Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

Top 1.4% on pypi.org
Top 0.3% downloads on pypi.org
Top 0.2% dependent packages on pypi.org
Top 0.2% dependent repos on pypi.org
Top 4.6% forks on pypi.org
Top 0.6% docker downloads on pypi.org

pypi.org : intervaltree

Editable interval tree data structure for Python 2 and 3

Registry - Source - Documentation - JSON
purl: pkg:pypi/intervaltree
Keywords: interval-tree, data-structure, intervals, tree
License: Apache-2.0
Latest release: almost 4 years ago
First release: over 9 years ago
Dependent packages: 120
Dependent repositories: 2,549
Downloads: 880,701 last month
Stars: 605 on GitHub
Forks: 99 on GitHub
Docker dependents: 332
Docker downloads: 27,954,481
Total Commits: 506
Committers: 17
Average commits per author: 29.765
Development Distribution Score (DDS): 0.089
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: 8 days ago

sigprofilertopography 1.0.90
SigProfilerTopography provides topography analyses for substitutions, dinucleotides and indels fo...
267 versions - Latest release: 13 days ago - 1 dependent repositories - 2.38 thousand downloads last month - 15 stars on GitHub - 2 maintainers
oakvar 2.9.127 💰
A genomic variant analysis platform
279 versions - Latest release: 14 days ago - 1 dependent repositories - 1.03 thousand downloads last month - 23 stars on GitHub - 1 maintainer
clinlp 0.7.0
Performant and production-ready NLP pipelines for clinical text written in Dutch
19 versions - Latest release: 15 days ago - 290 downloads last month - 24 stars on GitHub - 1 maintainer
Top 7.9% on pypi.org
scout-browser 4.82.2
Clinical DNA variant visualizer and browser.
135 versions - Latest release: 16 days ago - 1 dependent package - 2 dependent repositories - 1.43 thousand downloads last month - 143 stars on GitHub - 4 maintainers
laboneq 2.30.0
Zurich Instruments LabOne Q software framework for quantum computing control
44 versions - Latest release: 18 days ago - 1 dependent package - 1 dependent repositories - 5.18 thousand downloads last month - 34 stars on GitHub - 2 maintainers
pyranges-plot 0.0.20
'Gene visualization package for dataframe objects generated with PyRanges.'
20 versions - Latest release: 18 days ago - 103 downloads last month - 2 stars on GitHub - 1 maintainer
xcltk 0.3.0
xcltk - Toolkit for XClone
14 versions - Latest release: 20 days ago - 1 dependent repositories - 102 downloads last month - 1 stars on GitHub - 1 maintainer
Top 1.2% on pypi.org
pyre-check 0.9.21
A performant type checker for Python
71 versions - Latest release: 20 days ago - 25 dependent packages - 279 dependent repositories - 74.3 thousand downloads last month - 6,689 stars on GitHub - 13 maintainers
Top 6.0% on pypi.org
malariagen_data 9.0.1
A package for accessing and analysing MalariaGEN data.
98 versions - Latest release: 21 days ago - 4 dependent packages - 4 dependent repositories - 7.08 thousand downloads last month - 13 stars on GitHub - 4 maintainers
lifton 1.0.2
Combining DNA and protein alignments to improve genome annotation with LiftOn
7 versions - Latest release: 22 days ago - 371 downloads last month - 30 stars on GitHub - 1 maintainer
Top 1.2% on pypi.org
ddtrace 2.8.4
Datadog APM client library
478 versions - Latest release: 24 days ago - 39 dependent packages - 343 dependent repositories - 7.24 million downloads last month - 489 stars on GitHub - 4 maintainers
biobit 0.0.2
Rust-powered Python library for biological data analysis
3 versions - Latest release: 25 days ago - 2.7 thousand downloads last month - 1 maintainer
gocli 0.11.6
gocli
56 versions - Latest release: 28 days ago - 1 dependent repositories - 325 downloads last month - 69 stars on GitHub - 3 maintainers
mexca 1.0.4
Emotion expression capture from multiple modalities.
