python 126 directory 50 graph 39 structure 33 cli 33 visualization 33 python3 21 data-structures 19 machine-learning 19 parser 19 json 19 filesystem 18 data 18 tree-structure 18 node 16 taxonomy 14 file 14 search 13 django 13 bioinformatics 13 parse 12 terminal 12 network 12 dict 11 list 11 phylogenetics 11 data structure 11 phylogeny 11 dictionary 11 syntax 11 html 10 parsing 10 dependency 10 generator 10 hierarchy 10 path 9 data-structure 9 trie 9 algorithms 9 algorithm 9 queue 8 recursive 8 folder 8 grammar 8 ascii 8 ast 8 pip 8 command-line 8 newick 8 yaml 8 trees 8 array 7 decision 7 earley 7 lark 7 hash 7 radix 7 tools 7 widget 7 library 7 xml 7 package 7 data structures 7 classification 6 markdown 6 query 6 diff 6 scikit-learn 6 dependencies 6 traverse 6 graphviz 6 matrix 6 bst 6 dag 6 stack 6 svg 6 ncbi-taxonomy 6 phylogenetic 6 print 6 nested 6 parsing-library 6 parsing-engine 6 parser-library 6 lalr 6 cyk 6 abstract 5 project 5 segment 5 subtree 5 science 5 machine 5 linked list 5 subtree-extraction 5 forest 5 genomics 5 machine learning 5 distance 5 pretty-print 5 biology 5 subtree-query 5