on GitHub - 1 maintainer
taxomatcher 0.2 removed
A tool for parsing and extracting taxon synonyms.1 version - Latest release: about 1 year ago - 69 downloads last month - 0 stars on GitHub - 1 maintainer
taxo-matcher 0.1 removed
A tool for parsing and extracting taxon synonyms.1 version - Latest release: about 1 year ago - 77 downloads last month - 0 stars on GitHub - 1 maintainer
pyskani 0.1.1
PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation ...2 versions - Latest release: about 1 year ago - 348 downloads last month - 17 stars on GitHub - 1 maintainer
ntsubtree 1.1
Tree representation for fast queries of the subtree of a taxon in the NCBI taxonomy tree2 versions - Latest release: over 1 year ago - 18 downloads last month - 4 stars on GitHub - 1 maintainer
genomes-attributes-viewer 1.3
Example application of fastsubtrees3 versions - Latest release: over 1 year ago - 20 downloads last month - 4 stars on GitHub - 1 maintainer
ntdownload 1.7.1
Easily updatable local NCBI taxonomy dumps file copy5 versions - Latest release: over 1 year ago - 3 dependent packages - 37 downloads last month - 4 stars on GitHub - 1 maintainer
Top 7.7% on pypi.org
13 versions - Latest release: 11 months ago - 2 dependent packages - 2 dependent repositories - 1.09 thousand downloads last month - 1 maintainer
taksonomia 2023.6.18
Taxonomy (Finnish: taksonomia) of a folder tree, guided by conventions.13 versions - Latest release: 11 months ago - 2 dependent packages - 2 dependent repositories - 1.09 thousand downloads last month - 1 maintainer
taxonomy4good 2.0.0
Sustainability lexicon providing both listed and non-listed taxonomies8 versions - Latest release: 7 months ago - 10 downloads last month - 25 stars on GitHub - 1 maintainer
ubiome 0.6.5
uBiome core taxonomy library7 versions - Latest release: almost 8 years ago - 2 dependent repositories - 31 downloads last month - 66 stars on GitHub - 1 maintainer
ttree 1.0.3
Taxonomy tree data structure implementation.3 versions - Latest release: over 6 years ago - 1 dependent repositories - 29 downloads last month - 1 stars on GitHub - 1 maintainer
taxopedia 1.1.3
Taxonomic trees (cladograms) from Wikipedia-scraped data.8 versions - Latest release: about 3 years ago - 1 dependent repositories - 45 downloads last month - 7 stars on GitHub - 1 maintainer
taxonomy-ranks 0.0.10
To get taxonomy ranks information with ETE3 from NCBI Taxonomy database.10 versions - Latest release: almost 4 years ago - 1 dependent repositories - 31 downloads last month - 9 stars on GitHub - 1 maintainer
taxon_names_resolver 1.0.7
Resolve taxonomic names through Global Names Resolver.8 versions - Latest release: over 7 years ago - 3 dependent repositories - 31 downloads last month - 7 stars on GitHub - 1 maintainer
taxmagick 0.2
Tools for visualizing ncbi taxonomic data2 versions - Latest release: about 6 years ago - 1 dependent repositories - 16 downloads last month - 1 stars on GitHub - 1 maintainer
taxamatcher 1.0.1
Easy to use taxonomy correlator1 version - Latest release: about 5 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
10 versions - Latest release: almost 2 years ago - 2 dependent repositories - 356 downloads last month - 37 stars on GitHub - 1 maintainer
taxadb 0.12.1
locally query the ncbi taxonomy10 versions - Latest release: almost 2 years ago - 2 dependent repositories - 356 downloads last month - 37 stars on GitHub - 1 maintainer
tax2graph 1.0.3
Parse taxonomic data from Catalog Of Life to a graph database.4 versions - Latest release: over 3 years ago - 1 dependent repositories - 22 downloads last month - 4 stars on GitHub - 1 maintainer
tanos 0.0.1b7
TANOS: TAxon jackknife for NOdal Stability. In phylogenetic trees, calculate how resilient nodes ...2 versions - Latest release: over 3 years ago - 1 dependent repositories - 26 downloads last month - 1 stars on GitHub - 1 maintainer
sequana-multitax 0.12.1
A multi-sample and multi-databases taxonomic analysis using Kraken12 versions - Latest release: 6 months ago - 1 dependent repositories - 32 downloads last month - 1 maintainer
sequana-pacbio-qc 1.0.1
QC on various type of pacbio data5 versions - Latest release: 11 months ago - 1 dependent repositories - 15 downloads last month - 139 stars on GitHub - 1 maintainer
Top 5.9% on pypi.org
5 versions - Latest release: about 7 years ago - 9 dependent repositories - 479 downloads last month - 421 stars on GitHub - 3 maintainers
sematch 1.0.4
Semantic similarity framework for knowledge graphs5 versions - Latest release: about 7 years ago - 9 dependent repositories - 479 downloads last month - 421 stars on GitHub - 3 maintainers
redis-taxon 0.3.0
Redis-backed tagged data store6 versions - Latest release: over 11 years ago - 2 dependent repositories - 46 downloads last month - 60 stars on GitHub - 1 maintainer