11 versions - Latest release: 30 days ago - 243 downloads last month - 26 stars on GitHub - 1 maintainer
pcpfm 1.0.13
LC-MS metabolomics data processing pipeline
20 versions - Latest release: about 1 month ago - 64 downloads last month - 4 stars on GitHub - 1 maintainer
Top 5.7% on pypi.org
lhotse 1.23.0
Data preparation for speech processing models training.
41 versions - Latest release: about 1 month ago - 5 dependent packages - 3 dependent repositories - 64.6 thousand downloads last month - 874 stars on GitHub - 1 maintainer
medkit-lib 0.15.0
A Python library for a learning health system
18 versions - Latest release: about 1 month ago - 187 downloads last month - 13 stars on GitHub - 2 maintainers
Top 8.6% on pypi.org
hicmatrix 17.2
Helper package which implements HiCMatrix class for HiCExplorer, pyGenomeTracks and scHiCExplorer.
9 versions - Latest release: about 1 month ago - 4 dependent packages - 5 dependent repositories - 1.2 thousand downloads last month - 10 stars on GitHub - 3 maintainers
eth-wake 4.9.0
Wake is a Python-based Solidity development and testing framework with built-in vulnerability det...
17 versions - Latest release: about 1 month ago - 1 dependent package - 1.27 thousand downloads last month - 185 stars on GitHub - 1 maintainer
splat64 0.24.1
A binary splitting tool to assist with decompilation and modding projects
22 versions - Latest release: about 1 month ago - 1.61 thousand downloads last month - 144 stars on GitHub - 1 maintainer
neet-nanopore 1.0.0 removed
Toolkit for the analysis of systematic error patterns in nanopore sequencing data
5 versions - Latest release: about 1 month ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
spladder 3.0.5
Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
21 versions - Latest release: about 1 month ago - 1 dependent repositories - 458 downloads last month - 101 stars on GitHub - 2 maintainers
talisman-ie-datamodel 0.4.1
Talisman-IE Document Model
2 versions - Latest release: about 1 month ago - 90 downloads last month - 1 maintainer
mobgap 0.3.0
A Python implementation of the Mobilise-D algorithm pipeline for gait analysis using IMU worn at ...
3 versions - Latest release: about 1 month ago - 285 downloads last month - 5 stars on GitHub - 1 maintainer
pm4py-pn-unfoldings 1.0.1
Library for Petri net unfoldings based on pm4py
2 versions - Latest release: about 1 month ago - 83 downloads last month - 1 stars on GitHub - 1 maintainer
dolphindb-tools 0.2a1
A tool package based on DolphinDB Python API.
2 versions - Latest release: about 1 month ago - 82 downloads last month - 1 maintainer
phlash 1.0.2
Bayesian inference of population size history from recombining sequence data.
4 versions - Latest release: about 2 months ago - 29 downloads last month - 7 stars on GitHub - 1 maintainer
Top 7.4% on pypi.org
pyre-check-nightly 0.0.101713006759
A performant type checker for Python
869 versions - Latest release: about 2 months ago - 3 dependent repositories - 2.78 thousand downloads last month - 6,689 stars on GitHub - 6 maintainers
lst-pressure 1.7.0
Determine periods of "LST pressure" by querying for intersections between LST/Solar intervals
66 versions - Latest release: about 2 months ago - 134 downloads last month - 0 stars on GitHub - 1 maintainer
Top 0.6% on pypi.org
spyder 5.5.4 💰
The Scientific Python Development Environment
119 versions - Latest release: about 2 months ago - 30 dependent packages - 5,899 dependent repositories - 59.2 thousand downloads last month - 8,023 stars on GitHub - 3 maintainers
fwdpy11 0.22.2
Forward-time population genetic simulation in Python
106 versions - Latest release: about 2 months ago - 1 dependent repositories - 2.45 thousand downloads last month - 27 stars on GitHub - 1 maintainer
Top 5.3% on pypi.org
xml2rfc 3.21.0
xml2rfc generates RFCs and IETF drafts from document source in XML according to the IETF xml2rfc ...
