Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
Top 2.0% on pypi.org
Top 1.3% downloads on pypi.org
Top 0.6% dependent packages on pypi.org
Top 1.9% dependent repos on pypi.org
Top 3.7% forks on pypi.org
Top 1.4% docker downloads on pypi.org
Top 1.3% downloads on pypi.org
Top 0.6% dependent packages on pypi.org
Top 1.9% dependent repos on pypi.org
Top 3.7% forks on pypi.org
Top 1.4% docker downloads on pypi.org
pypi.org : edlib
Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance.
Registry
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Source
- Documentation
- JSON
purl: pkg:pypi/edlib
Keywords: edit, distance, levenshtein, align, sequence, bioinformatics, alignment-path, c-plus-plus, edit-distance, levehnstein-distance, library, python, sequence-alignment
License: MIT
Latest release: almost 3 years ago
First release: over 7 years ago
Dependent packages: 28
Dependent repositories: 61
Downloads: 135,434 last month
Stars: 484 on GitHub
Forks: 159 on GitHub
Docker dependents: 8
Docker downloads: 2,014
Total Commits: 243
Committers: 14
Average commits per author: 17.357
Development Distribution Score (DDS): 0.193
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: 11 days ago
dark-matter 4.0.81
Python classes and utility scripts for working with genetic sequence data.336 versions - Latest release: about 1 month ago - 9 dependent repositories - 1.22 thousand downloads last month - 15 stars on GitHub - 5 maintainers
Top 6.7% on pypi.org
12 versions - Latest release: about 1 month ago - 1 dependent package - 3 dependent repositories - 435 downloads last month - 511 stars on GitHub - 3 maintainers
sniffles 2.3.3
A fast structural variation caller for long-read sequencing data12 versions - Latest release: about 1 month ago - 1 dependent package - 3 dependent repositories - 435 downloads last month - 511 stars on GitHub - 3 maintainers
wgscovplot 1.0.2
Create interactive comparative sequencing coverage plots from virus sequencing data.8 versions - Latest release: about 1 month ago - 1 dependent repositories - 115 downloads last month - 13 stars on GitHub - 2 maintainers
teklia-nerval 0.3.3rc1
Tool to evaluate NER on noisy text.2 versions - Latest release: about 1 month ago - 1 dependent package - 400 downloads last month - 1 maintainer
crispector2 2.0.9
CRISPECTOR2 - Genome Editing Analysis Tool, with allele extension3 versions - Latest release: about 2 months ago - 117 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
26 versions - Latest release: 3 months ago - 2 dependent repositories - 605 downloads last month - 295 stars on GitHub - 1 maintainer
truvari 4.2.2
Structural variant comparison tool for VCFs26 versions - Latest release: 3 months ago - 2 dependent repositories - 605 downloads last month - 295 stars on GitHub - 1 maintainer
dysgu 1.6.3
Structural variant calling28 versions - Latest release: 3 months ago - 1 dependent repositories - 363 downloads last month - 85 stars on GitHub - 1 maintainer
callingcardstools 1.5.2
A collection of objects and functions to work with calling cards sequencing tools23 versions - Latest release: 3 months ago - 118 downloads last month - 0 stars on GitHub - 1 maintainer
pytorch-cortex 0.0.2
A modular architecture for deep learning systems.2 versions - Latest release: 3 months ago - 42 downloads last month - 1 maintainer
isonform 0.3.4
De novo construction of isoforms from long-read data7 versions - Latest release: 5 months ago - 49 downloads last month - 14 stars on GitHub - 1 maintainer
biobookshelf 0.2.10
a collection of python scripts and functions for exploratory analysis of bioinformatic data in Py...52 versions - Latest release: 5 months ago - 1 dependent repositories - 80 downloads last month - 4 stars on GitHub - 1 maintainer
rrequested-demultiplex 1.2.0
rrequested-demultiplex: A versatile package to preprocess raw basecalled reads with quality and s...1 version - Latest release: 6 months ago - 12 downloads last month - 1 stars on GitHub - 1 maintainer
rrequested-pkg 1.2.0 removed
rrequested-pkg: A versatile package to preprocess raw basecalled reads with quality and size filt...1 version - Latest release: 6 months ago - 1 maintainer
medaka-cpu 1.11.3
Neural network sequence error correction.40 versions - Latest release: 6 months ago - 1 dependent repositories - 767 downloads last month - 385 stars on GitHub - 1 maintainer
parseq-analyze 0.1.1
parseq is a python package for the analysis of parSEQ sequencing data2 versions - Latest release: 6 months ago - 23 downloads last month - 1 stars on GitHub - 1 maintainer
Top 6.0% on pypi.org
86 versions - Latest release: 6 months ago - 3 dependent repositories - 1.51 thousand downloads last month - 385 stars on GitHub - 1 maintainer
medaka 1.11.3
Neural network sequence error correction.86 versions - Latest release: 6 months ago - 3 dependent repositories - 1.51 thousand downloads last month - 385 stars on GitHub - 1 maintainer
gapmm2 23.11.3
gapmm2: gapped alignment using minimap24 versions - Latest release: 7 months ago - 1 dependent repositories - 38 downloads last month - 3 stars on GitHub - 1 maintainer
amptk 1.6.0
AMPtk: amplicon tool kit11 versions - Latest release: 7 months ago - 1 dependent repositories - 116 downloads last month - 35 stars on GitHub - 1 maintainer
Top 6.5% on pypi.org
jupyter-ascending 0.1.27
28 versions - Latest release: 8 months ago - 1 dependent package - 2 dependent repositories - 820 downloads last month - 4 maintainersfbilr 1.2.0
Find barcode in long reads5 versions - Latest release: 9 months ago - 1 dependent repositories - 33 downloads last month - 0 stars on GitHub - 1 maintainer
isoncorrect 0.1.0
De novo error-correction of long-read transcriptome reads10 versions - Latest release: 9 months ago - 1 dependent repositories - 40 downloads last month - 56 stars on GitHub - 1 maintainer
isocomp 0.3.0
4 versions - Latest release: 10 months ago - 32 downloads last month - 1 maintainernanoprep-ffm 0.0.17
A fully-equipped, fast, and memory-efficient pre-processor for ONT transcriptomic data13 versions - Latest release: 11 months ago - 73 downloads last month - 0 stars on GitHub - 1 maintainer
dt4dds 1.0.0
dt4dds is a Python package providing a customizable, digital representation of the widely-used DN...1 version - Latest release: 12 months ago - 13 downloads last month - 3 stars on GitHub - 1 maintainer
auditnlg 0.0.1
Auditing Generative AI Lanugage Modeling for Trustworthiness1 version - Latest release: about 1 year ago - 1 dependent package - 5 dependent repositories - 414 downloads last month - 89 stars on GitHub - 1 maintainer
oireachtas-data 0.1.19
Oireachtas debate data35 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 134 downloads last month - 1 stars on GitHub - 1 maintainer
findpapers 0.6.7 💰
Findpapers is an application that helps researchers who are looking for references for their work.24 versions - Latest release: over 1 year ago - 1 dependent repositories - 353 downloads last month - 179 stars on GitHub - 1 maintainer
readtagger 0.5.25
Tags reads in a BAM file based on other BAM files.77 versions - Latest release: about 4 years ago - 1 dependent repositories - 152 downloads last month - 2 stars on GitHub - 1 maintainer