Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

Top 2.7% on pypi.org
Top 3.3% downloads on pypi.org
Top 0.3% dependent packages on pypi.org
Top 2.0% dependent repos on pypi.org
Top 6.3% forks on pypi.org
Top 1.2% docker downloads on pypi.org

pypi.org : pyranges

GenomicRanges for Python.

Registry - Source - Homepage - Documentation - JSON
purl: pkg:pypi/pyranges
Keywords: bioinformatics, genomicranges, genomics, data-structures, pandas, python
License: MIT
Latest release: 23 days ago
First release: about 6 years ago
Dependent packages: 56
Dependent repositories: 56
Downloads: 15,518 last month
Stars: 389 on GitHub
Forks: 42 on GitHub
Docker dependents: 9
Docker downloads: 3,881
Total Commits: 522
Committers: 26
Average commits per author: 20.077
Development Distribution Score (DDS): 0.239
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: 9 days ago

bolero 0.0.29
sequence
32 versions - Latest release: 17 days ago - 526 downloads last month - 1 maintainer
pyranges-plot 0.0.20
'Gene visualization package for dataframe objects generated with PyRanges.'
20 versions - Latest release: 20 days ago - 103 downloads last month - 2 stars on GitHub - 1 maintainer
metagene 0.0.0.dev50
Metagene Profiling Analysis and Visualization
42 versions - Latest release: 21 days ago - 252 downloads last month - 1 maintainer
singlem 0.17.0
Novelty-inclusive microbial community profiling of shotgun metagenomes
17 versions - Latest release: 22 days ago - 1 dependent repositories - 134 downloads last month - 103 stars on GitHub - 2 maintainers
dismal 0.1.18b0
Demographic inference from the distribution of pairwise segregating sites
2 versions - Latest release: 24 days ago - 150 downloads last month - 2 stars on GitHub - 1 maintainer
bam-filter 1.5.0
A simple tool to filter references from a BAM file using different filter types
91 versions - Latest release: 26 days ago - 1 dependent repositories - 901 downloads last month - 9 stars on GitHub - 1 maintainer
Top 7.9% on pypi.org
pyrle 0.0.40
Numeric run length encoding for Python.
40 versions - Latest release: about 1 month ago - 5 dependent packages - 13 dependent repositories - 1.8 thousand downloads last month - 16 stars on GitHub - 1 maintainer
gaiaassociation 1.2.4
Compare ATAC-seq data to loci.
13 versions - Latest release: about 1 month ago - 164 downloads last month - 1 maintainer
dnbc4tools 2.1.2
DNBelab Series Single-Cell analysis workflow
18 versions - Latest release: about 1 month ago - 1 dependent repositories - 207 downloads last month - 49 stars on GitHub - 1 maintainer
leafcutteriti 0.2.0
LeafcutterITI implementation
2 versions - Latest release: about 1 month ago - 121 downloads last month - 0 stars on GitHub - 1 maintainer
dnbc4dev 2.3.7
DNBelab Series Single-Cell analysis workflow
35 versions - Latest release: about 1 month ago - 1 dependent repositories - 242 downloads last month - 50 stars on GitHub - 1 maintainer
seqnado 0.5.1
Pipelines for genomics analysis
21 versions - Latest release: about 1 month ago - 78 downloads last month - 5 stars on GitHub - 2 maintainers
scmallet 0.1.2
Python wrapper of MALLET for LDA analysis on single-cell data
6 versions - Latest release: about 1 month ago - 62 downloads last month - 1 stars on GitHub - 1 maintainer
amgsim 1.0.9
aMGSIM: simulate ancient metagenomes for multiple synthetic communities
26 versions - Latest release: about 1 month ago - 1 dependent repositories - 139 downloads last month - 3 stars on GitHub - 1 maintainer
bolero-process 0.0.20
Data preprocessing for bolero package
18 versions - Latest release: about 1 month ago - 1 dependent package - 272 downloads last month - 1 maintainer