183 versions - Latest release: about 2 months ago - 2 dependent packages - 34 dependent repositories - 4.19 thousand downloads last month - 59 stars on GitHub - 3 maintainers
genomkit 0.2.8
genomkit
6 versions - Latest release: about 2 months ago - 45 downloads last month - 0 stars on GitHub - 1 maintainer
inmantals 1.6.0
Inmanta Language Server
14 versions - Latest release: about 2 months ago - 1 dependent repositories - 71 downloads last month - 2 stars on GitHub - 4 maintainers
Top 2.2% on pypi.org
faust-streaming 0.11.0
Python Stream Processing. A Faust fork
188 versions - Latest release: 2 months ago - 12 dependent packages - 22 dependent repositories - 93.8 thousand downloads last month - 1,438 stars on GitHub - 6 maintainers
Top 8.5% on pypi.org
truvari 4.2.2
Structural variant comparison tool for VCFs
26 versions - Latest release: 2 months ago - 2 dependent repositories - 605 downloads last month - 295 stars on GitHub - 1 maintainer
vembrane 1.0.5
Filter VCF/BCF files with Python expressions.
33 versions - Latest release: 2 months ago - 1 dependent repositories - 175 downloads last month - 56 stars on GitHub - 3 maintainers
Top 2.2% on pypi.org
npe2 0.7.5
napari plugin engine v2
25 versions - Latest release: 2 months ago - 18 dependent packages - 27 dependent repositories - 52.9 thousand downloads last month - 9 stars on GitHub - 5 maintainers
callingcardstools 1.5.2
A collection of objects and functions to work with calling cards sequencing tools
23 versions - Latest release: 2 months ago - 118 downloads last month - 0 stars on GitHub - 1 maintainer
Top 3.8% on pypi.org
s3prl 0.4.15
Self-Supervised Speech Pre-training and Representation Learning Toolkit
25 versions - Latest release: 2 months ago - 1 dependent package - 10 dependent repositories - 5.32 thousand downloads last month - 2,094 stars on GitHub - 1 maintainer
zipline-tej 2.0.0
A Pythonic backtester for trading algorithms
77 versions - Latest release: 3 months ago - 1.36 thousand downloads last month - 1 stars on GitHub - 1 maintainer
npf-renderer 0.12.1
A Python Based Renderer for Tumblr's Neue Post Format (NPF)
6 versions - Latest release: 3 months ago - 1 dependent repositories - 388 downloads last month - 2 stars on GitHub - 1 maintainer
Top 1.5% on pypi.org
petl 1.7.15
A Python package for extracting, transforming and loading tables of data.
90 versions - Latest release: 3 months ago - 14 dependent packages - 302 dependent repositories - 1.6 million downloads last month - 1,205 stars on GitHub - 2 maintainers
Top 2.2% on pypi.org
pm4py 2.7.11
Process mining for Python
189 versions - Latest release: 3 months ago - 20 dependent packages - 93 dependent repositories - 33.9 thousand downloads last month - 662 stars on GitHub - 3 maintainers
bindcompare 1.4.0
A Novel DNA/RNA Binding Integration and Analysis Platform.
9 versions - Latest release: 3 months ago - 67 downloads last month - 1 stars on GitHub - 1 maintainer
google-cloud-documentai-toolbox 0.13.3a0
Document AI Toolbox is an SDK for Python that provides utility functions for managing, manipulati...
26 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 17.9 thousand downloads last month - 28 stars on GitHub - 2 maintainers
rnalib 0.0.3
A python-based transcriptomics library
3 versions - Latest release: 3 months ago - 36 downloads last month - 1 stars on GitHub - 1 maintainer
twm-faust 1.14.3
Python Stream processing.