pytaxa 0.0.6
Taxonomic Classes1 version - Latest release: almost 6 years ago - 1 dependent repositories - 11 downloads last month - 9 stars on GitHub - 1 maintainer
pyphy 1.0.4
A python package to interact with NCBI taxonomy2 versions - Latest release: about 2 years ago - 1 dependent repositories - 24 downloads last month - 1 stars on GitHub - 1 maintainer
products.plonekeywordexplorer 0.5.0
Explore Plone content by keywords/tags2 versions - Latest release: over 13 years ago - 12 downloads last month - 1 maintainer
phylorank 0.1.12
Assigns taxonomic ranks based on evolutionary divergence.25 versions - Latest release: about 2 years ago - 3 dependent repositories - 83 downloads last month - 21 stars on GitHub - 2 maintainers
Top 9.5% on pypi.org
53 versions - Latest release: over 3 years ago - 10 dependent repositories - 571 downloads last month - 43 stars on GitHub - 3 maintainers
paralleldots 3.2.14
Python Wrapper for ParallelDots APIs53 versions - Latest release: over 3 years ago - 10 dependent repositories - 571 downloads last month - 43 stars on GitHub - 3 maintainers
orthoani 0.5.0
An implementation of the OrthoANI algorithm for nucleotide identity measurement.9 versions - Latest release: almost 3 years ago - 1 dependent repositories - 81 downloads last month - 13 stars on GitHub - 1 maintainer
oj_break 0.1.1
A Python wrapper for uses the OJ_Break API2 versions - Latest release: almost 9 years ago - 2 dependent repositories - 12 downloads last month - 1 stars on GitHub - 1 maintainer
ncbi-taxonomist 1.2.1
Toolbox to manage NCBI taxonomical data11 versions - Latest release: over 3 years ago - 1 dependent repositories - 402 downloads last month - 3 stars on GitLab.com - 1 maintainer
ncbitax2lin 2.3.2
A tool that converts NCBI taxonomy dump into lineages11 versions - Latest release: about 2 years ago - 2 dependent repositories - 145 downloads last month - 124 stars on GitHub - 1 maintainer
naturtag 0.7.0
A tool for tagging your iNaturalist photo collection with observation metadata19 versions - Latest release: almost 2 years ago - 1 dependent repositories - 104 downloads last month - 35 stars on GitHub - 1 maintainer
multitax 1.3.1
Python package to obtain, parse and explore biological and custom taxonomies7 versions - Latest release: about 1 year ago - 1 dependent repositories - 36 downloads last month - 32 stars on GitHub - 1 maintainer
lpsn 1.0.0
LPSN-API - Programmatic Access to LPSN3 versions - Latest release: 3 months ago - 1 dependent repositories - 78 downloads last month - 659 stars on GitHub - 1 maintainer
kraken-biom 1.0.1
Create BIOM-format tables from Kraken output.1 version - Latest release: over 7 years ago - 1 dependent repositories - 96 downloads last month - 42 stars on GitHub - 1 maintainer
icb 0.1a3
This library provides a way to parse, manipulate and analyze ICB codes.3 versions - Latest release: over 2 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 1 maintainer
groupdocs-classification-cloud 19.3.0
GroupDocs.Classification Cloud API References1 version - Latest release: about 5 years ago - 1 dependent repositories - 5 downloads last month - 3 stars on GitHub - 1 maintainer
flextaxd 0.1.5
Script that allows the creation of custom kraken databases from various sources (NCBI, QIIME, Can...1 version - Latest release: over 4 years ago - 2 dependent repositories - 16 downloads last month - 60 stars on GitHub - 1 maintainer
fastsubtrees 1.6.1
Tree representation for fast subtree queries11 versions - Latest release: over 1 year ago - 2 dependent packages - 1 dependent repositories - 84 downloads last month - 4 stars on GitHub - 1 maintainer
extaxsi 0.3.9
Extaxsi is a bioinformatic library aimed to elaborate and visualize molecular and taxonomic infor...11 versions - Latest release: over 2 years ago - 1 dependent repositories - 39 downloads last month - 4 stars on GitHub - 5 maintainers
eukulele 2.0.8
A package to make the process of taxonomically classifying microbial eukaryotes easier.11 versions - Latest release: 4 months ago - 1 dependent repositories - 112 downloads last month - 24 stars on GitHub - 1 maintainer
collective.taxonomysupport 1.4.1
Add support for taxonomies to Plone contents as a news tag-like field4 versions - Latest release: almost 8 years ago - 2 dependent repositories - 12 downloads last month - 0 stars on GitHub - 4 maintainers
ccmetagen 1.5.0
Microbiome classification pipeline10 versions - Latest release: about 1 month ago - 1 dependent repositories - 170 downloads last month - 58 stars on GitHub - 3 maintainers
botaxon 0.2
Taxonomic parser for (sub)species botanical names.2 versions - Latest release: about 5 years ago - 37 downloads last month - 0 stars on GitHub - 1 maintainer
taxonomy 0.10.0