epipackpy 0.1.0.dev10
EpiPack: scATAC-seq integration, reference mapping and cell type annotation
10 versions - Latest release: about 2 months ago - 79 downloads last month - 1 stars on GitHub - 1 maintainer
gsmap 1.62
Genetics-informed pathogenic spatial mapping
3 versions - Latest release: 2 months ago - 27 downloads last month - 1 stars on GitHub - 1 maintainer
callingcardstools 1.5.2
A collection of objects and functions to work with calling cards sequencing tools
23 versions - Latest release: 2 months ago - 118 downloads last month - 0 stars on GitHub - 1 maintainer
aacrgenie 16.3.0
AACR Project GENIE ETL
36 versions - Latest release: 2 months ago - 1 dependent repositories - 182 downloads last month - 12 stars on GitHub - 2 maintainers
leafletsc 0.2.16
Alternative splicing quantification in single cells with Leaflet
9 versions - Latest release: 3 months ago - 87 downloads last month - 5 stars on GitHub - 1 maintainer
scgenome 0.0.19
Code for analyzing single cell whole genomes
16 versions - Latest release: 3 months ago - 3 dependent repositories - 114 downloads last month - 3 stars on GitHub - 3 maintainers
rnalib 0.0.3
A python-based transcriptomics library
3 versions - Latest release: 3 months ago - 36 downloads last month - 1 stars on GitHub - 1 maintainer
celescope 2.0.8
Single Cell Analysis Pipelines
61 versions - Latest release: 3 months ago - 1 dependent repositories - 330 downloads last month - 80 stars on GitHub - 1 maintainer
cptac 1.5.13
Python packaging for CPTAC data
59 versions - Latest release: 3 months ago - 1 dependent repositories - 673 downloads last month - 79 stars on GitHub - 2 maintainers
mates 0.1.4
4 versions - Latest release: 4 months ago - 13 downloads last month - 1 maintainer
capcruncher 0.3.12
An end-to-end solution for processing Capture-C, Tri-C and Tiled-C data
19 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 167 downloads last month - 6 stars on GitHub - 1 maintainer
capcruncher-tools 0.2.1
Extra utilities to enhance CapCruncher
15 versions - Latest release: 4 months ago - 1 dependent package - 284 downloads last month - 1 stars on GitHub - 1 maintainer
gps-mapping 1.0.2
Genetics-informed pathogenic spatial mapping
7 versions - Latest release: 5 months ago - 33 downloads last month - 1 stars on GitHub - 1 maintainer
seqdata 0.1.3
Annotated sequence data
5 versions - Latest release: 5 months ago - 49 downloads last month - 2 maintainers
scdna-replication-tools 0.0.1
Code for analyzing single-cell replication dynamics
1 version - Latest release: 6 months ago - 15 downloads last month - 1 stars on GitHub - 1 maintainer
gollumpy 1.0.5
detection of rings on acrocentric chromosomes using short reads sequencing
6 versions - Latest release: 6 months ago - 24 downloads last month - 1 maintainer
glue-genes 1.2.2
Multidimensional data visualization for genomics
7 versions - Latest release: 6 months ago - 46 downloads last month - 7 stars on GitHub - 1 maintainer
guido 0.1.5
5 versions - Latest release: 7 months ago - 39 downloads last month - 1 maintainer
x-filter 1.0.8
A simple tool to filter BLASTx m8 files using the FAMLI algorithm
23 versions - Latest release: 8 months ago - 1 dependent repositories - 195 downloads last month - 3 stars on GitHub - 1 maintainer
handygenome 0.4.6
An integrated platform for genome sequencing analysis
7 versions - Latest release: 8 months ago - 42 downloads last month - 1 stars on GitHub - 1 maintainer
fuc 0.37.0 💰
Frequently used commands in bioinformatics
38 versions - Latest release: 9 months ago - 1 dependent package - 2 dependent repositories - 400 downloads last month - 44 stars on GitHub - 1 maintainer