2 versions - Latest release: 3 months ago - 25 downloads last month - 6,671 stars on GitHub - 1 maintainer
iocsearcher 2.3.0
A library and command line tool for extracting indicators of compromise (IOCs) from security repo...
12 versions - Latest release: 3 months ago - 184 downloads last month - 19 stars on GitHub - 1 maintainer
Top 1.0% on pypi.org
pwntools 4.12.0
Pwntools CTF framework and exploit development library.
113 versions - Latest release: 3 months ago - 21 dependent packages - 221 dependent repositories - 74 thousand downloads last month - 11,486 stars on GitHub - 5 maintainers
str-analysis 1.2.8
Utilities for analyzing short tandem repeats (STRs)
41 versions - Latest release: 4 months ago - 1 dependent repositories - 353 downloads last month - 25 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
indy-plenum 1.13.1
Plenum Byzantine Fault Tolerant Protocol
464 versions - Latest release: 4 months ago - 1 dependent package - 11 dependent repositories - 2.05 thousand downloads last month - 211 stars on GitHub - 5 maintainers
oaemlib 0.2.0
Compute obstruction adaptive elevation masks from CityGML data
3 versions - Latest release: 4 months ago - 28 downloads last month - 1 maintainer
satvis 0.2.4
Satellite LOS visibility calculator
11 versions - Latest release: 4 months ago - 1 dependent repositories - 71 downloads last month - 2 stars on GitHub - 1 maintainer
trajdata 1.4.0
A unified interface to many trajectory forecasting datasets.
18 versions - Latest release: 4 months ago - 1 dependent repositories - 254 downloads last month - 187 stars on GitHub - 1 maintainer
neet-test2 0.0.1 removed
Toolkit for the analysis of systematic error patterns in nanopore sequencing data
1 version - Latest release: 5 months ago - 0 stars on GitHub - 1 maintainer
broken-source 2024.1.15 💰
🚀 Broken Source Software Framework and All Projects in One Place
10 versions - Latest release: 5 months ago - 577 downloads last month - 9 stars on GitHub - 1 maintainer
schickit 0.0.59
a toolkit for processing single cell Hi-C data
55 versions - Latest release: 5 months ago - 290 downloads last month - 1 maintainer
biobookshelf 0.2.10
a collection of python scripts and functions for exploratory analysis of bioinformatic data in Py...
52 versions - Latest release: 5 months ago - 1 dependent repositories - 80 downloads last month - 4 stars on GitHub - 1 maintainer
Top 9.8% on pypi.org
graphtage 0.3.1
A utility to diff tree-like files such as JSON and XML.
15 versions - Latest release: 5 months ago - 1 dependent repositories - 711 downloads last month - 2,325 stars on GitHub - 2 maintainers
duptextfinder 0.3.0
Detect duplicated zones in (clinical) text
4 versions - Latest release: 5 months ago - 1 dependent package - 1 dependent repositories - 429 downloads last month - 1 stars on GitHub - 2 maintainers
pomoxis 0.3.15
Assembly, consensensus, and analysis tools by ONT research.
21 versions - Latest release: 5 months ago - 1 dependent repositories - 89 downloads last month - 86 stars on GitHub - 1 maintainer
advent-of-code-wim 2023.19 💰
Wim's solutions for https://adventofcode.com/
71 versions - Latest release: 5 months ago - 1 dependent repositories - 361 downloads last month - 33 stars on GitHub - 1 maintainer
medaka-cpu 1.11.3
Neural network sequence error correction.
40 versions - Latest release: 6 months ago - 1 dependent repositories - 767 downloads last month - 385 stars on GitHub - 1 maintainer
pyfastner 1.0.10
PyFastNER is the python implementation of FastNER, which is orginally developed using Java. It us...