Routines for loading, saving, and manipulating taxonomic trees12 versions - Latest release: over 1 year ago - 2 dependent repositories - 863 downloads last month - 32 stars on GitHub - 1 maintainer
pytaxize 0.7.0
Taxonomic toolbelt for Python1 version - Latest release: almost 4 years ago - 1 dependent repositories - 37 downloads last month - 34 stars on GitHub - 1 maintainer
btyper3 3.4.0
In silico taxonomic classification of Bacillus cereus group isolates using assembled genomes7 versions - Latest release: 12 months ago - 42 downloads last month - 16 stars on GitHub - 2 maintainers
Top 8.2% on pypi.org
23 versions - Latest release: 25 days ago - 1 dependent package - 9 dependent repositories - 447 downloads last month - 21 stars on GitHub - 3 maintainers
taxhub 1.14.0
Application web de gestion centralisée des taxons basée sur le référentiel TAXREF23 versions - Latest release: 25 days ago - 1 dependent package - 9 dependent repositories - 447 downloads last month - 21 stars on GitHub - 3 maintainers
rseng 0.0.18 💰
criteria and taxonomy for research software engineering9 versions - Latest release: over 3 years ago - 1 dependent repositories - 25 downloads last month - 10 stars on GitHub - 1 maintainer
ntmirror 1.4.1
Easily updatable local NCBI taxonomy database copy6 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 47 downloads last month - 4 stars on GitHub - 1 maintainer
rse 0.0.48 💰
tools for assessment and categorization of research software39 versions - Latest release: 7 months ago - 1 dependent repositories - 101 downloads last month - 15 stars on GitHub - 1 maintainer
sra-importer 0.0.11
An easy and convenient way to import data from the sra database and creating OTU and Taxonomy tab...11 versions - Latest release: over 1 year ago - 67 downloads last month - 0 stars on GitHub - 1 maintainer
Top 7.4% on pypi.org
48 versions - Latest release: 24 days ago - 2 dependent repositories - 403 downloads last month - 430 stars on GitHub - 3 maintainers
gtdbtk 2.4.0
A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.48 versions - Latest release: 24 days ago - 2 dependent repositories - 403 downloads last month - 430 stars on GitHub - 3 maintainers
clark-biom 1.0.0
Create BIOM-format tables from CLARK abundance tables.1 version - Latest release: about 6 years ago - 1 dependent repositories - 34 downloads last month - 1 stars on GitHub - 1 maintainer
gbif 0.1.0
Basic and experimental Gbif Taxon API library for Python1 version - Latest release: almost 13 years ago - 2 dependent repositories - 12 downloads last month - 4 stars on GitHub - 1 maintainer
aniclustermap 1.3.0
A tool for drawing ANI clustermap between all-vs-all microbial genomes5 versions - Latest release: 6 months ago - 1 dependent repositories - 69 downloads last month - 41 stars on GitHub - 1 maintainer
makura 1.2.0
NCBI Genome downloader4 versions - Latest release: about 1 year ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
pyfastani 0.5.1
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estima...10 versions - Latest release: 3 months ago - 1 dependent repositories - 506 downloads last month - 15 stars on GitHub - 1 maintainer
mkrefs 0.2.0
MkDocs plugin to generate semantic reference Markdown pages2 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 44 downloads last month - 27 stars on GitHub - 1 maintainer
treemaker 1.0.3
A python tool for generating a Newick formatted tree from alist of classifications6 versions - Latest release: over 5 years ago - 3 dependent repositories - 19 downloads last month - 7 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
25
python
23
ncbi
12
tree
12
ncbi-taxonomy
10
phylogenetics
8
classification
7
biodiversity
6
metagenomics
6
genomics
5
subtree
5
average-nucleotide-identity
5
taxonomic-classification
5
subtree-query
5
subtree-extraction
5
api
4
NCBI
4
ani
4
database
3
kraken
3
newick
3
taxa
3
taxon
3
population genetics
3
nomenclature
3
parser
3
species
3
python-library
3
average
3
lineage
3
nucleotide
3
identity
3
taxonomic-classifications
3
plone
3
ecology
2
data
2
trees
2
fungi
2
research software
2
software
2
datastructure
2
hierarchy
2
graphviz
2
mermaid
2
rse
2
python-bindings
2
sequana
2
NGS
2
snakemake
2
metagenomes
2
taxdump
2
gtdb
2
nlp
2
genbank
2
biom-format
2
metagenomic-classification
2
tag
2
BIOM
2
archaea
2
genome
2
visualization
2
taxonomy-assignment
2
web-services
2
API
2
rseng
2
gbif
2
silva
2
greengenes
2
knowledge graph
2
mirror
2
bacteria
2
systematics
2
phylogeny
2
document
1
newick-format
1
cloud
1
iab2
1
documents classification
1
groupdocs cloud
1
groupdocs
1
gics
1
finance
1
icb.definitions
1
icb
1
keycloak
1
microbiology
1
xBio:D
1
python-module
1
orthoani
1
biopython
1
genomic
1
machine-learning
1
deep-learning
1
data-science
1
computer-vision
1
target
1
popularity
1
text
1
phrase
1
visual
1