epiout 0.0.1
EpiOut: outlier detection for DNA accesibility data.
1 version - Latest release: 9 months ago - 17 downloads last month - 1 maintainer
isocomp 0.3.0
4 versions - Latest release: 9 months ago - 32 downloads last month - 1 maintainer
dnbc4-test 2.2.1
DNBelab Series Single-Cell analysis workflow
9 versions - Latest release: 9 months ago - 1 dependent repositories - 67 downloads last month - 3 stars on GitHub - 1 maintainer
easybioinfo 0.3.1
Convenient python functions for bioinformatics
12 versions - Latest release: 10 months ago - 1 dependent repositories - 76 downloads last month - 0 stars on GitHub - 1 maintainer
eugene-tools 0.1.2
Elucidating the Utility of Genomic Elements with Neural Nets
9 versions - Latest release: 11 months ago - 103 downloads last month - 1 maintainer
motifdata 0.1.2
Motif representation and analysis toolkit
4 versions - Latest release: 11 months ago - 1 dependent package - 39 downloads last month - 0 stars on GitHub - 1 maintainer
enformer-dna-diff 1.4
This is a package for that combines DeepMind Enformer model with DNA Diffusion project
5 versions - Latest release: 11 months ago - 44 downloads last month - 5 stars on GitHub - 1 maintainer
epilogos 0.1.2
Information-theoretic navigation of multi-tissue functional genomic annotations
5 versions - Latest release: 11 months ago - 1 dependent repositories - 68 downloads last month - 38 stars on GitHub - 2 maintainers
pyroe 0.9.3
utilities of alevin-fry
19 versions - Latest release: 11 months ago - 2 dependent packages - 1 dependent repositories - 251 downloads last month - 15 stars on GitHub - 1 maintainer
omniplot 0.4.9
To draw scientific plots easily
11 versions - Latest release: 12 months ago - 115 downloads last month - 16 stars on GitHub - 1 maintainer
mmsplice 2.4.0
Predict splicing variant effect from VCF
17 versions - Latest release: about 1 year ago - 1 dependent repositories - 378 downloads last month - 38 stars on GitHub - 2 maintainers
bwread 0.0.5
Read bigwig files into Python data science formats.
5 versions - Latest release: about 1 year ago - 2 dependent packages - 1 dependent repositories - 459 downloads last month - 5 stars on GitHub - 1 maintainer
fibertools 0.3.0
A project for handling fiber-seq data.
19 versions - Latest release: about 1 year ago - 1 dependent repositories - 112 downloads last month - 7 stars on GitHub - 1 maintainer
py3dpolys-le 2023.3b0
3D Polymer Simulations - Loop Extrusion model
2 versions - Latest release: about 1 year ago - 10 downloads last month - 0 stars on GitLab.com - 1 maintainer
hl7v2genomicsextractor 0.0.4
Convert vcf/xml files to HL7V2 message
4 versions - Latest release: over 1 year ago - 36 downloads last month - 1 stars on GitHub - 1 maintainer
seacells 0.3.3
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-ce...
7 versions - Latest release: over 1 year ago - 1 dependent repositories - 190 downloads last month - 134 stars on GitHub - 1 maintainer
lapa 0.0.5
Tools for alternative polyadenylation detection and analysis from diverse data sources (3'seq and...
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 44 downloads last month - 22 stars on GitHub - 2 maintainers
extend-orfs 0.0.1111111
MModule description
21 versions - Latest release: over 1 year ago - 115 downloads last month - 2 stars on GitHub - 1 maintainer
alethiomics 0.2.6 removed
Alethiomics data analysis utils
33 versions - Latest release: over 1 year ago - 112 downloads last month - 1 maintainer
vcf2fhir 0.1.1
Convert .vcf files to HL7 FHIR standard
9 versions - Latest release: about 2 years ago - 1 dependent repositories - 91 downloads last month - 36 stars on GitHub - 4 maintainers