24 versions - Latest release: 6 months ago - 1 dependent package - 2 dependent repositories - 3.89 thousand downloads last month - 2 stars on GitHub - 2 maintainers
Top 4.9% on pypi.org
gtirb 2.0.0
GrammaTech Intermediate Representation for Binaries
25 versions - Latest release: 6 months ago - 6 dependent packages - 8 dependent repositories - 1.51 thousand downloads last month - 294 stars on GitHub - 1 maintainer
Top 6.0% on pypi.org
medaka 1.11.3
Neural network sequence error correction.
86 versions - Latest release: 6 months ago - 3 dependent repositories - 1.51 thousand downloads last month - 385 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
genmod 3.8.2
Annotate genetic inheritance models in variant files
164 versions - Latest release: 6 months ago - 7 dependent repositories - 609 downloads last month - 67 stars on GitHub - 5 maintainers
govcf 0.9.0
govcf
2 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 49 downloads last month - 69 stars on GitHub - 3 maintainers
Top 8.1% on pypi.org
polyfile 0.5.4
A utility to recursively map the structure of a file.
19 versions - Latest release: 6 months ago - 2 dependent repositories - 968 downloads last month - 321 stars on GitHub - 2 maintainers
woke 3.6.2
Woke is a Python-based development and testing framework for Solidity.
28 versions - Latest release: 6 months ago - 1 dependent repositories - 91 downloads last month - 201 stars on GitHub - 1 maintainer
headergen 1.2.6
HeaderGen: Automated cell header generator
13 versions - Latest release: 6 months ago - 60 downloads last month - 11 stars on GitHub - 1 maintainer
hydra-lsp 0.1.3
Language server for Hydra YAML config files
5 versions - Latest release: 6 months ago - 339 downloads last month - 11 stars on GitHub - 1 maintainer
whisper-pyannote-fusion 0.0.5
Fuse whisper and pyannote results
5 versions - Latest release: 7 months ago - 100 downloads last month - 1 maintainer
strainge 1.3.9
Strain Genome Explorer: a tool suite for tracking and characterizing low-abundance strains.
21 versions - Latest release: 7 months ago - 961 downloads last month - 6,279 stars on GitHub - 1 maintainer
ensembl-rest 0.3.4
An interface to the Ensembl REST APIs, biological data at your fingertips.
23 versions - Latest release: 8 months ago - 1 dependent repositories - 1.08 thousand downloads last month - 11 stars on GitHub - 1 maintainer
Top 1.5% on pypi.org
pyocd 0.36.0
Cortex-M debugger for Python
81 versions - Latest release: 8 months ago - 9 dependent packages - 334 dependent repositories - 259 thousand downloads last month - 1,008 stars on GitHub - 5 maintainers
Top 3.2% on pypi.org
scanorama 1.7.4
Panoramic stitching of heterogeneous single cell transcriptomic data
24 versions - Latest release: 8 months ago - 18 dependent packages - 31 dependent repositories - 7.53 thousand downloads last month - 246 stars on GitHub - 1 maintainer
talisman-dm 0.7.7
Talisman Document Model python implementation
83 versions - Latest release: 8 months ago - 5 dependent packages - 1 dependent repositories - 689 downloads last month - 1 maintainer
vimms 2.1.4
A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics.
12 versions - Latest release: 8 months ago - 1 dependent repositories - 94 downloads last month - 17 stars on GitHub - 1 maintainer
bapy 2.0.5
A tool for managing python packages
1,489 versions - Latest release: 8 months ago - 1 dependent repositories - 8.48 thousand downloads last month - 1 maintainer
basenji 0.1 removed
Sequential regulatory activity machine learning
1 version - Latest release: 8 months ago - 325 stars on GitHub - 1 maintainer
dover-lap 1.3.1
Combine overlap-aware diarization output RTTMs
10 versions - Latest release: 8 months ago - 1 dependent repositories - 95 downloads last month - 73 stars on GitHub - 1 maintainer
pwntools-elf-only 4.12.3.dev0 💰
Pwntools CTF framework and exploit development library.
4 versions - Latest release: 9 months ago - 1 dependent package - 1 dependent repositories - 582 downloads last month - 0 stars on GitHub - 1 maintainer
pybedlite 0.0.4 💰
Python classes for interfacing with bed intervals
3 versions - Latest release: 9 months ago - 1 dependent repositories - 536 downloads last month - 12 stars on GitHub - 2 maintainers
modbam-to-bedmethyl 0.2.0
Oxford Nanopore Technologies - ModBAM to bedMethyl
2 versions - Latest release: 10 months ago - 1 dependent repositories - 3 downloads last month - 1 maintainer
cdot 0.2.21
Transcripts for HGVS libraries
22 versions - Latest release: 10 months ago - 1 dependent package - 1 dependent repositories - 656 downloads last month - 19 stars on GitHub - 1 maintainer
omacase 1.0
a tool to analyze optical mapping data, with _de novo_ repeat motif detection and analysis capabi...
1 version - Latest release: 10 months ago - 10 downloads last month - 1 stars on GitHub - 1 maintainer
exclusionms 0.3.0
Python package for working with exclusionms-api and exclusionms-streamlit
17 versions - Latest release: 10 months ago - 1 dependent repositories - 99 downloads last month - 1 stars on GitHub - 1 maintainer
tb-variant-filter 0.4.0
This tool offers multiple options for filtering variants (in VCF files, relative to M. tuberculos...
7 versions - Latest release: 10 months ago - 1 dependent repositories - 67 downloads last month - 6 stars on GitHub - 1 maintainer
pybppibridge 0.5.1 removed
This solution builds a bridge between Blue Prism Process Intelligence (alias BPPI) and some exter...
7 versions - Latest release: 10 months ago - 436 downloads last month - 2 stars on GitHub - 1 maintainer
Top 6.5% on pypi.org
zipline-reloaded 3.0.3
A Pythonic backtester for trading algorithms
22 versions - Latest release: 10 months ago - 1 dependent package - 2 dependent repositories - 2.04 thousand downloads last month - 906 stars on GitHub - 1 maintainer
Top 2.4% on pypi.org
natasha 1.6.0
Named-entity recognition for russian language
13 versions - Latest release: 10 months ago - 6 dependent packages - 73 dependent repositories - 9.39 thousand downloads last month - 1,149 stars on GitHub - 2 maintainers
Top 3.5% on pypi.org
yargy 0.16.0
Rule-based facts extraction for Russian language
15 versions - Latest release: 10 months ago - 2 dependent packages - 56 dependent repositories - 10 thousand downloads last month - 307 stars on GitHub - 2 maintainers
make-prg 0.5.0
Code to create a PRG from a Multiple Sequence Alignment file
3 versions - Latest release: 11 months ago - 1 dependent repositories - 25 downloads last month - 21 stars on GitHub - 2 maintainers
chess-hic 0.3.8
Quantitative comparison and automatic feature extraction for chromatin contact data.
10 versions - Latest release: 11 months ago - 3 dependent repositories - 74 downloads last month - 26 stars on GitHub - 1 maintainer
petl-retouched-version 0.1.2
A Python package for extracting, transforming and loading tables of data. Modified from Original ...
3 versions - Latest release: 11 months ago - 16 downloads last month - 1,205 stars on GitHub - 1 maintainer
isotools 0.3.4
Framework for the analysis of long read transcriptome sequencing data
24 versions - Latest release: 11 months ago - 2 dependent repositories - 170 downloads last month - 19 stars on GitHub - 1 maintainer
omniplot 0.4.9
To draw scientific plots easily
11 versions - Latest release: 12 months ago - 115 downloads last month - 16 stars on GitHub - 1 maintainer
boxjelly 0.3.3
BoxJelly is a tool for viewing and editing object tracks in video.
11 versions - Latest release: 12 months ago - 40 downloads last month - 1 maintainer